Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104114334 . T A CCDS782.1:NM_020978.4:c.110gTt>gAt_NP_066188.1:p.37V>D Homo sapiens amylase, alpha 2B (pancreatic) (AMY2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3old 1 P04746 98.99 0.0 X-RAY
2011-04-13 VAL A:22 A:22 39.0 0.252 H -62.8 -33.5 39.0 0.252 0.0 HOH
3.136
N
O
3ole 1 P04746 98.99 0.0 X-RAY
2011-04-13 VAL A:22 A:22 41.0 0.265 H -62.0 -34.7 41.0 0.265 0.0 HOH
2.861
O
O
3olg 1 P04746 98.99 0.0 X-RAY
2011-04-13 VAL A:22 A:22 42.0 0.271 H -63.5 -37.3 42.0 0.271 0.0 HOH
2.859
N
O
3oli 1 P04746 98.99 0.0 X-RAY
2011-04-13 VAL A:22 A:22 37.0 0.239 H -62.8 -35.4 37.0 0.239 0.0 HOH
2.603
CG1
O
6z8l 1 P04746 98.79 0.0 X-RAY
2020-12-02 VAL A:22 A:22 40.0 0.258 H -65.5 -31.5 40.0 0.258 0.0 HOH
2.168
H
O
1b2y 1 P04746 98.79 0.0 X-RAY
2000-02-16 VAL A:22 A:22 44.0 0.284 H -61.2 -32.7 44.0 0.284 0.0 HOH
3.222
N
O
1bsi 1 P04746 98.59 0.0 X-RAY
1999-05-18 VAL A:22 A:22 54.0 0.348 H -61.8 -33.0 54.0 0.348 0.0 HOH
2.870
CG2
O
1cpu 1 P04746 98.59 0.0 X-RAY
1999-06-14 VAL A:22 A:22 46.0 0.297 H -62.4 -36.1 46.0 0.297 0.0 HOH
2.907
O
O
1hny 1 P04746 98.59 0.0 X-RAY
1996-03-08 VAL A:22 A:22 48.0 0.31 H -60.3 -38.1 48.0 0.31 0.0 HOH
3.088
N
O
1u2y 1 P04746 98.59 0.0 X-RAY
2004-09-07 VAL A:22 A:22 49.0 0.316 H -60.7 -37.2 49.0 0.316 0.0 HOH
2.924
CG2
O
1u30 1 P04746 98.59 0.0 X-RAY
2004-09-07 VAL A:22 A:22 47.0 0.303 H -67.1 -28.1 47.0 0.303 0.0 HOH
3.051
N
O
1u33 1 P04746 98.59 0.0 X-RAY
2004-09-07 VAL A:22 A:22 53.0 0.342 H -58.4 -36.1 53.0 0.342 0.0 HOH
2.941
N
O
1xcw 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:22 A:22 48.0 0.31 H -65.2 -31.5 48.0 0.31 0.0 HOH
2.854
N
O
1xcx 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:22 A:22 49.0 0.316 H -61.7 -37.6 49.0 0.316 0.0 HOH
3.159
N
O
1xd0 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:22 A:22 48.0 0.31 H -63.3 -32.8 48.0 0.31 0.0 HOH
3.000
N
O
1xd1 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:22 A:22 45.0 0.29 H -60.3 -30.2 45.0 0.29 0.0 HOH
3.583
CA
O
2qmk 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:22 A:22 44.0 0.284 H -63.4 -39.1 44.0 0.284 0.0 HOH
3.059
N
O
2qv4 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:22 A:22 40.0 0.258 H -63.7 -33.9 40.0 0.258 0.0 HOH
3.039
CG1
O
3bai 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:22 A:22 48.0 0.31 H -60.2 -37.8 48.0 0.31 0.0 HOH
3.034
N
O
3baj 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:22 A:22 54.0 0.348 H -62.0 -35.0 54.0 0.348 0.0 HOH
3.061
N
O
