Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104117921 . G A CCDS782.1:NM_020978.4:c.955Gga>Aga_NP_066188.1:p.319G>R Homo sapiens amylase, alpha 2B (pancreatic) (AMY2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3old 1 P04746 98.99 0.0 X-RAY
2011-04-13 GLY A:304 A:304 71.0 0.947 T 79.1 5.2 71.0 0.947 0.0 GLC
GLC
GLC
G6D
ACI
MPD
HOH
7.528
6.796
7.330
7.528
9.631
4.212
3.709
C
O
O
O
C
O
CA
O2
O6
C6
C6
O3
C5
O
3ole 1 P04746 98.99 0.0 X-RAY
2011-04-13 GLY A:304 A:304 70.0 0.933 T 81.1 3.1 70.0 0.933 0.0 GLC
GLC
GLC
G6D
ACI
MPD
HOH
7.543
6.751
7.392
7.667
9.733
4.180
3.409
C
O
O
O
C
O
CA
O2
O6
C6
C6
O3
C5
O
3olg 1 P04746 98.99 0.0 X-RAY
2011-04-13 GLY A:304 A:304 68.0 0.907 T 80.0 3.8 68.0 0.907 0.0 GLC
G6D
BGC
GLC
G6D
HSD
HOH
7.490
9.989
6.899
7.272
7.785
9.756
2.880
C
O
O
O
O
C
O
O2
O2
O6
C6
C6
C6
O
3oli 1 P04746 98.99 0.0 X-RAY
2011-04-13 GLY A:304 A:304 57.0 0.76 T 77.1 3.2 57.0 0.76 0.0 GLC
GLC
GLC
G6D
HSD
HOH
7.571
6.687
7.374
7.677
9.733
2.857
C
O
O
O
C
O
O2
O6
C6
C6
O3
O
6z8l 1 P04746 98.79 0.0 X-RAY
2020-12-02 GLY A:304 A:304 56.0 0.747 T 79.3 5.8 56.0 0.747 0.0 GLC
GLC
GLC
HOH
7.192
6.992
6.461
2.626
C
O
O
O
O2
H62
O6
O
1b2y 1 P04746 98.79 0.0 X-RAY
2000-02-16 GLY A:304 A:304 68.0 0.907 T 108.3 -11.9 68.0 0.907 0.0 BGC
AC1
GLC
HOH
6.156
7.795
7.545
2.761
O
O
C
O
O6
C6
O2
O
1bsi 1 P04746 98.59 0.0 X-RAY
1999-05-18 GLY A:304 A:304 58.0 0.773 T 66.0 7.6 58.0 0.773 0.0 HOH
3.036
CA
O
1cpu 1 P04746 98.59 0.0 X-RAY
1999-06-14 GLY A:304 A:304 69.0 0.92 T 65.5 23.5 69.0 0.92 0.0 GLC
AGL
GLC
GLC
HMC
HOH
7.604
7.699
7.526
9.936
9.652
3.426
O
O
C
O
C
CA
C6
C6
O2
O2
O3
O
1hny 1 P04746 98.59 0.0 X-RAY
1996-03-08 GLY A:304 A:304 51.0 0.68 T 83.9 -3.4 51.0 0.68 0.0 HOH
3.216
C
O
1u2y 1 P04746 98.59 0.0 X-RAY
2004-09-07 GLY A:304 A:304 67.0 0.893 T 64.8 26.5 67.0 0.893 0.0 GOX
HOH
7.917
3.353
O
CA
O6
O
1u30 1 P04746 98.59 0.0 X-RAY
2004-09-07 GLY A:304 A:304 65.0 0.867 T 69.4 30.5 65.0 0.867 0.0 LAG
GOX
HOH
7.311
8.832
3.346
C
O
CA
OB2
O3
O
1u33 1 P04746 98.59 0.0 X-RAY
2004-09-07 GLY A:304 A:304 68.0 0.907 T 62.5 26.7 68.0 0.907 0.0 LM2
HOH
7.186
3.389
C
CA
OB2
O
1xcw 1 P04746 98.59 0.0 X-RAY
2004-12-07 GLY A:304 A:304 65.0 0.867 T 62.8 29.6 65.0 0.867 0.0 GLC
AC1
HOH
6.331
8.293
3.385
O
C
CA
O6
C6
O
1xcx 1 P04746 98.59 0.0 X-RAY
2004-12-07 GLY A:304 A:304 65.0 0.867 T 59.4 39.2 65.0 0.867 0.0 BGC
