Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104117871 . T A CCDS782.1:NM_020978.4:c.905aTg>aAg_NP_066188.1:p.302M>K Homo sapiens amylase, alpha 2B (pancreatic) (AMY2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3old 1 P04746 98.99 0.0 X-RAY
2011-04-13 MET A:287 A:287 12.0 0.065 -71.9 170.4 12.0 0.065 0.0 HOH
3.414
N
O
3ole 1 P04746 98.99 0.0 X-RAY
2011-04-13 MET A:287 A:287 13.0 0.07 -72.5 171.4 13.0 0.07 0.0 HOH
3.413
N
O
3olg 1 P04746 98.99 0.0 X-RAY
2011-04-13 MET A:287 A:287 15.0 0.081 -64.3 173.0 15.0 0.081 0.0 HOH
3.405
N
O
3oli 1 P04746 98.99 0.0 X-RAY
2011-04-13 MET A:287 A:287 13.0 0.07 -71.6 171.5 13.0 0.07 0.0 HOH
3.571
N
O
6z8l 1 P04746 98.79 0.0 X-RAY
2020-12-02 MET A:287 A:287 12.0 0.065 -69.1 174.3 12.0 0.065 0.0 HOH
2.916
HA
O
1b2y 1 P04746 98.79 0.0 X-RAY
2000-02-16 VAL A:287 A:287 14.0 0.09 -67.9 165.8 14.0 0.09 0.0 HOH
4.835
CG1
O
1bsi 1 P04746 98.59 0.0 X-RAY
1999-05-18 VAL A:287 A:287 11.0 0.071 -68.3 163.7 11.0 0.071 0.0 HOH
4.231
CG1
O
1cpu 1 P04746 98.59 0.0 X-RAY
1999-06-14 VAL A:287 A:287 13.0 0.084 -66.9 162.7 13.0 0.084 0.0 HOH
3.683
CG1
O
1hny 1 P04746 98.59 0.0 X-RAY
1996-03-08 VAL A:287 A:287 12.0 0.077 -62.9 162.0 12.0 0.077 0.0 HOH
3.444
CG1
O
1u2y 1 P04746 98.59 0.0 X-RAY
2004-09-07 VAL A:287 A:287 13.0 0.084 -68.1 164.9 13.0 0.084 0.0 HOH
3.628
CG1
O
1u30 1 P04746 98.59 0.0 X-RAY
2004-09-07 VAL A:287 A:287 11.0 0.071 -66.3 158.1 11.0 0.071 0.0 HOH
3.396
CG1
O
1u33 1 P04746 98.59 0.0 X-RAY
2004-09-07 VAL A:287 A:287 14.0 0.09 -68.5 165.0 14.0 0.09 0.0 HOH
3.398
CG1
O
1xcw 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:287 A:287 13.0 0.084 -66.0 160.3 13.0 0.084 0.0 HOH
4.008
CG1
O
1xcx 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:287 A:287 14.0 0.09 -68.1 164.2 14.0 0.09 0.0 HOH
3.685
CG1
O
1xd0 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:287 A:287 13.0 0.084 -67.4 160.9 13.0 0.084 0.0 HOH
3.431
CG1
O
1xd1 1 P04746 98.59 0.0 X-RAY
2004-12-07 VAL A:287 A:287 14.0 0.09 -66.6 163.9 14.0 0.09 0.0 HOH
3.565
N
O
2qmk 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:287 A:287 12.0 0.077 -68.0 171.6 12.0 0.077 0.0 HOH
3.713
N
O
2qv4 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:287 A:287 13.0 0.084 -67.6 166.2 13.0 0.084 0.0 HOH
3.638
N
O
3bai 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:287 A:287 12.0 0.077 -68.7 163.1 12.0 0.077 0.0 HOH
3.626
CG1
O
3baj 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:287 A:287 11.0 0.071 -71.1 165.3 11.0 0.071 0.0 HOH
3.685
N
O
3baw 1 P04746 98.59 0.0 X-RAY
