Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104122045 . G A CCDS782.1:NM_020978.4:c.1459Gat>Aat_NP_066188.1:p.487D>N Homo sapiens amylase, alpha 2B (pancreatic) (AMY2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3old 1 P04746 98.99 0.0 X-RAY
2011-04-13 ASP A:472 A:472 81.0 0.54 T -91.7 -0.4 81.0 0.54 0.0 HOH
3.127
O
O
3ole 1 P04746 98.99 0.0 X-RAY
2011-04-13 ASP A:472 A:472 87.0 0.58 T -90.5 2.0 87.0 0.58 0.0 HOH
3.002
OD2
O
3olg 1 P04746 98.99 0.0 X-RAY
2011-04-13 ASP A:472 A:472 93.0 0.62 T -99.1 15.3 93.0 0.62 0.0 HOH
5.235
OD1
O
3oli 1 P04746 98.99 0.0 X-RAY
2011-04-13 ASP A:472 A:472 92.0 0.613 T -89.5 9.2 92.0 0.613 0.0 HOH
4.675
OD1
O
6z8l 1 P04746 98.79 0.0 X-RAY
2020-12-02 ASP A:472 A:472 94.0 0.627 T -87.3 3.0 94.0 0.627 0.0 HOH
2.497
OD2
O
1b2y 1 P04746 98.79 0.0 X-RAY
2000-02-16 ASP A:472 A:472 96.0 0.64 T -95.9 16.8 96.0 0.64 0.0 HOH
5.880
N
O
1bsi 1 P04746 98.59 0.0 X-RAY
1999-05-18 ASP A:472 A:472 90.0 0.6 T -92.4 17.1 90.0 0.6 0.0 HOH
5.515
N
O
1cpu 1 P04746 98.59 0.0 X-RAY
1999-06-14 ASP A:472 A:472 81.0 0.54 T -92.4 9.4 81.0 0.54 0.0 HOH
5.977
OD1
O
1hny 1 P04746 98.59 0.0 X-RAY
1996-03-08 ASP A:472 A:472 92.0 0.613 T -97.3 16.7 92.0 0.613 0.0 HOH
3.307
OD1
O
1u2y 1 P04746 98.59 0.0 X-RAY
2004-09-07 ASP A:472 A:472 97.0 0.647 T -86.3 3.3 97.0 0.647 0.0 HOH
4.236
C
O
1u30 1 P04746 98.59 0.0 X-RAY
2004-09-07 ASP A:472 A:472 88.0 0.587 T -92.8 13.3 88.0 0.587 0.0 HOH
7.277
C
O
1u33 1 P04746 98.59 0.0 X-RAY
2004-09-07 ASP A:472 A:472 96.0 0.64 T -117.6 34.8 96.0 0.64 0.0 HOH
4.688
C
O
1xcw 1 P04746 98.59 0.0 X-RAY
2004-12-07 ASP A:472 A:472 89.0 0.593 T -85.4 7.9 89.0 0.593 0.0 HOH
8.814
OD1
O
1xcx 1 P04746 98.59 0.0 X-RAY
2004-12-07 ASP A:472 A:472 83.0 0.553 T -93.1 12.9 83.0 0.553 0.0 HOH
8.998
OD1
O
1xd0 1 P04746 98.59 0.0 X-RAY
2004-12-07 ASP A:472 A:472 87.0 0.58 T -90.1 5.4 87.0 0.58 0.0 HOH
8.918
OD1
O
1xd1 1 P04746 98.59 0.0 X-RAY
2004-12-07 ASP A:472 A:472 95.0 0.633 T -93.5 11.9 95.0 0.633 0.0 HOH
8.602
OD1
O
2qmk 1 P04746 98.59 0.0 X-RAY
2008-03-25 ASP A:472 A:472 100.0 0.667 T -98.6 18.8 100.0 0.667 0.0 HOH
2.814
OD2
O
2qv4 1 P04746 98.59 0.0 X-RAY
2008-03-25 ASP A:472 A:472 97.0 0.647 T -99.6 10.1 97.0 0.647 0.0 HOH
2.744
OD1
O
3bai 1 P04746 98.59 0.0 X-RAY
2008-03-25 ASP A:472 A:472 88.0 0.587 T -80.1 2.5 88.0 0.587 0.0 HOH
