Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104114762 . C A CCDS782.1:NM_020978.4:c.199Cac>Aac_NP_066188.1:p.67H>N Homo sapiens amylase, alpha 2B (pancreatic) (AMY2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3old 1 P04746 98.99 0.0 X-RAY
2011-04-13 TYR A:52 A:52 135.0 0.587 T -101.7 -16.1 135.0 0.587 0.0 HOH
2.672
CD2
O
3ole 1 P04746 98.99 0.0 X-RAY
2011-04-13 TYR A:52 A:52 138.0 0.6 T -101.8 -14.1 138.0 0.6 0.0 HOH
2.848
CD1
O
3olg 1 P04746 98.99 0.0 X-RAY
2011-04-13 TYR A:52 A:52 129.0 0.561 T -102.2 -8.0 129.0 0.561 0.0 HOH
2.319
O
O
3oli 1 P04746 98.99 0.0 X-RAY
2011-04-13 TYR A:52 A:52 132.0 0.574 T -101.2 -13.3 132.0 0.574 0.0 HOH
2.766
CD2
O
6z8l 1 P04746 98.79 0.0 X-RAY
2020-12-02 TYR A:52 A:52 126.0 0.548 T -104.9 -9.7 126.0 0.548 0.0 GLC
GLC
GLC
HOH
9.524
7.553
5.446
2.149
H
C
O
HD1
HO6
HO3
HO2
O
1b2y 1 P04746 98.79 0.0 X-RAY
2000-02-16 TYR A:52 A:52 132.0 0.574 T -99.7 -6.7 132.0 0.574 0.0 HOH
4.991
OH
O
1bsi 1 P04746 98.59 0.0 X-RAY
1999-05-18 TYR A:52 A:52 137.0 0.596 T -100.4 -8.0 137.0 0.596 0.0 HOH
2.718
O
O
1cpu 1 P04746 98.59 0.0 X-RAY
1999-06-14 TYR A:52 A:52 139.0 0.604 T -104.6 -4.4 139.0 0.604 0.0 HOH
3.114
CE1
O
1hny 1 P04746 98.59 0.0 X-RAY
1996-03-08 TYR A:52 A:52 135.0 0.587 T -103.3 -7.6 135.0 0.587 0.0 HOH
3.127
CG
O
1u2y 1 P04746 98.59 0.0 X-RAY
2004-09-07 TYR A:52 A:52 139.0 0.604 T -105.1 -6.6 139.0 0.604 0.0 HOH
3.209
N
O
1u30 1 P04746 98.59 0.0 X-RAY
2004-09-07 TYR A:52 A:52 141.0 0.613 T -101.7 -8.7 141.0 0.613 0.0 HOH
5.255
OH
O
1u33 1 P04746 98.59 0.0 X-RAY
2004-09-07 TYR A:52 A:52 138.0 0.6 T -102.2 -6.0 138.0 0.6 0.0 HOH
3.548
CE1
O
1xcw 1 P04746 98.59 0.0 X-RAY
2004-12-07 TYR A:52 A:52 143.0 0.622 B -107.1 1.5 143.0 0.622 0.0 HOH
4.841
O
O
1xcx 1 P04746 98.59 0.0 X-RAY
2004-12-07 TYR A:52 A:52 137.0 0.596 T -105.0 -9.4 137.0 0.596 0.0 HOH
4.703
O
O
1xd0 1 P04746 98.59 0.0 X-RAY
2004-12-07 TYR A:52 A:52 139.0 0.604 T -108.4 -4.1 139.0 0.604 0.0 HOH
5.143
OH
O
1xd1 1 P04746 98.59 0.0 X-RAY
2004-12-07 TYR A:52 A:52 133.0 0.578 T -104.9 -8.0 133.0 0.578 0.0 HOH
4.597
O
O
2qmk 1 P04746 98.59 0.0 X-RAY