3baw 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:22 A:22 37.0 0.239 H -60.3 -38.8 37.0 0.239 0.0 HOH
2.949
CG1
O
3ij7 1 P04746 98.59 0.0 X-RAY
2009-10-27 VAL A:22 A:22 43.0 0.277 H -61.6 -34.6 43.0 0.277 0.0 HOH
2.994
N
O
3ij8 1 P04746 98.59 0.0 X-RAY
2009-10-27 VAL A:22 A:22 44.0 0.284 H -61.9 -33.4 44.0 0.284 0.0 HOH
2.551
O
O
3ij9 1 P04746 98.59 0.0 X-RAY
2009-10-27 VAL A:22 A:22 48.0 0.31 H -60.6 -37.6 48.0 0.31 0.0 HOH
3.068
N
O
4gqq 1 P04746 98.59 0.0 X-RAY
2012-10-24 VAL A:22 A:22 38.0 0.245 H -64.9 -38.9 38.0 0.245 0.0 0XR
0XR
HOH
4.056
3.526
2.956
CG1
CG1
N
O4
O1'
O
4gqr 1 P04746 98.59 0.0 X-RAY
2012-10-24 VAL A:22 A:22 37.0 0.239 H -63.4 -35.1 37.0 0.239 0.0 HOH
2.998
N
O
4w93 1 P04746 98.59 0.0 X-RAY
2015-07-15 VAL A:22 A:22 35.0 0.226 H -66.4 -29.8 35.0 0.226 0.0 HOH
2.861
O
O
4x9y 1 P04746 98.59 0.0 X-RAY
2014-12-31 VAL A:22 A:22 39.0 0.252 H -63.3 -34.7 39.0 0.252 0.0 HOH
2.156
H
O
5e0f 1 P04746 98.59 0.0 X-RAY
2016-09-07 VAL A:22 A:22 38.0 0.245 H -63.8 -33.7 38.0 0.245 0.0 HOH
2.116
H
O
5emy 1 P04746 98.59 0.0 X-RAY
2016-07-06 VAL A:22 A:22 42.0 0.271 H -62.5 -37.6 42.0 0.271 0.0 HOH
2.154
H
O
5kez 1 P04746 98.59 0.0 X-RAY
2017-03-29 VAL A:22 A:22 38.0 0.245 H -67.5 -31.1 38.0 0.245 0.0 HOH
3.011
N
O
5u3a 1 P04746 98.59 0.0 X-RAY
2017-12-06 VAL A:22 A:22 39.0 0.252 H -63.9 -34.8 39.0 0.252 0.0 HOH
5.519
O
O
5va9 1 P04746 98.59 0.0 X-RAY
2018-03-28 VAL A:22 A:22 41.0 0.265 H -68.2 -36.5 41.0 0.265 0.0 HOH
7.869
CG1
O
VAL B:22 B:22 43.0 0.277 H -68.4 -38.8 NA NA NA
6obx 1 P04746 98.59 0.0 X-RAY
2020-02-12 VAL A:22 A:22 42.0 0.271 H -63.8 -35.6 42.0 0.271 0.0 HOH
2.159
H
O
6ocn 1 P04746 98.59 0.0 X-RAY
2020-02-12 VAL A:22 A:22 43.0 0.277 H -61.8 -36.4 43.0 0.277 0.0 HOH
2.142
H
O
1xgz 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:22 A:22 52.0 0.335 H -59.7 -35.5 52.0 0.335 0.0 HOH
3.077
N
O
1xh0 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:22 A:22 50.0 0.323 H -59.8 -37.2 50.0 0.323 0.0 HOH
2.988
N
O
1xh1 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:22 A:22 50.0 0.323 H -60.6 -36.4 50.0 0.323 0.0 HOH
3.017
N
O
1xh2 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:22 A:22 52.0 0.335 H -60.5 -35.2 52.0 0.335 0.0 HOH
3.185
N
O
3bak 1 P04746 98.39 0.0 X-RAY
2008-03-25 VAL A:22 A:22 49.0 0.316 H -59.0 -40.2 49.0 0.316 0.0 HOH
2.979
N
O
3bax 1 P04746 98.39 0.0 X-RAY
2008-03-25 VAL A:22 A:22 47.0 0.303 H -64.8 -31.9 47.0 0.303 0.0 HOH
3.097
N
O
3bay 1 P04746 98.39 0.0 X-RAY
2008-03-25 VAL A:22 A:22 48.0 0.31 H -58.0 -38.9 48.0 0.31 0.0 HOH
3.169
N
O
1kgw 1 P04746 98.39 0.0 X-RAY
