Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104114784 . G A CCDS782.1:NM_020978.4:c.221tGg>tAg_NP_066188.1:p.74W>* Homo sapiens amylase, alpha 2B (pancreatic) (AMY2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3old 1 P04746 98.99 0.0 X-RAY
2011-04-13 TRP A:59 A:59 69.0 0.271 G -71.6 -1.7 69.0 0.271 0.0 GLC
GLC
G6D
ACI
MPD
HOH
2.700
3.761
8.334
5.152
6.509
3.162
O
CE3
CB
CB
CD1
NE1
O6
C1
C6
O4
C1
O
3ole 1 P04746 98.99 0.0 X-RAY
2011-04-13 TRP A:59 A:59 72.0 0.282 G -70.0 -3.6 72.0 0.282 0.0 GLC
G6D
G6D
ACI
ACI
MPD
HOH
2.616
3.695
8.110
6.992
5.149
6.442
4.592
O
CE3
CB
CZ3
CB
CD1
N
O6
C1
C6
N1
O4
C1
O
3olg 1 P04746 98.99 0.0 X-RAY
2011-04-13 TRP A:59 A:59 69.0 0.271 G -65.8 -5.1 69.0 0.271 0.0 GLC
G6D
G6D
HSD
HSD
HOH
2.711
3.624
8.225
7.122
5.080
3.000
O
CE3
CB
CH2
CB
NE1
O6
C1
C6
C2
O2
O
3oli 1 P04746 98.99 0.0 X-RAY
2011-04-13 TRP A:59 A:59 68.0 0.267 G -71.5 -3.3 68.0 0.267 0.0 GLC
G6D
G6D
HSD
HSD
HOH
2.626
3.592
8.264
6.951
5.180
3.009
O
CE3
CB
CZ3
CB
NE1
O6
C1
C6
N1
O2
O
6z8l 1 P04746 98.79 0.0 X-RAY
2020-12-02 TRP A:59 A:59 67.0 0.263 G -74.7 -3.8 67.0 0.263 0.0 GLC
GLC
GLC
GLC
GLC
HOH
2.264
2.725
8.227
9.328
6.519
2.309
O
CE3
HB3
HH2
HZ2
HE1
HO6
H1
H62
O4
HO4
O
1b2y 1 P04746 98.79 0.0 X-RAY
2000-02-16 TRP A:59 A:59 70.0 0.275 G -74.9 -4.6 70.0 0.275 0.0 AC1
GLC
G6D
HOH
5.098
2.517
3.609
3.998
CB
O
CE2
CZ2
O4
O6
O2
O
1bsi 1 P04746 98.59 0.0 X-RAY
1999-05-18 TRP A:59 A:59 70.0 0.275 G -71.4 -3.9 70.0 0.275 0.0 HOH
3.113
NE1
O
1cpu 1 P04746 98.59 0.0 X-RAY
1999-06-14 TRP A:59 A:59 67.0 0.263 G -74.4 -3.1 67.0 0.263 0.0 AGL
GLC
GLC
HMC
HOH
8.154
2.667
3.718
5.130
3.242
CB
O
CE3
CB
NE1
C6
O6
C1
O4
O
1hny 1 P04746 98.59 0.0 X-RAY
1996-03-08 TRP A:59 A:59 78.0 0.306 G -70.5 -10.0 78.0 0.306 0.0 HOH
2.847
O
O
1u2y 1 P04746 98.59 0.0 X-RAY
2004-09-07 TRP A:59 A:59 71.0 0.278 G -73.2 -2.6 71.0 0.278 0.0 GOX
HOH
6.541
3.081
CB
NE1
O7
O
1u30 1 P04746 98.59 0.0 X-RAY
2004-09-07 TRP A:59 A:59 70.0 0.275 G -69.8 -7.6 70.0 0.275 0.0 LAG
HOH
2.698
3.128
O
NE1
OB6
O
1u33 1 P04746 98.59 0.0 X-RAY