2008-03-25 TYR A:52 A:52 127.0 0.552 B -114.1 7.2 127.0 0.552 0.0 HOH
3.062
CE1
O
2qv4 1 P04746 98.59 0.0 X-RAY
2008-03-25 TYR A:52 A:52 134.0 0.583 T -109.2 -6.5 134.0 0.583 0.0 QV4
HOH
8.387
2.969
N
O
O6Q
O
3bai 1 P04746 98.59 0.0 X-RAY
2008-03-25 TYR A:52 A:52 138.0 0.6 T -102.6 -11.1 138.0 0.6 0.0 HOH
3.240
OH
O
3baj 1 P04746 98.59 0.0 X-RAY
2008-03-25 TYR A:52 A:52 138.0 0.6 T -102.1 -4.7 138.0 0.6 0.0 HOH
2.752
O
O
3baw 1 P04746 98.59 0.0 X-RAY
2008-03-25 TYR A:52 A:52 136.0 0.591 T -105.2 -4.4 136.0 0.591 0.0 HOH
3.100
N
O
3ij7 1 P04746 98.59 0.0 X-RAY
2009-10-27 TYR A:52 A:52 139.0 0.604 T -104.9 -5.1 139.0 0.604 0.0 HOH
3.028
N
O
3ij8 1 P04746 98.59 0.0 X-RAY
2009-10-27 TYR A:52 A:52 139.0 0.604 T -104.9 -6.3 139.0 0.604 0.0 HOH
2.734
O
O
3ij9 1 P04746 98.59 0.0 X-RAY
2009-10-27 TYR A:52 A:52 138.0 0.6 T -105.5 -9.3 138.0 0.6 0.0 HOH
3.209
N
O
4gqq 1 P04746 98.59 0.0 X-RAY
2012-10-24 TYR A:52 A:52 197.0 0.857 S -83.9 88.5 197.0 0.857 0.0 HOH
3.759
CA
O
4gqr 1 P04746 98.59 0.0 X-RAY
2012-10-24 TYR A:52 A:52 130.0 0.565 T -109.5 -22.5 130.0 0.565 0.0 HOH
3.176
N
O
4w93 1 P04746 98.59 0.0 X-RAY
2015-07-15 TYR A:52 A:52 131.0 0.57 T -98.5 -13.6 131.0 0.57 0.0 HOH
2.468
O
O
4x9y 1 P04746 98.59 0.0 X-RAY
2014-12-31 TYR A:52 A:52 135.0 0.587 T -105.8 -15.6 135.0 0.587 0.0 HOH
2.051
H
O
5e0f 1 P04746 98.59 0.0 X-RAY
2016-09-07 TYR A:52 A:52 133.0 0.578 T -110.6 -7.2 133.0 0.578 0.0 HOH
2.514
HE1
O
5emy 1 P04746 98.59 0.0 X-RAY
2016-07-06 TYR A:52 A:52 134.0 0.583 T -105.8 -13.8 134.0 0.583 0.0 HOH
2.025
H
O
5kez 1 P04746 98.59 0.0 X-RAY
2017-03-29 TYR A:52 A:52 131.0 0.57 T -105.3 -12.9 131.0 0.57 0.0 HOH
2.670
O
O
5u3a 1 P04746 98.59 0.0 X-RAY
2017-12-06 TYR A:52 A:52 133.0 0.578 T -107.0 -14.7 133.0 0.578 0.0 HOH
2.063
H
O
5va9 1 P04746 98.59 0.0 X-RAY
2018-03-28 TYR A:52 A:52 136.0 0.591 T -105.0 -10.1 136.0 0.591 0.0 HOH
3.461
O
O
TYR B:52 B:52 136.0 0.591 T -104.3 -10.8 NA NA NA
6obx 1 P04746 98.59 0.0 X-RAY
2020-02-12 TYR A:52 A:52 135.0 0.587 T -103.7 -17.4 135.0 0.587 0.0 MPD
HOH
8.260
2.031
H
H
H53
O
6ocn 1 P04746 98.59 0.0 X-RAY
2020-02-12 TYR A:52 A:52 132.0 0.574 T -106.1 -15.6 132.0 0.574 0.0 HOH