GLC
AC1
HOH
9.114
7.734
8.068
3.350
O
O
C
CA
C6
C6
C6
O
1xd0 1 P04746 98.59 0.0 X-RAY
2004-12-07 GLY A:304 A:304 74.0 0.987 T 81.0 -1.7 74.0 0.987 0.0 ARE
HOH
7.312
4.096
O
O
C6G
O
1xd1 1 P04746 98.59 0.0 X-RAY
2004-12-07 GLY A:304 A:304 71.0 0.947 T 43.2 49.4 71.0 0.947 0.0 6SA
HOH
5.410
4.130
O
N
OW1
O
2qmk 1 P04746 98.59 0.0 X-RAY
2008-03-25 GLY A:304 A:304 58.0 0.773 T 84.9 15.5 58.0 0.773 0.0 HOH
4.476
N
O
2qv4 1 P04746 98.59 0.0 X-RAY
2008-03-25 GLY A:304 A:304 56.0 0.747 T 77.4 16.9 56.0 0.747 0.0 QV4
HOH
8.067
3.053
C
CA
O2B
O
3bai 1 P04746 98.59 0.0 X-RAY
2008-03-25 GLY A:304 A:304 58.0 0.773 T 63.3 10.9 58.0 0.773 0.0 HOH
3.160
CA
O
3baj 1 P04746 98.59 0.0 X-RAY
2008-03-25 GLY A:304 A:304 61.0 0.813 T 63.5 28.3 61.0 0.813 0.0 ARE
HOH
7.698
2.725
C
O
O2B
O
3baw 1 P04746 98.59 0.0 X-RAY
2008-03-25 GLY A:304 A:304 59.0 0.787 T 61.8 -10.0 59.0 0.787 0.0 HOH
2.469
O
O
3ij7 1 P04746 98.59 0.0 X-RAY
2009-10-27 GLY A:304 A:304 66.0 0.88 T 62.3 21.0 66.0 0.88 0.0 B9D
BGC
HOH
9.200
7.434
3.563
C
C
CA
O3
O2
O
3ij8 1 P04746 98.59 0.0 X-RAY
2009-10-27 GLY A:304 A:304 65.0 0.867 T 58.6 31.2 65.0 0.867 0.0 B0D
B9D
HOH
6.987
9.576
2.780
C
C
O
O6
O3
O
3ij9 1 P04746 98.59 0.0 X-RAY
2009-10-27 GLY A:304 A:304 65.0 0.867 T 57.2 27.6 65.0 0.867 0.0 B9D
BGC
HOH
9.360
7.422
3.537
C
C
CA
O3
O2
O
4gqq 1 P04746 98.59 0.0 X-RAY
2012-10-24 GLY A:304 A:304 67.0 0.893 S -70.4 -14.8 67.0 0.893 0.0 HOH
8.695
C
O
4gqr 1 P04746 98.59 0.0 X-RAY
2012-10-24 GLY A:304 A:304 30.0 0.4 S 92.6 -23.6 30.0 0.4 0.0 HOH
3.261
C
O
4w93 1 P04746 98.59 0.0 X-RAY
2015-07-15 GLY A:304 A:304 37.0 0.493 T 88.0 -7.1 37.0 0.493 0.0 3L9
HOH
9.421
3.225
C
C
C6C
O
4x9y 1 P04746 98.59 0.0 X-RAY
2014-12-31 GLY A:304 A:304 27.0 0.36 S 98.5 -8.4 27.0 0.36 0.0 HOH
2.778
HA2
O
5e0f 1 P04746 98.59 0.0 X-RAY
2016-09-07 GLY A:304 A:304 46.0 0.613 S 92.6 -15.1 46.0 0.613 0.0 5J7
HOH
7.467
2.711
C
HA2
H321
O
5emy 1 P04746 98.59 0.0 X-RAY
2016-07-06 GLY A:304 A:304 56.0 0.747 T 79.5 4.8 56.0 0.747 0.0 5QP
HOH
7.164
2.733
C
HA2
HO2
O
5kez 1 P04746 98.59 0.0 X-RAY
2017-03-29 GLY A:304 A:304 16.0 0.213 S 80.5 -0.8 16.0 0.213 0.0 HOH
2.697
O
O
5u3a 1 P04746 98.59 0.0 X-RAY
2017-12-06 GLY A:304 A:304 26.0 0.347 T 97.6 -10.1 26.0 0.347 0.0 HOH
2.783
O
O
5va9 1 P04746 98.59 0.0 X-RAY
2018-03-28 GLY A:304 A:304 26.0 0.347 S 104.5 -16.0 26.0 0.347 0.0 HOH
3.132