4.889
O
O
3baj 1 P04746 98.59 0.0 X-RAY
2008-03-25 ASP A:472 A:472 91.0 0.607 T -89.3 17.3 91.0 0.607 0.0 HOH
4.857
O
O
3baw 1 P04746 98.59 0.0 X-RAY
2008-03-25 ASP A:472 A:472 90.0 0.6 T -93.0 8.3 90.0 0.6 0.0 HOH
3.092
OD2
O
3ij7 1 P04746 98.59 0.0 X-RAY
2009-10-27 ASP A:472 A:472 86.0 0.573 T -92.9 8.0 86.0 0.573 0.0 HOH
6.251
N
O
3ij8 1 P04746 98.59 0.0 X-RAY
2009-10-27 ASP A:472 A:472 91.0 0.607 T -92.0 9.3 91.0 0.607 0.0 HOH
2.787
O
O
3ij9 1 P04746 98.59 0.0 X-RAY
2009-10-27 ASP A:472 A:472 92.0 0.613 T -91.5 7.1 92.0 0.613 0.0 HOH
4.976
OD2
O
4gqq 1 P04746 98.59 0.0 X-RAY
2012-10-24 ASP A:472 A:472 88.0 0.587 T -93.9 25.9 88.0 0.587 0.0 HOH
4.872
N
O
4gqr 1 P04746 98.59 0.0 X-RAY
2012-10-24 ASP A:472 A:472 82.0 0.547 T -84.7 -1.1 82.0 0.547 0.0 HOH
2.732
OD2
O
4w93 1 P04746 98.59 0.0 X-RAY
2015-07-15 ASP A:472 A:472 85.0 0.567 T -95.1 4.1 85.0 0.567 0.0 HOH
4.511
C
O
4x9y 1 P04746 98.59 0.0 X-RAY
2014-12-31 ASP A:472 A:472 84.0 0.56 T -85.5 0.1 84.0 0.56 0.0 HOH
2.634
OD2
O
5e0f 1 P04746 98.59 0.0 X-RAY
2016-09-07 ASP A:472 A:472 88.0 0.587 T -93.0 3.8 88.0 0.587 0.0 HOH
2.657
OD2
O
5emy 1 P04746 98.59 0.0 X-RAY
2016-07-06 ASP A:472 A:472 88.0 0.587 T -86.4 2.5 88.0 0.587 0.0 HOH
2.759
OD2
O
5kez 1 P04746 98.59 0.0 X-RAY
2017-03-29 ASP A:472 A:472 85.0 0.567 T -82.3 2.6 85.0 0.567 0.0 HOH
3.693
OD2
O
5u3a 1 P04746 98.59 0.0 X-RAY
2017-12-06 ASP A:472 A:472 92.0 0.613 T -82.7 0.7 92.0 0.613 0.0 HOH
2.562
OD2
O
5va9 1 P04746 98.59 0.0 X-RAY
2018-03-28 ASP A:472 A:472 89.0 0.593 T -78.7 3.2 89.0 0.593 0.0 HOH
4.369
C
O
ASP B:472 B:472 86.0 0.573 T -77.7 3.0 NA NA NA
6obx 1 P04746 98.59 0.0 X-RAY
2020-02-12 ASP A:472 A:472 91.0 0.607 T -84.2 -0.3 91.0 0.607 0.0 HOH
2.753
OD2
O
6ocn 1 P04746 98.59 0.0 X-RAY
2020-02-12 ASP A:472 A:472 91.0 0.607 T -84.9 -0.1 91.0 0.607 0.0 HOH
2.639
OD2
O
1xgz 1 P04746 98.39 0.0 X-RAY
2005-05-24 ASP A:472 A:472 89.0 0.593 T -90.3 7.0 89.0 0.593 0.0 HOH
4.511
N
O
1xh0 1 P04746 98.39 0.0 X-RAY
2005-05-24 ASP A:472 A:472 105.0 0.7 T -68.9 -28.2 105.0 0.7 0.0 HOH
4.763
O
O
1xh1 1 P04746 98.39 0.0 X-RAY
2005-05-24 ASP A:472 A:472 88.0 0.587 T -85.6 15.7 88.0 0.587 0.0 HOH
2.604
OD2
O
1xh2 1 P04746 98.39 0.0 X-RAY
2005-05-24 ASP A:472 A:472 87.0 0.58 T -82.8 12.9 87.0 0.58 0.0 HOH
2.848
OD2
O
3bak 1 P04746 98.39 0.0 X-RAY