2.057
H
O
1xgz 1 P04746 98.39 0.0 X-RAY
2005-05-24 TYR A:52 A:52 141.0 0.613 T -108.3 -6.2 141.0 0.613 0.0 HOH
2.940
N
O
1xh0 1 P04746 98.39 0.0 X-RAY
2005-05-24 TYR A:52 A:52 135.0 0.587 T -103.0 -10.5 135.0 0.587 0.0 HOH
3.208
OH
O
1xh1 1 P04746 98.39 0.0 X-RAY
2005-05-24 TYR A:52 A:52 139.0 0.604 T -117.4 -10.2 139.0 0.604 0.0 HOH
2.915
O
O
1xh2 1 P04746 98.39 0.0 X-RAY
2005-05-24 TYR A:52 A:52 136.0 0.591 T -103.2 -6.4 136.0 0.591 0.0 HOH
2.718
OH
O
3bak 1 P04746 98.39 0.0 X-RAY
2008-03-25 TYR A:52 A:52 136.0 0.591 T -106.3 -6.3 136.0 0.591 0.0 HOH
3.114
OH
O
3bax 1 P04746 98.39 0.0 X-RAY
2008-03-25 TYR A:52 A:52 136.0 0.591 T -105.3 -8.1 136.0 0.591 0.0 HOH
2.951
N
O
3bay 1 P04746 98.39 0.0 X-RAY
2008-03-25 TYR A:52 A:52 131.0 0.57 T -104.8 -3.7 131.0 0.57 0.0 HOH
2.970
CE1
O
1kgw 1 P04746 98.39 0.0 X-RAY
2002-01-16 TYR A:52 A:52 132.0 0.574 T -103.7 3.5 132.0 0.574 0.0 HOH
3.074
N
O
2cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 TYR A:52 A:52 137.0 0.596 T -107.3 -7.9 137.0 0.596 0.0 HOH
3.103
CE1
O
3cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 TYR A:52 A:52 132.0 0.574 T -100.8 -3.4 132.0 0.574 0.0 HOH
2.726
N
O
5td4 1 P04746 98.39 0.0 X-RAY
2016-11-02 TYR A:52 A:52 121.0 0.526 T -106.1 -6.3 121.0 0.526 0.0 GLC
GLC
GLC
GLC
HOH
7.912
5.755
7.801
7.345
7.770
O
O
O
OH
CE1
O3
O3
O6
C6
O
1kgx 1 P04746 98.39 0.0 X-RAY
2002-01-16 TYR A:52 A:52 138.0 0.6 B -108.5 1.1 138.0 0.6 0.0 HOH
3.130
CE1
O
1kbb 1 P04746 98.39 0.0 X-RAY
2002-04-10 TYR A:52 A:52 132.0 0.574 T -99.2 -3.4 132.0 0.574 0.0 HOH
4.657
N
O
1kgu 1 P04746 98.39 0.0 X-RAY
2002-01-16 TYR A:52 A:52 135.0 0.587 T -100.8 -6.4 135.0 0.587 0.0 HOH
3.178
OH
O
1kb3 1 P04746 98.39 0.0 X-RAY
2002-05-01 TYR A:52 A:52 143.0 0.622 B -104.7 2.7 143.0 0.622 0.0 HOH
3.347
N
O
1kbk 1 P04746 98.39 0.0 X-RAY
2002-04-10 TYR A:52 A:52 137.0 0.596 T -104.3 -13.6 137.0 0.596 0.0 HOH
4.785
N
O
1c8q 1 P04745 97.58 0.0 X-RAY
2001-06-13 HIS A:52 A:52 108.0 0.554 T -92.0 -4.9 108.0 0.554 0.0 HOH
2.663
ND1
O
1mfv 1 P04745 97.58 0.0 X-RAY
2002-11-20 HIS A:52 A:52 104.0 0.533 T -105.7 -8.8 104.0 0.533 0.0 HOH