2002-01-16 VAL A:22 A:22 44.0 0.284 H -67.2 -32.3 44.0 0.284 0.0 HOH
3.077
N
O
2cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 VAL A:22 A:22 49.0 0.316 H -63.8 -32.8 49.0 0.316 0.0 HOH
3.688
CA
O
3cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 VAL A:22 A:22 47.0 0.303 H -64.5 -32.0 47.0 0.303 0.0 HOH
3.517
CA
O
5td4 1 P04746 98.39 0.0 X-RAY
2016-11-02 VAL A:22 A:22 44.0 0.284 H -64.2 -36.6 44.0 0.284 0.0 GLC
GLC
GLC
HOH
7.115
7.883
9.756
3.011
CG2
CG2
CG1
N
O2
O6
O6
O
1kgx 1 P04746 98.39 0.0 X-RAY
2002-01-16 VAL A:22 A:22 49.0 0.316 H -62.6 -36.2 49.0 0.316 0.0 HOH
2.807
CG2
O
1kbb 1 P04746 98.39 0.0 X-RAY
2002-04-10 VAL A:22 A:22 42.0 0.271 H -64.1 -34.2 42.0 0.271 0.0 HOH
3.008
N
O
1kgu 1 P04746 98.39 0.0 X-RAY
2002-01-16 VAL A:22 A:22 41.0 0.265 H -67.0 -32.6 41.0 0.265 0.0 HOH
2.962
CG1
O
1kb3 1 P04746 98.39 0.0 X-RAY
2002-05-01 VAL A:22 A:22 50.0 0.323 H -59.7 -35.3 50.0 0.323 0.0 HOH
2.741
CG2
O
1kbk 1 P04746 98.39 0.0 X-RAY
2002-04-10 VAL A:22 A:22 54.0 0.348 H -62.3 -37.5 54.0 0.348 0.0 HOH
2.989
CG2
O
1c8q 1 P04745 97.58 0.0 X-RAY
2001-06-13 VAL A:22 A:22 42.0 0.271 H -63.5 -35.0 42.0 0.271 0.0 HOH
3.148
N
O
1mfv 1 P04745 97.58 0.0 X-RAY
2002-11-20 VAL A:22 A:22 41.0 0.265 H -65.0 -33.0 41.0 0.265 0.0 HOH
2.847
O
O
1smd 1 P04745 97.58 0.0 X-RAY
1996-07-11 VAL A:22 A:22 46.0 0.297 H -62.1 -34.7 46.0 0.297 0.0 HOH
2.934
N
O
1xv8 1 P04745 97.58 0.0 X-RAY
2005-10-11 VAL A:22 A:22 49.0 0.316 H -50.1 -35.2 49.0 0.316 0.0 HOH
3.390
CA
O
VAL B:22 B:22 51.0 0.329 H -50.1 -35.3 51.0 0.329 0.0 HOH
3.390
CA
O
1q4n 1 P04745 97.38 0.0 X-RAY
2004-03-16 VAL A:22 X:22 41.0 0.265 H -65.0 -33.9 41.0 0.265 0.0 HOH
2.898
O
O
1z32 1 P04745 97.38 0.0 X-RAY
2005-05-31 VAL A:22 X:22 41.0 0.265 H -63.6 -33.9 41.0 0.265 0.0 HOH
2.897
O
O
1jxj 1 P04745 97.38 0.0 X-RAY
2001-09-14 VAL A:22 A:22 44.0 0.284 H -65.5 -33.2 44.0 0.284 0.0 HOH
2.983
N
O
1nm9 1 P04745 97.38 0.0 X-RAY
2004-01-20 VAL A:22 A:22 40.0 0.258 H -63.3 -33.9 40.0 0.258 0.0 HOH
2.811
O
O
3blk 1 P04745 97.38 0.0 X-RAY
2008-11-25 VAL A:22 A:22 38.0 0.245 H -65.8 -34.4 38.0 0.245 0.0 HOH
2.806
O
O
3blp 1 P04745 97.38 0.0 X-RAY
2008-11-18 VAL A:22 X:22 44.0 0.284 H -62.3 -34.7 44.0 0.284 0.0 HOH
2.755
CG2
O
1jxk 1 P04745 96.57 0.0 X-RAY
2001-09-14 VAL A:22 A:22 42.0 0.271 H -65.8 -36.2 42.0 0.271 0.0 HOH
2.970
N
O
1mfu 1 P04745 96.57 0.0 X-RAY
2002-11-20 VAL A:22 A:22 48.0 0.31 H -64.7 -37.8 48.0 0.31 0.0 HOH
2.426
CB
O
3dhp 1 P04745 96.37 0.0 X-RAY
2008-07-01 VAL A:22 A:22 43.0 0.277 H -63.7 -33.5 43.0 0.277 0.0 HOH
2.944
N
O