2008-03-25 ASP A:472 A:472 90.0 0.6 T -88.6 13.5 90.0 0.6 0.0 HOH
4.497
C
O
3bax 1 P04746 98.39 0.0 X-RAY
2008-03-25 ASP A:472 A:472 89.0 0.593 T -93.5 5.2 89.0 0.593 0.0 HOH
2.735
OD2
O
3bay 1 P04746 98.39 0.0 X-RAY
2008-03-25 ASP A:472 A:472 91.0 0.607 T -87.6 16.9 91.0 0.607 0.0 HOH
4.436
O
O
1kgw 1 P04746 98.39 0.0 X-RAY
2002-01-16 ASP A:472 A:472 77.0 0.513 T -102.9 28.5 77.0 0.513 0.0 HOH
6.376
OD2
O
2cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 ASP A:472 A:472 85.0 0.567 T -90.1 6.5 85.0 0.567 0.0 HOH
8.772
OD2
O
3cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 ASP A:472 A:472 90.0 0.6 T -86.3 6.8 90.0 0.6 0.0 HOH
8.453
OD1
O
5td4 1 P04746 98.39 0.0 X-RAY
2016-11-02 ASP A:472 A:472 76.0 0.507 T -96.1 12.0 76.0 0.507 0.0 HOH
5.431
OD1
O
1kgx 1 P04746 98.39 0.0 X-RAY
2002-01-16 ASP A:472 A:472 95.0 0.633 T -85.2 11.4 95.0 0.633 0.0 HOH
4.265
C
O
1kbb 1 P04746 98.39 0.0 X-RAY
2002-04-10 ASP A:472 A:472 91.0 0.607 T -99.6 18.5 91.0 0.607 0.0 HOH
8.569
OD1
O
1kgu 1 P04746 98.39 0.0 X-RAY
2002-01-16 ASP A:472 A:472 89.0 0.593 T -91.6 22.5 89.0 0.593 0.0 HOH
7.780
C
O
1kb3 1 P04746 98.39 0.0 X-RAY
2002-05-01 ASP A:472 A:472 90.0 0.6 T -89.2 11.8 90.0 0.6 0.0 HOH
4.459
C
O
1kbk 1 P04746 98.39 0.0 X-RAY
2002-04-10 ASP A:472 A:472 85.0 0.567 T -86.8 6.2 85.0 0.567 0.0 HOH
8.891
OD1
O
1c8q 1 P04745 97.58 0.0 X-RAY
2001-06-13 ASP A:472 A:472 83.0 0.553 T -89.3 9.3 83.0 0.553 0.0 HOH
8.518
O
O
1mfv 1 P04745 97.58 0.0 X-RAY
2002-11-20 ASP A:472 A:472 88.0 0.587 T -92.8 8.7 88.0 0.587 0.0 HOH
6.074
N
O
1smd 1 P04745 97.58 0.0 X-RAY
1996-07-11 ASP A:472 A:472 74.0 0.493 T -93.2 10.6 74.0 0.493 0.0 HOH
8.519
N
O
1xv8 1 P04745 97.58 0.0 X-RAY
2005-10-11 ASP A:472 A:472 85.0 0.567 T -65.3 -3.3 85.0 0.567 0.0 HOH
4.263
C
O
ASP B:472 B:472 85.0 0.567 T -65.3 -3.3 85.0 0.567 0.0 HOH
4.263
C
O
1q4n 1 P04745 97.38 0.0 X-RAY
2004-03-16 ASP A:472 X:472 92.0 0.613 T -92.2 9.0 92.0 0.613 0.0 HOH
4.538
C
O
1z32 1 P04745 97.38 0.0 X-RAY
2005-05-31 ASP A:472 X:472 84.0 0.56 T -97.1 9.0 84.0 0.56 0.0 HOH
5.123
OD1
O
1jxj 1 P04745 97.38 0.0 X-RAY
2001-09-14 ASP A:472 A:472 85.0 0.567 T -93.0 6.7 85.0 0.567 0.0 HOH
4.647
OD1
O
1nm9 1 P04745 97.38 0.0 X-RAY
2004-01-20 ASP A:472 A:472 91.0 0.607 T -93.4 11.2 91.0 0.607 0.0 HOH
4.837
O
O
3blk 1 P04745 97.38 0.0 X-RAY