3.108
NE2
O
1smd 1 P04745 97.58 0.0 X-RAY
1996-07-11 HIS A:52 A:52 108.0 0.554 T -100.2 -12.4 108.0 0.554 0.0 HOH
2.933
NE2
O
1xv8 1 P04745 97.58 0.0 X-RAY
2005-10-11 HIS A:52 A:52 114.0 0.585 T -97.7 -1.1 114.0 0.585 0.0 HOH
3.496
N
O
HIS B:52 B:52 113.0 0.579 T -97.7 -1.1 113.0 0.579 0.0 HOH
3.496
N
O
1q4n 1 P04745 97.38 0.0 X-RAY
2004-03-16 HIS A:52 X:52 106.0 0.544 T -102.0 -10.8 106.0 0.544 0.0 HOH
2.364
O
O
1z32 1 P04745 97.38 0.0 X-RAY
2005-05-31 HIS A:52 X:52 106.0 0.544 T -106.1 -10.3 106.0 0.544 0.0 HOH
3.280
NE2
O
1jxj 1 P04745 97.38 0.0 X-RAY
2001-09-14 HIS A:52 A:52 107.0 0.549 T -103.7 -10.4 107.0 0.549 0.0 HOH
3.043
NE2
O
1nm9 1 P04745 97.38 0.0 X-RAY
2004-01-20 HIS A:52 A:52 107.0 0.549 T -102.5 -11.3 107.0 0.549 0.0 HOH
3.243
NE2
O
3blk 1 P04745 97.38 0.0 X-RAY
2008-11-25 HIS A:52 A:52 112.0 0.574 T -103.0 -12.0 112.0 0.574 0.0 HOH
4.468
N
O
3blp 1 P04745 97.38 0.0 X-RAY
2008-11-18 HIS A:52 X:52 109.0 0.559 T -101.0 -15.1 109.0 0.559 0.0 HOH
2.604
O
O
1jxk 1 P04745 96.57 0.0 X-RAY
2001-09-14 HIS A:52 A:52 108.0 0.554 T -103.5 -9.0 108.0 0.554 0.0 HOH
2.858
N
O
1mfu 1 P04745 96.57 0.0 X-RAY
2002-11-20 HIS A:52 A:52 99.0 0.508 T -106.2 -12.6 99.0 0.508 0.0 HOH
2.577
O
O
3dhp 1 P04745 96.37 0.0 X-RAY
2008-07-01 HIS A:52 A:52 110.0 0.564 T -106.5 -7.1 110.0 0.564 0.0 HOH
3.059
ND1
O
1kxq 1 P00690 87.1 0.0 X-RAY
2002-06-19 THR A:52 A:52 112.0 0.8 T -110.3 -15.2 94.0 0.671 0.129 H:None:0.129
HOH
2.682
OG1
O
THR B:52 B:52 109.0 0.779 T -104.8 -15.8 NA NA NA
THR C:52 C:52 110.0 0.786 T -105.9 -16.2 NA NA NA
THR D:52 D:52 105.0 0.75 T -107.3 -12.0 NA NA NA
1kxt 1 P00690 87.1 0.0 X-RAY
2002-06-19 THR A:52 A:52 109.0 0.779 B -109.7 -5.0 109.0 0.779 0.0 HOH
3.805
OG1
O
THR C:52 C:52 114.0 0.814 T -82.6 -19.9 NA NA NA
THR E:52 E:52 111.0 0.793 T -107.5 -10.4 NA NA NA
1kxv 1 P00690 87.1 0.0 X-RAY
2002-06-19 THR A:52 A:52 113.0 0.807 T -104.1 -17.3 113.0 0.807 0.0 HOH
2.765
N
O
THR B:52 B:52 115.0 0.821 T -105.0 -15.0 NA NA NA
1dhk 1 P00690 87.1 0.0 X-RAY
1997-12-24 THR A:52 A:52 112.0 0.8 T -102.7 -11.6 112.0 0.8 0.0 HOH
2.771
O
H2