2004-09-07 TRP A:59 A:59 67.0 0.263 G -63.6 -9.2 67.0 0.263 0.0 LM2
HOH
2.510
3.025
O
NE1
OB6
O
1xcw 1 P04746 98.59 0.0 X-RAY
2004-12-07 TRP A:59 A:59 66.0 0.259 G -69.4 -1.8 66.0 0.259 0.0 AC1
HOH
5.016
3.414
CB
NE1
O4
O
1xcx 1 P04746 98.59 0.0 X-RAY
2004-12-07 TRP A:59 A:59 72.0 0.282 G -70.6 -1.0 72.0 0.282 0.0 AC1
HOH
4.881
3.167
CB
NE1
O4
O
1xd0 1 P04746 98.59 0.0 X-RAY
2004-12-07 TRP A:59 A:59 72.0 0.282 G -68.1 -7.6 72.0 0.282 0.0 ARE
HOH
2.621
3.067
O
NE1
O6B
O
1xd1 1 P04746 98.59 0.0 X-RAY
2004-12-07 TRP A:59 A:59 77.0 0.302 G -75.6 1.8 77.0 0.302 0.0 6SA
HOH
2.588
3.344
O
NE1
OP6
O
2qmk 1 P04746 98.59 0.0 X-RAY
2008-03-25 TRP A:59 A:59 67.0 0.263 G -71.8 -5.4 67.0 0.263 0.0 HOH
2.885
O
O
2qv4 1 P04746 98.59 0.0 X-RAY
2008-03-25 TRP A:59 A:59 78.0 0.306 G -66.6 -4.0 78.0 0.306 0.0 QV4
HOH
2.733
2.989
O
NE1
O6B
O
3bai 1 P04746 98.59 0.0 X-RAY
2008-03-25 TRP A:59 A:59 78.0 0.306 G -69.7 -4.1 78.0 0.306 0.0 HOH
3.067
NE1
O
3baj 1 P04746 98.59 0.0 X-RAY
2008-03-25 TRP A:59 A:59 77.0 0.302 G -70.5 -3.8 77.0 0.302 0.0 ARE
HOH
2.978
3.078
O
NE1
O6B
O
3baw 1 P04746 98.59 0.0 X-RAY
2008-03-25 TRP A:59 A:59 66.0 0.259 G -70.2 -3.0 66.0 0.259 0.0 NA
HOH
9.167
2.661
CB
O
NA
O
3ij7 1 P04746 98.59 0.0 X-RAY
2009-10-27 TRP A:59 A:59 69.0 0.271 G -70.7 -5.6 69.0 0.271 0.0 B9D
BGC
B8D
HOH
4.941
2.705
3.841
3.035
CB
O
CE3
NE1
O2
O6
C1
O
3ij8 1 P04746 98.59 0.0 X-RAY
2009-10-27 TRP A:59 A:59 69.0 0.271 G -72.5 -5.5 69.0 0.271 0.0 B0D
B9D
HOH
8.034
5.004
2.899
CB
CB
O
F2
O2
O
3ij9 1 P04746 98.59 0.0 X-RAY
2009-10-27 TRP A:59 A:59 69.0 0.271 G -70.9 -6.7 69.0 0.271 0.0 B9D
BGC
HOH
5.031
2.821
3.014
CB
O
NE1
O2
O6
O
4gqq 1 P04746 98.59 0.0 X-RAY
2012-10-24 TRP A:59 A:59 53.0 0.208 G -69.7 -13.0 53.0 0.208 0.0 HOH
3.804
CB
O
4gqr 1 P04746 98.59 0.0 X-RAY
2012-10-24 TRP A:59 A:59 84.0 0.329 G -70.4 -5.9 84.0 0.329 0.0 MYC
HOH
3.227
4.094
CE3
CH2
O13
O
4w93 1 P04746 98.59 0.0 X-RAY
2015-07-15 TRP A:59 A:59 84.0 0.329 G -77.2 -4.2 84.0 0.329 0.0 3L9
HOH
3.340
2.886
CG
O
O6D
O
4x9y 1 P04746 98.59 0.0 X-RAY
2014-12-31 TRP A:59 A:59 84.0 0.329 G -74.9 -6.0 84.0 0.329 0.0 HOH