C
O
GLY B:304 B:304 17.0 0.227 S 103.4 -16.5 NA NA NA
6obx 1 P04746 98.59 0.0 X-RAY
2020-02-12 GLY A:304 A:304 30.0 0.4 S 97.2 -10.0 30.0 0.4 0.0 ZXU
HOH
9.349
2.870
H
HA2
H43
O
6ocn 1 P04746 98.59 0.0 X-RAY
2020-02-12 GLY A:304 A:304 31.0 0.413 S 99.0 -10.5 31.0 0.413 0.0 ZXY
HOH
9.274
2.872
H
HA2
H29
O
1xgz 1 P04746 98.39 0.0 X-RAY
2005-05-24 GLY A:304 A:304 53.0 0.707 S 69.1 3.8 53.0 0.707 0.0 HOH
3.170
CA
O
1xh0 1 P04746 98.39 0.0 X-RAY
2005-05-24 GLY A:304 A:304 60.0 0.8 T 69.1 14.1 60.0 0.8 0.0 AAO
HOH
5.522
3.401
O
O
O6T
O
1xh1 1 P04746 98.39 0.0 X-RAY
2005-05-24 GLY A:304 A:304 58.0 0.773 T 68.5 15.0 58.0 0.773 0.0 HOH
3.102
CA
O
1xh2 1 P04746 98.39 0.0 X-RAY
2005-05-24 GLY A:304 A:304 58.0 0.773 T 70.0 17.9 58.0 0.773 0.0 ARE
HOH
7.648
3.113
C
CA
O2B
O
3bak 1 P04746 98.39 0.0 X-RAY
2008-03-25 GLY A:304 A:304 58.0 0.773 T 68.8 11.9 58.0 0.773 0.0 HOH
3.220
CA
O
3bax 1 P04746 98.39 0.0 X-RAY
2008-03-25 GLY A:304 A:304 65.0 0.867 T 60.6 24.3 65.0 0.867 0.0 HOH
2.719
O
O
3bay 1 P04746 98.39 0.0 X-RAY
2008-03-25 GLY A:304 A:304 52.0 0.693 T 55.8 44.1 52.0 0.693 0.0 ARE
HOH
7.586
4.834
C
N
O2B
O
1kgw 1 P04746 98.39 0.0 X-RAY
2002-01-16 GLY A:304 A:304 64.0 0.853 T 75.7 -0.7 64.0 0.853 0.0 HOH
4.793
N
O
2cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 GLY A:304 A:304 59.0 0.787 S 75.7 10.3 59.0 0.787 0.0 HOH
3.241
N
O
3cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 GLY A:304 A:304 64.0 0.853 S 66.5 8.0 64.0 0.853 0.0 GLC
HOH
7.482
3.014
C
N
O2
O
5td4 1 P04746 98.39 0.0 X-RAY
2016-11-02 GLY A:304 A:304 71.0 0.947 T 79.2 -0.9 71.0 0.947 0.0 GLC
GLC
GLC
GLC
HOH
6.877
7.665
9.762
7.351
3.831
O
O
C
C
CA
O6
O6
O4
O2
O
1kgx 1 P04746 98.39 0.0 X-RAY
2002-01-16 GLY A:304 A:304 59.0 0.787 T 61.8 18.9 59.0 0.787 0.0 HOH
4.084
CA
O
1kbb 1 P04746 98.39 0.0 X-RAY
2002-04-10 GLY A:304 A:304 62.0 0.827 T 83.7 -14.0 62.0 0.827 0.0 HOH
4.160
N
O
1kgu 1 P04746 98.39 0.0 X-RAY
2002-01-16 GLY A:304 A:304 53.0 0.707 T 90.9 11.1 53.0 0.707 0.0 HOH
4.519
N
O
1kb3 1 P04746 98.39 0.0 X-RAY
2002-05-01 GLY A:304 A:304 61.0 0.813 T 63.7 24.8 61.0 0.813 0.0 HOH
3.650
CA
O
1kbk 1 P04746 98.39 0.0 X-RAY
2002-04-10 GLY A:304 A:304 59.0 0.787 T 63.9 -3.3 59.0 0.787 0.0 HOH
3.324
CA
O
1c8q 1 P04745 97.58 0.0 X-RAY
2001-06-13 GLY A:304 A:304 50.0 0.667 T 83.2 6.3 50.0 0.667 0.0 HOH
3.426
O
O
1mfv 1 P04745 97.58 0.0 X-RAY