2008-03-25 VAL A:287 A:287 11.0 0.071 -69.5 166.6 11.0 0.071 0.0 HOH
3.646
CG1
O
3ij7 1 P04746 98.59 0.0 X-RAY
2009-10-27 VAL A:287 A:287 12.0 0.077 -67.7 164.5 12.0 0.077 0.0 HOH
3.574
CG1
O
3ij8 1 P04746 98.59 0.0 X-RAY
2009-10-27 VAL A:287 A:287 10.0 0.065 -67.9 163.4 10.0 0.065 0.0 HOH
3.585
N
O
3ij9 1 P04746 98.59 0.0 X-RAY
2009-10-27 VAL A:287 A:287 11.0 0.071 -69.0 163.3 11.0 0.071 0.0 HOH
3.583
N
O
4gqq 1 P04746 98.59 0.0 X-RAY
2012-10-24 VAL A:287 A:287 12.0 0.077 -66.9 165.2 12.0 0.077 0.0 0XR
HOH
3.619
3.583
N
CG1
O3
O
4gqr 1 P04746 98.59 0.0 X-RAY
2012-10-24 VAL A:287 A:287 13.0 0.084 -66.8 165.4 13.0 0.084 0.0 HOH
3.569
N
O
4w93 1 P04746 98.59 0.0 X-RAY
2015-07-15 VAL A:287 A:287 13.0 0.084 -67.0 162.2 13.0 0.084 0.0 HOH
3.488
N
O
4x9y 1 P04746 98.59 0.0 X-RAY
2014-12-31 VAL A:287 A:287 13.0 0.084 -64.8 163.8 13.0 0.084 0.0 HOH
2.735
HG12
O
5e0f 1 P04746 98.59 0.0 X-RAY
2016-09-07 VAL A:287 A:287 14.0 0.09 -66.9 164.6 14.0 0.09 0.0 HOH
2.897
HG13
O
5emy 1 P04746 98.59 0.0 X-RAY
2016-07-06 VAL A:287 A:287 13.0 0.084 -64.7 163.7 13.0 0.084 0.0 HOH
2.741
HG12
O
5kez 1 P04746 98.59 0.0 X-RAY
2017-03-29 VAL A:287 A:287 14.0 0.09 -66.2 162.3 14.0 0.09 0.0 HOH
5.843
O
O
5u3a 1 P04746 98.59 0.0 X-RAY
2017-12-06 VAL A:287 A:287 14.0 0.09 -63.7 164.2 14.0 0.09 0.0 HOH
2.717
HG12
O
5va9 1 P04746 98.59 0.0 X-RAY
2018-03-28 VAL A:287 A:287 13.0 0.084 -64.5 162.0 13.0 0.084 0.0 HOH
4.996
O
O
VAL B:287 B:287 13.0 0.084 -65.2 163.3 NA NA NA
6obx 1 P04746 98.59 0.0 X-RAY
2020-02-12 VAL A:287 A:287 13.0 0.084 -64.4 163.2 13.0 0.084 0.0 HOH
2.740
HG12
O
6ocn 1 P04746 98.59 0.0 X-RAY
2020-02-12 VAL A:287 A:287 14.0 0.09 -63.3 164.7 14.0 0.09 0.0 HOH
2.745
HG12
O
1xgz 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:287 A:287 13.0 0.084 -68.5 163.0 13.0 0.084 0.0 HOH
3.693
N
O
1xh0 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:287 A:287 14.0 0.09 -67.9 162.0 14.0 0.09 0.0 HOH
3.653
CG1
O
1xh1 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:287 A:287 13.0 0.084 -69.4 164.3 13.0 0.084 0.0 HOH
3.688
CG1
O
1xh2 1 P04746 98.39 0.0 X-RAY
2005-05-24 VAL A:287 A:287 14.0 0.09 -70.5 163.4 14.0 0.09 0.0 HOH
3.735
CG1
O
3bak 1 P04746 98.39 0.0 X-RAY
2008-03-25 VAL A:287 A:287 11.0 0.071 -68.6 165.5 11.0 0.071 0.0 HOH
3.670
CG1
O
3bax 1 P04746 98.39 0.0 X-RAY
2008-03-25 VAL A:287 A:287 11.0 0.071 -68.3 166.1 11.0 0.071 0.0 HOH
3.685
CG1
O
3bay 1 P04746 98.39 0.0 X-RAY
2008-03-25 VAL A:287 A:287 11.0 0.071 -65.4 163.1 11.0 0.071 0.0 HOH
3.558
CG1
O
1kgw 1 P04746 98.39 0.0 X-RAY
2002-01-16 VAL A:287 A:287 12.0 0.077 -65.5 161.9 12.0 0.077 0.0 HOH