2.306
HE1
O
5e0f 1 P04746 98.59 0.0 X-RAY
2016-09-07 TRP A:59 A:59 82.0 0.322 G -75.1 -3.8 82.0 0.322 0.0 5J7
HOH
2.758
2.343
CE2
HE1
H532
O
5emy 1 P04746 98.59 0.0 X-RAY
2016-07-06 TRP A:59 A:59 68.0 0.267 G -76.9 -4.3 68.0 0.267 0.0 5QP
HOH
1.966
2.258
O
HE1
HO6
O
5kez 1 P04746 98.59 0.0 X-RAY
2017-03-29 TRP A:59 A:59 80.0 0.314 G -81.4 3.1 5.0 0.02 0.294 B:None:0.294
HOH
2.820
NE1
O
5u3a 1 P04746 98.59 0.0 X-RAY
2017-12-06 TRP A:59 A:59 83.0 0.325 G -75.8 -4.6 83.0 0.325 0.0 HOH
2.281
HE1
O
5va9 1 P04746 98.59 0.0 X-RAY
2018-03-28 TRP A:59 A:59 81.0 0.318 G -77.1 -1.3 10.0 0.039 0.279 C:None:0.278
HOH
3.254
NE1
O
TRP B:59 B:59 82.0 0.322 G -78.3 -2.2 NA NA NA
6obx 1 P04746 98.59 0.0 X-RAY
2020-02-12 TRP A:59 A:59 85.0 0.333 G -76.6 -4.8 85.0 0.333 0.0 ZXU
MPD
HOH
2.697
3.923
2.193
CE2
HZ3
HE1
HB3
HO4
O
6ocn 1 P04746 98.59 0.0 X-RAY
2020-02-12 TRP A:59 A:59 34.0 0.133 G -75.6 -4.7 34.0 0.133 0.0 ZXY
HOH
2.395
2.238
HB2
HE1
HD2
O
1xgz 1 P04746 98.39 0.0 X-RAY
2005-05-24 TRP A:59 A:59 76.0 0.298 G -73.7 -1.2 76.0 0.298 0.0 HOH
3.009
NE1
O
1xh0 1 P04746 98.39 0.0 X-RAY
2005-05-24 TRP A:59 A:59 70.0 0.275 G -73.0 -2.3 70.0 0.275 0.0 AAO
HOH
2.613
3.104
O
NE1
O6B
O
1xh1 1 P04746 98.39 0.0 X-RAY
2005-05-24 TRP A:59 A:59 74.0 0.29 G -74.8 -4.1 74.0 0.29 0.0 HOH
2.999
O
O
1xh2 1 P04746 98.39 0.0 X-RAY
2005-05-24 TRP A:59 A:59 72.0 0.282 G -73.7 -4.8 72.0 0.282 0.0 ARE
HOH
2.697
3.140
O
NE1
O6B
O
3bak 1 P04746 98.39 0.0 X-RAY
2008-03-25 TRP A:59 A:59 79.0 0.31 G -71.7 -4.5 79.0 0.31 0.0 HOH
3.127
NE1
O
3bax 1 P04746 98.39 0.0 X-RAY
2008-03-25 TRP A:59 A:59 71.0 0.278 G -72.2 -3.1 71.0 0.278 0.0 NA
HOH
9.182
2.880
CB
O
NA
O
3bay 1 P04746 98.39 0.0 X-RAY
2008-03-25 TRP A:59 A:59 75.0 0.294 G -69.4 -0.9 75.0 0.294 0.0 ARE
HOH
2.805
3.194
O
NE1
O6B
O
1kgw 1 P04746 98.39 0.0 X-RAY
2002-01-16 TRP A:59 A:59 74.0 0.29 G -75.1 -1.5 74.0 0.29 0.0 HOH
3.905
CZ2
O
2cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 TRP A:59 A:59 76.0 0.298 G -74.9 -5.2 76.0 0.298 0.0 HOH
3.076
NE1
O
3cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 TRP A:59 A:59 71.0 0.278 G -73.6 2.4 71.0 0.278 0.0 GLC
GLC
HOH
2.773
3.784
4.662
O
CE3
N
O6
C1
O
5td4 1 P04746 98.39 0.0 X-RAY
2016-11-02 TRP A:59 A:59 67.0 0.263 G -82.5 -0.3 67.0 0.263 0.0 GLC
GLC
GLC
GLC
GLC
GLC
GLC
HOH
7.716
5.754
7.365
5.318
2.644
3.531
7.571
3.010
CZ2
CZ2
CB
CB
O
CE3
CH2
NE1
O3
O2
O6
O4
O6
C1
C1
O
1kgx 1 P04746 98.39 0.0 X-RAY
2002-01-16 TRP A:59 A:59 70.0 0.275 G -76.3 -3.4 70.0 0.275 0.0 HOH
3.071
NE1
O
1kbb 1 P04746 98.39 0.0 X-RAY
2002-04-10 TRP A:59 A:59 85.0 0.333 G -74.5 -1.6 85.0 0.333 0.0 HOH
4.708
N
O
1kgu 1 P04746 98.39 0.0 X-RAY
2002-01-16 TRP A:59 A:59 70.0 0.275 G -77.2 -0.8 70.0 0.275 0.0 HOH
3.013
O
O
1kb3 1 P04746 98.39 0.0 X-RAY
2002-05-01 TRP A:59 A:59 70.0 0.275 G -73.9 -2.9 70.0 0.275 0.0 HOH
3.037
NE1
O
1kbk 1 P04746 98.39 0.0 X-RAY
2002-04-10 TRP A:59 A:59 77.0 0.302 G -71.8 -4.2 77.0 0.302 0.0 HOH
2.996
NE1
O
1c8q 1 P04745 97.58 0.0 X-RAY
2001-06-13 TRP A:59 A:59 70.0 0.275 G -70.3 -4.3 70.0 0.275 0.0 HOH
3.990
CZ2
O
1mfv 1 P04745 97.58 0.0 X-RAY
2002-11-20 TRP A:59 A:59 69.0 0.271 G -75.1 -5.1 69.0 0.271 0.0 GLC
AGL
AGL
HMC
HMC
HOH
2.619
3.730
8.156
7.485
5.063
3.011
O
CE3
CB
CH2
CB
NE1
O6
C1
C6
C1
O4
O
1smd 1 P04745 97.58 0.0 X-RAY
1996-07-11 TRP A:59 A:59 80.0 0.314 G -71.9 1.8 80.0 0.314 0.0 HOH
3.165
O
O
1xv8 1 P04745 97.58 0.0 X-RAY
2005-10-11 TRP A:59 A:59 83.0 0.325 T -107.8 8.6 83.0 0.325 0.0 HOH
2.695
O
O
TRP B:59 B:59 81.0 0.318 T -107.8 8.6 81.0 0.318 0.0 HOH
2.695
O
O
1q4n 1 P04745 97.38 0.0 X-RAY
2004-03-16 TRP A:59 X:59 75.0 0.294 G -76.4 -4.8 75.0 0.294 0.0 TAM
HOH
5.724
3.174
CB
NE1
C5
O
1z32 1 P04745 97.38 0.0 X-RAY
2005-05-31 TRP A:59 X:59 68.0 0.267 G -73.0 -5.7 68.0 0.267 0.0 GLC
AGL
HMC
HOH
2.724
7.925
4.997
2.998
O
CB
CB
NE1
O6
C6
O4
O
1jxj 1 P04745 97.38 0.0 X-RAY
2001-09-14 TRP A:59 A:59 96.0 0.376 G -73.2 -8.8 96.0 0.376 0.0 HOH
2.783
O
O
1nm9 1 P04745 97.38 0.0 X-RAY
2004-01-20 TRP A:59 A:59 88.0 0.345 G -72.6 -6.6 88.0 0.345 0.0 AGL
HMC
HOH
8.076
4.899
3.403
CB
CB
NE1
C6
O4
O
3blk 1 P04745 97.38 0.0 X-RAY