1ppi 1 P00690 87.1 0.0 X-RAY
1995-05-24 THR A:52 A:52 111.0 0.793 T -101.8 -21.0 111.0 0.793 0.0 HOH
2.829
N
O
3l2l 1 P00690 86.9 0.0 X-RAY
2010-04-14 THR A:52 A:52 117.0 0.836 T -96.4 -15.5 117.0 0.836 0.0 GLC
GLC
GLC
GLC
GLC
GLC
HOH
4.121
2.200
2.103
5.207
9.323
6.681
2.128
OG1
HG1
O
O
H
H
H
O3
O3
HO3
HO2
O6
H2
O
3l2m 1 P00690 86.9 0.0 X-RAY
2010-04-14 THR A:52 A:52 106.0 0.757 T -110.3 -12.3 106.0 0.757 0.0 GLC
GLC
GLC
GLC
GLC
GLC
GLC
HOH
2.377
3.078
4.929
7.025
6.377
3.726
9.427
2.082
HG1
O
O
C
H
OG1
H
H
HO3
HO2
HO2
HO2
H3
HO3
HO6
O
1ua3 1 P00690 86.9 0.0 X-RAY
2003-10-14 THR A:52 A:52 110.0 0.786 T -103.5 -15.5 110.0 0.786 0.0 HOH
3.189
N
O
1vah 1 P00690 86.9 0.0 X-RAY
2005-04-26 THR A:52 A:52 108.0 0.771 T -100.9 -1.4 108.0 0.771 0.0 HOH
4.871
CG2
O
1jfh 1 P00690 86.9 0.0 X-RAY
1998-12-02 THR A:52 A:52 112.0 0.8 T -96.9 -17.3 112.0 0.8 0.0 HOH
3.112
N
O
1ose 1 P00690 86.69 0.0 X-RAY
1997-04-01 THR A:52 A:52 108.0 0.771 T -96.7 -11.3 108.0 0.771 0.0 HOH
2.899
OG1
O
1hx0 1 P00690 86.69 0.0 X-RAY
2001-08-08 THR A:52 A:52 112.0 0.8 T -102.5 -14.0 112.0 0.8 0.0 EDO
HOH
6.151
2.610
CG2
OG1
O2
O
1wo2 1 P00690 86.69 0.0 X-RAY
2005-03-15 THR A:52 A:52 115.0 0.821 T -99.1 -10.8 115.0 0.821 0.0 EDO
EDO
HOH
6.941
8.731
2.596
N
CG2
OG1
C1
O2
O
1bvn 1 P00690 86.69 0.0 X-RAY
1998-09-23 THR A:52 P:52 102.0 0.729 T -82.5 -7.7 102.0 0.729 0.0 HOH
2.592
N
O
1pif 1 P00690 86.49 0.0 X-RAY
1996-12-07 THR A:52 A:52 111.0 0.793 T -96.0 -6.8 111.0 0.793 0.0 HOH
2.752
OG1
O
1pig 1 P00690 86.49 0.0 X-RAY
1996-12-07 THR A:52 A:52 116.0 0.829 T -103.4 -8.8 116.0 0.829 0.0 HOH
2.946
N
O
4x0n 1 P00690 86.49 0.0 X-RAY
2015-11-25 THR A:52 A:52 104.0 0.743 T -103.9 -14.4 104.0 0.743 0.0 HOH
3.669
CG2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19961-f1 1 P19961 100.0 0.0 HIS A:67 A:67 114.0 0.585 T -102.8 -12.6
af-p04746-f1 1 P04746 98.83 0.0 TYR A:67 A:67 137.0 0.596 T -108.6 -6.6
af-p0dte7-f1 1 P0DTE7 97.46 0.0 HIS A:67 A:67 111.0 0.569 T -102.0 -12.4
af-p0dte8-f1 1 P0DTE8 97.46 0.0 HIS A:67 A:67 115.0 0.59 T -102.3 -11.9
af-p0dub6-f1 1 P0DUB6 97.46 0.0 HIS A:67 A:67 112.0 0.574 T -101.4 -11.4