4.667
CG1
O
2cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 VAL A:287 A:287 11.0 0.071 -66.4 163.0 11.0 0.071 0.0 HOH
3.505
CG1
O
3cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 VAL A:287 A:287 16.0 0.103 -66.5 160.0 16.0 0.103 0.0 HOH
3.165
CG1
O
5td4 1 P04746 98.39 0.0 X-RAY
2016-11-02 VAL A:287 A:287 13.0 0.084 -64.2 164.6 13.0 0.084 0.0 HOH
3.538
CG1
O
1kgx 1 P04746 98.39 0.0 X-RAY
2002-01-16 VAL A:287 A:287 12.0 0.077 -67.4 163.3 12.0 0.077 0.0 HOH
2.908
CA
O
1kbb 1 P04746 98.39 0.0 X-RAY
2002-04-10 VAL A:287 A:287 13.0 0.084 -67.0 162.8 13.0 0.084 0.0 HOH
4.530
CA
O
1kgu 1 P04746 98.39 0.0 X-RAY
2002-01-16 VAL A:287 A:287 16.0 0.103 -64.4 163.2 16.0 0.103 0.0 HOH
4.263
CG1
O
1kb3 1 P04746 98.39 0.0 X-RAY
2002-05-01 VAL A:287 A:287 13.0 0.084 -65.6 163.1 13.0 0.084 0.0 HOH
3.372
CG1
O
1kbk 1 P04746 98.39 0.0 X-RAY
2002-04-10 VAL A:287 A:287 12.0 0.077 -66.5 163.6 12.0 0.077 0.0 HOH
3.622
N
O
1c8q 1 P04745 97.58 0.0 X-RAY
2001-06-13 MET A:287 A:287 18.0 0.097 -68.3 173.2 18.0 0.097 0.0 HOH
3.089
N
O
1mfv 1 P04745 97.58 0.0 X-RAY
2002-11-20 MET A:287 A:287 13.0 0.07 -65.5 170.6 13.0 0.07 0.0 AGL
HOH
9.686
3.333
N
N
C6
O
1smd 1 P04745 97.58 0.0 X-RAY
1996-07-11 MET A:287 A:287 9.0 0.049 -74.1 167.6 9.0 0.049 0.0 HOH
3.502
N
O
1xv8 1 P04745 97.58 0.0 X-RAY
2005-10-11 MET A:287 A:287 15.0 0.081 -51.6 145.0 15.0 0.081 0.0 HOH
5.255
N
O
MET B:287 B:287 14.0 0.076 -51.7 145.1 14.0 0.076 0.0 HOH
5.270
CB
O
1q4n 1 P04745 97.38 0.0 X-RAY
2004-03-16 MET A:287 X:287 15.0 0.081 -67.2 168.2 15.0 0.081 0.0 HOH
3.312
N
O
1z32 1 P04745 97.38 0.0 X-RAY
2005-05-31 MET A:287 X:287 15.0 0.081 -68.4 169.5 15.0 0.081 0.0 HOH
3.336
N
O
1jxj 1 P04745 97.38 0.0 X-RAY
2001-09-14 MET A:287 A:287 14.0 0.076 -70.2 168.5 14.0 0.076 0.0 HOH
3.347
N
O
1nm9 1 P04745 97.38 0.0 X-RAY
2004-01-20 MET A:287 A:287 15.0 0.081 -60.1 167.5 15.0 0.081 0.0 AGL
HOH
9.703
3.317
N
N
C6
O
3blk 1 P04745 97.38 0.0 X-RAY
2008-11-25 MET A:287 A:287 15.0 0.081 -71.1 171.9 15.0 0.081 0.0 HOH
3.684
N
O
3blp 1 P04745 97.38 0.0 X-RAY
2008-11-18 MET A:287 X:287 12.0 0.065 -67.8 169.3 12.0 0.065 0.0 HOH
3.493
N
O
1jxk 1 P04745 96.57 0.0 X-RAY
2001-09-14 MET A:287 A:287 15.0 0.081 -69.4 169.7 15.0 0.081 0.0 HOH
3.411
N
O
1mfu 1 P04745 96.57 0.0 X-RAY
2002-11-20 MET A:287 A:287 14.0 0.076 -63.1 167.8 14.0 0.076 0.0 AGL
HMC
HOH
9.874
9.901
3.355
N
N
N
C6
O2
O
3dhp 1 P04745 96.37 0.0 X-RAY
2008-07-01 MET A:287 A:287 17.0 0.092 -70.0 174.0 17.0 0.092 0.0 HOH
3.390
N
O
1kxq 1 P00690 87.1 0.0 X-RAY