2008-11-25 TRP A:59 A:59 70.0 0.275 G -72.7 -4.8 70.0 0.275 0.0 GLC
AGL
AGL
HMC
HOH
2.757
3.788
8.419
5.199
3.143
O
CE3
CB
CB
NE1
O6
C1
C6
O4
O
3blp 1 P04745 97.38 0.0 X-RAY
2008-11-18 TRP A:59 X:59 68.0 0.267 G -78.1 -2.0 68.0 0.267 0.0 GLC
AGL
AGL
HMC
HOH
2.655
3.784
8.238
5.173
3.088
O
CE3
CB
CB
NE1
O6
C1
C6
O4
O
1jxk 1 P04745 96.57 0.0 X-RAY
2001-09-14 TRP A:59 A:59 85.0 0.333 G -71.3 -6.7 85.0 0.333 0.0 HOH
2.765
O
O
1mfu 1 P04745 96.57 0.0 X-RAY
2002-11-20 TRP A:59 A:59 82.0 0.322 G -74.9 -5.2 82.0 0.322 0.0 GLC
AGL
AGL
HMC
HMC
HOH
2.609
3.748
8.183
7.695
5.138
3.026
O
CE3
CB
CH2
CB
NE1
O6
C1
C6
C1
O4
O
3dhp 1 P04745 96.37 0.0 X-RAY
2008-07-01 TRP A:59 A:59 70.0 0.275 G -73.3 -7.6 70.0 0.275 0.0 AGL
GLC
HMC
HOH
8.357
2.827
4.909
2.990
CB
O
CB
NE1
C6
O6
O4
O
1kxq 1 P00690 87.1 0.0 X-RAY
2002-06-19 TRP A:59 A:59 82.0 0.322 G -73.0 -3.7 4.0 0.016 0.306 H:None:0.306
HOH
2.802
O
O
TRP B:59 B:59 80.0 0.314 G -69.5 -5.1 NA NA NA
TRP C:59 C:59 83.0 0.325 G -70.0 -7.8 NA NA NA
TRP D:59 D:59 80.0 0.314 G -71.7 -4.7 NA NA NA
1kxt 1 P00690 87.1 0.0 X-RAY
2002-06-19 TRP A:59 A:59 84.0 0.329 G -65.6 -7.8 84.0 0.329 0.0 HOH
3.069
O
O
TRP C:59 C:59 83.0 0.325 G -70.5 4.3 NA NA NA
TRP E:59 E:59 80.0 0.314 G -68.5 -10.1 NA NA NA
1kxv 1 P00690 87.1 0.0 X-RAY
2002-06-19 TRP A:59 A:59 84.0 0.329 G -70.3 -6.5 84.0 0.329 0.0 HOH
2.884
O
O
TRP B:59 B:59 86.0 0.337 G -74.2 -3.1 NA NA NA
1dhk 1 P00690 87.1 0.0 X-RAY
1997-12-24 TRP A:59 A:59 87.0 0.341 G -72.6 -6.9 22.0 0.086 0.255 B:P02873:0.255
HOH
2.534
O
H2
1ppi 1 P00690 87.1 0.0 X-RAY
1995-05-24 TRP A:59 A:59 69.0 0.271 G -78.4 -0.7 69.0 0.271 0.0 GLC
GLC
DAF
HOH
2.782
3.624
5.242
3.137
O
CE3
CB
NE1
O6
C1
O4H
O
3l2l 1 P00690 86.9 0.0 X-RAY
2010-04-14 TRP A:59 A:59 81.0 0.318 G -74.1 -4.5 81.0 0.318 0.0 GLC
GLC
GLC
GLC
GLC
GLC
GLC
GLC
GLC
HOH
8.666
9.585
8.872
6.741
5.139
2.199
2.645
6.173
2.782
2.221
HZ3
HH2
HH2
HZ2
HB2
O
CE3
HH2
HZ3
HE1
HO2
H3
H3
O3
O4
HO6
H1
H1
H1
O
3l2m 1 P00690 86.9 0.0 X-RAY
2010-04-14 TRP A:59 A:59 81.0 0.318 G -78.3 -5.0 81.0 0.318 0.0 GLC
GLC
GLC