2002-11-20 GLY A:304 A:304 48.0 0.64 T 76.8 7.3 48.0 0.64 0.0 GLC
GLC
AGL
HMC
HOH
7.589
7.273
7.670
9.682
3.538
C
O
O
C
CA
O2
C6
C6
O3
O
1smd 1 P04745 97.58 0.0 X-RAY
1996-07-11 GLY A:304 A:304 51.0 0.68 T 67.6 32.4 51.0 0.68 0.0 HOH
2.849
CA
O
1xv8 1 P04745 97.58 0.0 X-RAY
2005-10-11 GLY A:304 A:304 19.0 0.253 T 99.4 -61.2 19.0 0.253 0.0 HOH
6.650
O
O
GLY B:304 B:304 18.0 0.24 T 99.4 -61.2 18.0 0.24 0.0 HOH
6.698
O
O
1q4n 1 P04745 97.38 0.0 X-RAY
2004-03-16 GLY A:304 X:304 61.0 0.813 T 70.0 -1.2 61.0 0.813 0.0 TAM
HOH
7.832
3.507
C
CA
O5
O
1z32 1 P04745 97.38 0.0 X-RAY
2005-05-31 GLY A:304 X:304 51.0 0.68 T 78.1 9.6 51.0 0.68 0.0 GLC
AGL
HMC
HOH
7.394
7.770
9.977
2.863
C
O
C
O
O2
C6
O3
O
1jxj 1 P04745 97.38 0.0 X-RAY
2001-09-14 GLY A:304 A:304 29.0 0.387 T 95.5 -0.8 29.0 0.387 0.0 HOH
2.864
C
O
1nm9 1 P04745 97.38 0.0 X-RAY
2004-01-20 GLY A:304 A:304 55.0 0.733 T 79.3 -2.3 55.0 0.733 0.0 GLC
AGL
HOH
7.267
7.955
3.490
O
C
CA
C6
C6
O
3blk 1 P04745 97.38 0.0 X-RAY
2008-11-25 GLY A:304 A:304 56.0 0.747 T 72.5 13.2 56.0 0.747 0.0 GLC
GLC
AGL
HMC
HOH
7.609
7.510
7.706
9.723
3.718
C
O
O
C
CA
O2
C6
C6
O3
O
3blp 1 P04745 97.38 0.0 X-RAY
2008-11-18 GLY A:304 X:304 54.0 0.72 T 82.5 6.9 54.0 0.72 0.0 GLC
GLC
AGL
HMC
HOH
7.584
7.371
7.734
9.674
3.524
C
O
O
C
C
O2
C6
C6
O3
O
1jxk 1 P04745 96.57 0.0 X-RAY
2001-09-14 GLY A:304 A:304 45.0 0.6 S -114.5 -173.2 45.0 0.6 0.0 HOH
2.959
O
O
1mfu 1 P04745 96.57 0.0 X-RAY
2002-11-20 GLY A:304 A:304 40.0 0.533 S -114.5 -161.8 40.0 0.533 0.0 GLC
GLC
HOH
9.928
7.972
2.839
N
CA
O
O2
O6
O
3dhp 1 P04745 96.37 0.0 X-RAY
2008-07-01 GLY A:304 A:304 55.0 0.733 T 82.4 2.5 55.0 0.733 0.0 GLC
AGL
GLC
HMC
HOH
7.574
7.859
7.640
9.777
3.520
O
O
C
C
N
C6
C6
O2
O3
O
1kxq 1 P00690 87.1 0.0 X-RAY
2002-06-19 GLY A:304 A:304 33.0 0.44 S 104.2 -16.4 33.0 0.44 0.0 HOH
2.737
O
O
GLY B:304 B:304 33.0 0.44 S 101.7 -15.6 NA NA NA
GLY C:304 C:304 25.0 0.333 S 96.5 -15.1 NA NA NA
GLY D:304 D:304 33.0 0.44 S 92.5 -12.4 NA NA NA
1kxt 1 P00690 87.1 0.0 X-RAY
2002-06-19 GLY A:304 A:304 25.0 0.333 S 94.9 -93.8 25.0 0.333 0.0 HOH
4.272
CA
O
GLY C:304 C:304 31.0 0.413 S 96.7 -27.5 NA NA NA
GLY E:304 E:304 38.0 0.507 S 91.2 -119.8 NA NA NA
1kxv 1 P00690 87.1 0.0 X-RAY
2002-06-19 GLY A:304 A:304 35.0 0.467 S 91.4 -12.2 35.0 0.467 0.0 HOH
2.953
O
O
GLY B:304 B:304 25.0 0.333 S 88.3 -10.7 NA NA NA