2002-06-19 MET A:287 A:287 12.0 0.065 -67.4 168.9 12.0 0.065 0.0 HOH
3.405
N
O
MET B:287 B:287 11.0 0.059 -65.4 169.5 NA NA NA
MET C:287 C:287 12.0 0.065 -69.6 171.0 NA NA NA
MET D:287 D:287 12.0 0.065 -67.5 168.2 NA NA NA
1kxt 1 P00690 87.1 0.0 X-RAY
2002-06-19 MET A:287 A:287 11.0 0.059 -69.5 171.1 11.0 0.059 0.0 HOH
3.440
N
O
MET C:287 C:287 12.0 0.065 -73.5 176.1 NA NA NA
MET E:287 E:287 11.0 0.059 -67.9 168.0 NA NA NA
1kxv 1 P00690 87.1 0.0 X-RAY
2002-06-19 MET A:287 A:287 8.0 0.043 -65.6 167.4 4.0 0.022 0.021 C:None:0.022
HOH
3.428
CA
O
MET B:287 B:287 12.0 0.065 -69.3 164.5 NA NA NA
1dhk 1 P00690 87.1 0.0 X-RAY
1997-12-24 MET A:287 A:287 11.0 0.059 -72.1 168.6 11.0 0.059 0.0 HOH
3.219
CE
H2
1ppi 1 P00690 87.1 0.0 X-RAY
1995-05-24 MET A:287 A:287 13.0 0.07 -65.5 167.3 13.0 0.07 0.0 HOH
3.325
N
O
3l2l 1 P00690 86.9 0.0 X-RAY
2010-04-14 MET A:287 A:287 11.0 0.059 -62.9 168.4 11.0 0.059 0.0 HOH
3.053
H
O
3l2m 1 P00690 86.9 0.0 X-RAY
2010-04-14 MET A:287 A:287 11.0 0.059 -67.1 168.9 11.0 0.059 0.0 HOH
2.858
HB3
O
1ua3 1 P00690 86.9 0.0 X-RAY
2003-10-14 MET A:287 A:287 11.0 0.059 -60.9 165.1 11.0 0.059 0.0 GLC
HOH
9.842
3.355
N
N
C6
O
1vah 1 P00690 86.9 0.0 X-RAY
2005-04-26 MET A:287 A:287 14.0 0.076 -66.7 169.4 14.0 0.076 0.0 HOH
3.811
CE
O
1jfh 1 P00690 86.9 0.0 X-RAY
1998-12-02 MET A:287 A:287 12.0 0.065 -65.4 171.2 12.0 0.065 0.0 HOH
3.474
N
O
1ose 1 P00690 86.69 0.0 X-RAY
1997-04-01 MET A:287 A:287 10.0 0.054 -73.1 169.8 10.0 0.054 0.0 HOH
3.498
N
O
1hx0 1 P00690 86.69 0.0 X-RAY
2001-08-08 MET A:287 A:287 12.0 0.065 -67.2 166.6 12.0 0.065 0.0 GLC
HOH
9.607
3.467
N
N
O6
O
1wo2 1 P00690 86.69 0.0 X-RAY
2005-03-15 MET A:287 A:287 9.0 0.049 -69.5 166.9 9.0 0.049 0.0 GLC
HOH
9.770
3.377
N
CA
C6
O
1bvn 1 P00690 86.69 0.0 X-RAY
1998-09-23 MET A:287 P:287 11.0 0.059 -61.6 166.2 11.0 0.059 0.0 HOH
3.693
CE
O
1pif 1 P00690 86.49 0.0 X-RAY
1996-12-07 MET A:287 A:287 12.0 0.065 -69.7 169.1 12.0 0.065 0.0 HOH
3.577
N
O
1pig 1 P00690 86.49 0.0 X-RAY
1996-12-07 MET A:287 A:287 14.0 0.076 -67.5 170.5 14.0 0.076 0.0 BGC
HOH
9.946
3.326
N
N
C6
O
4x0n 1 P00690 86.49 0.0 X-RAY
2015-11-25 MET A:287 A:287 10.0 0.054 -67.4 166.9 10.0 0.054 0.0 HOH
3.426
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19961-f1 1 P19961 100.0 0.0 MET A:302 A:302 10.0 0.054 -66.5 168.3
af-p04746-f1 1 P04746 98.83 0.0 VAL A:302 A:302 14.0 0.09 -62.8 163.9
af-p0dte7-f1 1 P0DTE7 97.46 0.0 MET A:302 A:302 10.0 0.054 -66.6 168.1
af-p0dte8-f1 1 P0DTE8 97.46 0.0 MET A:302 A:302 10.0 0.054 -65.8 167.4
af-p0dub6-f1 1 P0DUB6 97.46 0.0 MET A:302 A:302 9.0 0.049 -66.6 167.6