GLC
GLC
GLC
GLC
GLC
GLC
GLC
HOH
9.722
8.617
5.269
2.828
4.943
8.375
2.688
5.106
6.798
2.790
2.112
HH2
HH2
HZ2
HH2
HH2
HZ3
CD2
HH2
HB3
HB2
HE1
H3
O4
O3
HO3
HO2
HO2
H1
H1
HO6
H62
O
1ua3 1 P00690 86.9 0.0 X-RAY
2003-10-14 TRP A:59 A:59 82.0 0.322 G -78.0 -4.0 82.0 0.322 0.0 GLC
GLC
GLC
HOH
4.994
2.686
3.599
2.886
CB
O
CZ3
NE1
O4
O6
C1
O
1vah 1 P00690 86.9 0.0 X-RAY
2005-04-26 TRP A:59 A:59 83.0 0.325 G -75.0 -3.3 83.0 0.325 0.0 NPO
HOH
3.297
4.743
CE3
CD1
OH
O
1jfh 1 P00690 86.9 0.0 X-RAY
1998-12-02 TRP A:59 A:59 70.0 0.275 G -71.7 -4.6 70.0 0.275 0.0 MA3
MA2
GLC
HOH
2.835
3.606
7.914
3.011
O
CZ2
CB
NE1
O6
O2
C6
O
1ose 1 P00690 86.69 0.0 X-RAY
1997-04-01 TRP A:59 A:59 73.0 0.286 G -73.0 -8.4 73.0 0.286 0.0 AC1
GLC
AC1
HOH
5.184
2.558
3.701
3.021
CB
O
CE3
NE1
O4
O6
C1
O
1hx0 1 P00690 86.69 0.0 X-RAY
2001-08-08 TRP A:59 A:59 68.0 0.267 G -76.9 -2.1 68.0 0.267 0.0 AC1
GLC
AC1
HOH
5.309
2.714
3.555
2.906
CB
O
CE3
NE1
O4
O6
C1
O
1wo2 1 P00690 86.69 0.0 X-RAY
2005-03-15 TRP A:59 A:59 82.0 0.322 G -70.5 -4.6 82.0 0.322 0.0 BGC
GLC
GLC
EDO
HOH
5.078
2.679
3.722
3.545
2.979
CB
O
CE3
CZ3
NE1
O4
O6
C1
O1
O
1bvn 1 P00690 86.69 0.0 X-RAY
1998-09-23 TRP A:59 P:59 85.0 0.333 G -77.2 9.7 13.0 0.051 0.282 B:P01092:0.282
HOH
4.719
N
O
1pif 1 P00690 86.49 0.0 X-RAY
1996-12-07 TRP A:59 A:59 80.0 0.314 G -75.3 -6.1 80.0 0.314 0.0 HOH
2.709
O
O
1pig 1 P00690 86.49 0.0 X-RAY
1996-12-07 TRP A:59 A:59 68.0 0.267 G -73.8 -6.2 68.0 0.267 0.0 GLC
AGL
AGL
HMC
HOH
2.777
3.697
8.382
5.254
3.069
O
CE3
CB
CB
NE1
O6
C1
C6
O4
O
4x0n 1 P00690 86.49 0.0 X-RAY
2015-11-25 TRP A:59 A:59 81.0 0.318 G -77.2 -2.2 6.0 0.024 0.294 B:None:0.294
GOL
HOH
5.271
4.828
CD1
N
O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19961-f1 1 P19961 100.0 0.0 TRP A:74 A:74 77.0 0.302 G -70.4 -8.4
af-p04746-f1 1 P04746 98.83 0.0 TRP A:74 A:74 69.0 0.271 G -69.9 -7.9
af-p0dte7-f1 1 P0DTE7 97.46 0.0 TRP A:74 A:74 73.0 0.286 G -70.6 -8.1
af-p0dte8-f1 1 P0DTE8 97.46 0.0 TRP A:74 A:74 76.0 0.298 G -70.8 -8.1
af-p0dub6-f1 1 P0DUB6 97.46 0.0 TRP A:74 A:74 70.0 0.275 G -71.6 -7.2