1kxq 1 P00690 87.1 0.0 X-RAY
2002-06-19 VAL A:22 A:22 42.0 0.271 H -66.8 -31.6 42.0 0.271 0.0 HOH
2.793
O
O
VAL B:22 B:22 33.0 0.213 H -64.4 -34.2 NA NA NA
VAL C:22 C:22 44.0 0.284 H -61.6 -37.7 NA NA NA
VAL D:22 D:22 42.0 0.271 H -64.7 -34.6 NA NA NA
1kxt 1 P00690 87.1 0.0 X-RAY
2002-06-19 VAL A:22 A:22 48.0 0.31 H -68.3 -31.5 48.0 0.31 0.0 HOH
2.654
N
O
VAL C:22 C:22 43.0 0.277 H -57.3 -44.3 NA NA NA
VAL E:22 E:22 43.0 0.277 H -63.8 -41.0 NA NA NA
1kxv 1 P00690 87.1 0.0 X-RAY
2002-06-19 VAL A:22 A:22 36.0 0.232 H -65.4 -35.9 36.0 0.232 0.0 HOH
2.928
CG1
O
VAL B:22 B:22 37.0 0.239 H -63.6 -33.1 NA NA NA
1dhk 1 P00690 87.1 0.0 X-RAY
1997-12-24 VAL A:22 A:22 52.0 0.335 H -64.1 -36.8 52.0 0.335 0.0 HOH
1.709
H
H2
1ppi 1 P00690 87.1 0.0 X-RAY
1995-05-24 VAL A:22 A:22 41.0 0.265 H -68.6 -31.4 41.0 0.265 0.0 HOH
2.910
O
O
3l2l 1 P00690 86.9 0.0 X-RAY
2010-04-14 VAL A:22 A:22 44.0 0.284 H -60.4 -40.9 44.0 0.284 0.0 HOH
2.188
H
O
3l2m 1 P00690 86.9 0.0 X-RAY
2010-04-14 VAL A:22 A:22 45.0 0.29 H -63.0 -35.9 45.0 0.29 0.0 HOH
2.162
H
O
1ua3 1 P00690 86.9 0.0 X-RAY
2003-10-14 VAL A:22 A:22 43.0 0.277 H -69.1 -31.7 43.0 0.277 0.0 HOH
2.906
N
O
1vah 1 P00690 86.9 0.0 X-RAY
2005-04-26 VAL A:22 A:22 42.0 0.271 H -59.6 -33.6 42.0 0.271 0.0 HOH
3.260
N
O
1jfh 1 P00690 86.9 0.0 X-RAY
1998-12-02 VAL A:22 A:22 39.0 0.252 H -63.8 -35.8 39.0 0.252 0.0 HOH
2.723
O
O
1ose 1 P00690 86.69 0.0 X-RAY
1997-04-01 VAL A:22 A:22 39.0 0.252 H -59.7 -43.5 39.0 0.252 0.0 HOH
3.087
N
O
1hx0 1 P00690 86.69 0.0 X-RAY
2001-08-08 VAL A:22 A:22 46.0 0.297 H -64.5 -31.8 46.0 0.297 0.0 EDO
HOH
5.180
2.967
CG1
N
O2
O
1wo2 1 P00690 86.69 0.0 X-RAY
2005-03-15 VAL A:22 A:22 41.0 0.265 H -64.5 -35.9 41.0 0.265 0.0 HOH
2.996
N
O
1bvn 1 P00690 86.69 0.0 X-RAY
1998-09-23 VAL A:22 P:22 39.0 0.252 H -66.4 -27.7 39.0 0.252 0.0 HOH
3.479
CG1
O
1pif 1 P00690 86.49 0.0 X-RAY
1996-12-07 VAL A:22 A:22 46.0 0.297 H -58.1 -39.4 46.0 0.297 0.0 HOH
3.086
N
O
1pig 1 P00690 86.49 0.0 X-RAY
1996-12-07 VAL A:22 A:22 50.0 0.323 H -60.8 -39.4 50.0 0.323 0.0 HOH
3.024
N
O
4x0n 1 P00690 86.49 0.0 X-RAY
2015-11-25 VAL A:22 A:22 39.0 0.252 H -64.8 -33.0 39.0 0.252 0.0 HOH
3.053
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19961-f1 1 P19961 100.0 0.0 VAL A:37 A:37 38.0 0.245 H -63.5 -36.8
af-p04746-f1 1 P04746 98.83 0.0 VAL A:37 A:37 54.0 0.348 H -61.4 -39.2
af-p0dte7-f1 1 P0DTE7 97.46 0.0 VAL A:37 A:37 37.0 0.239 H -63.8 -37.3
af-p0dte8-f1 1 P0DTE8 97.46 0.0 VAL A:37 A:37 37.0 0.239 H -62.8 -38.2
af-p0dub6-f1 1 P0DUB6 97.46 0.0 VAL A:37 A:37 45.0 0.29 H -62.9 -36.8