1dhk 1 P00690 87.1 0.0 X-RAY
1997-12-24 GLY A:304 A:304 45.0 0.6 S 76.4 13.6 7.0 0.093 0.507 B:P02873:0.507
CA
HOH
6.716
1.807
O
O
CA
H2
1ppi 1 P00690 87.1 0.0 X-RAY
1995-05-24 GLY A:304 A:304 64.0 0.853 T 76.6 13.1 64.0 0.853 0.0 GLC
GLC
BGC
DAF
HOH
7.663
9.961
7.402
7.600
2.971
C
O
O
C
O
O2
O2
C6
C6
O
3l2l 1 P00690 86.9 0.0 X-RAY
2010-04-14 GLY A:304 A:304 36.0 0.48 S 94.7 -9.6 36.0 0.48 0.0 GLC
HOH
9.909
2.622
H
O
O2
O
3l2m 1 P00690 86.9 0.0 X-RAY
2010-04-14 GLY A:304 A:304 37.0 0.493 S 93.0 -2.6 37.0 0.493 0.0 GLC
GLC
HOH
8.263
8.238
2.706
C
H
O
HO3
O2
O
1ua3 1 P00690 86.9 0.0 X-RAY
2003-10-14 GLY A:304 A:304 28.0 0.373 S 109.5 2.2 28.0 0.373 0.0 GLC
HOH
9.919
2.891
N
C
O2
O
1vah 1 P00690 86.9 0.0 X-RAY
2005-04-26 GLY A:304 A:304 22.0 0.293 S 177.4 -142.2 22.0 0.293 0.0 NPO
HOH
9.561
2.762
CA
O
O3
O
1jfh 1 P00690 86.9 0.0 X-RAY
1998-12-02 GLY A:304 A:304 56.0 0.747 T 77.5 7.2 56.0 0.747 0.0 MA3
MA1
GLC
HOH
7.349
7.412
7.611
3.587
C
O
O
O
O2
C6
O6
O
1ose 1 P00690 86.69 0.0 X-RAY
1997-04-01 GLY A:304 A:304 74.0 0.987 T 81.0 -14.5 74.0 0.987 0.0 BGC
AC1
GLC
HOH
5.716
7.776
7.637
3.098
O
O
C
CA
O6
C6
O2
O
1hx0 1 P00690 86.69 0.0 X-RAY
2001-08-08 GLY A:304 A:304 63.0 0.84 T 82.5 5.8 63.0 0.84 0.0 GLC
BGC
AC1
GLC
EDO
HOH
7.076
6.381
7.754
7.609
4.144
2.455
O
O
C
C
N
O
C6
O6
C6
O2
C2
O
1wo2 1 P00690 86.69 0.0 X-RAY
2005-03-15 GLY A:304 A:304 28.0 0.373 S 92.4 -25.9 28.0 0.373 0.0 HOH
2.698
O
O
1bvn 1 P00690 86.69 0.0 X-RAY
1998-09-23 GLY A:304 P:304 18.0 0.24 T 94.5 -69.3 17.0 0.227 0.013 B:P01092:0.013
HOH
3.087
O
O
1pif 1 P00690 86.49 0.0 X-RAY
1996-12-07 GLY A:304 A:304 37.0 0.493 S 89.0 -35.3 37.0 0.493 0.0 HOH
3.138
O
O
1pig 1 P00690 86.49 0.0 X-RAY
1996-12-07 GLY A:304 A:304 59.0 0.787 T 90.2 -16.6 59.0 0.787 0.0 GLC
BGC
GLC
AGL
HMC
HOH
7.802
6.961
6.976
7.670
9.738
3.266
C
O
O
C
C
O
O2
C6
C6
C6
O3
O
4x0n 1 P00690 86.49 0.0 X-RAY
2015-11-25 GLY A:304 A:304 23.0 0.307 T 78.7 4.8 23.0 0.307 0.0 GOL
HOH
4.030
2.943
N
O
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19961-f1 1 P19961 100.0 0.0 GLY A:319 A:319 41.0 0.547 T 92.0 -11.9
af-p04746-f1 1 P04746 98.83 0.0 GLY A:319 A:319 55.0 0.733 T 82.9 4.4
af-p0dte7-f1 1 P0DTE7 97.46 0.0 GLY A:319 A:319 50.0 0.667 T 80.2 -0.9
af-p0dte8-f1 1 P0DTE8 97.46 0.0 GLY A:319 A:319 48.0 0.64 T 73.6 1.9
af-p0dub6-f1 1 P0DUB6 97.46 0.0 GLY A:319 A:319 48.0 0.64 T 79.1 4.3