2008-11-25 ASP A:472 A:472 93.0 0.62 T -92.7 9.1 93.0 0.62 0.0 HOH
5.130
OD1
O
3blp 1 P04745 97.38 0.0 X-RAY
2008-11-18 ASP A:472 X:472 84.0 0.56 T -93.2 8.4 84.0 0.56 0.0 HOH
4.799
OD1
O
1jxk 1 P04745 96.57 0.0 X-RAY
2001-09-14 ASP A:467 A:467 89.0 0.593 T -87.4 5.6 89.0 0.593 0.0 HOH
7.480
O
O
1mfu 1 P04745 96.57 0.0 X-RAY
2002-11-20 ASP A:467 A:467 92.0 0.613 T -88.0 4.7 92.0 0.613 0.0 HOH
5.786
N
O
3dhp 1 P04745 96.37 0.0 X-RAY
2008-07-01 ASP A:472 A:472 95.0 0.633 T -89.3 1.9 95.0 0.633 0.0 HOH
2.799
O
O
1kxq 1 P00690 87.1 0.0 X-RAY
2002-06-19 ASP A:472 A:472 103.0 0.687 T -88.6 8.9 103.0 0.687 0.0 HOH
3.008
OD2
O
ASP B:472 B:472 96.0 0.64 T -86.0 -1.6 NA NA NA
ASP C:472 C:472 95.0 0.633 T -80.9 3.6 NA NA NA
ASP D:472 D:472 100.0 0.667 T -90.9 5.7 NA NA NA
1kxt 1 P00690 87.1 0.0 X-RAY
2002-06-19 ASP A:472 A:472 97.0 0.647 T -80.3 10.3 97.0 0.647 0.0 HOH
2.766
N
O
ASP C:472 C:472 96.0 0.64 T -95.4 2.4 NA NA NA
ASP E:472 E:472 95.0 0.633 T -79.5 9.7 NA NA NA
1kxv 1 P00690 87.1 0.0 X-RAY
2002-06-19 ASP A:472 A:472 102.0 0.68 T -83.2 1.5 102.0 0.68 0.0 HOH
2.738
O
O
ASP B:472 B:472 99.0 0.66 T -98.2 7.8 NA NA NA
1dhk 1 P00690 87.1 0.0 X-RAY
1997-12-24 ASP A:472 A:472 94.0 0.627 T -85.7 6.6 94.0 0.627 0.0 HOH
2.765
O
H1
1ppi 1 P00690 87.1 0.0 X-RAY
1995-05-24 ASP A:472 A:472 105.0 0.7 T -100.0 5.0 105.0 0.7 0.0 HOH
3.729
C
O
3l2l 1 P00690 86.9 0.0 X-RAY
2010-04-14 ASP A:472 A:472 101.0 0.673 T -88.9 3.3 101.0 0.673 0.0 HOH
2.524
H
O
3l2m 1 P00690 86.9 0.0 X-RAY
2010-04-14 ASP A:472 A:472 98.0 0.653 T -92.3 5.8 98.0 0.653 0.0 HOH
2.360
HB3
O
1ua3 1 P00690 86.9 0.0 X-RAY
2003-10-14 ASP A:472 A:472 99.0 0.66 T -87.5 5.0 99.0 0.66 0.0 HOH
2.722
O
O
1vah 1 P00690 86.9 0.0 X-RAY
2005-04-26 ASP A:472 A:472 97.0 0.647 T -83.8 -1.2 97.0 0.647 0.0 HOH
5.807
OD1
O
1jfh 1 P00690 86.9 0.0 X-RAY
1998-12-02 ASP A:472 A:472 101.0 0.673 T -88.9 -8.9 101.0 0.673 0.0 HOH
3.996
O
O
1ose 1 P00690 86.69 0.0 X-RAY
1997-04-01 ASP A:472 A:472 101.0 0.673 T -94.7 16.4 101.0 0.673 0.0 HOH
3.812
C
O
1hx0 1 P00690 86.69 0.0 X-RAY
2001-08-08 ASP A:472 A:472 134.0 0.893 T -81.0 1.3 134.0 0.893 0.0 HOH
2.627
O
O
1wo2 1 P00690 86.69 0.0 X-RAY
2005-03-15 ASP A:472 A:472 101.0 0.673 T -85.5 5.0 101.0 0.673 0.0 HOH
2.740
OD1
O
1bvn 1 P00690 86.69 0.0 X-RAY
1998-09-23 ASP A:472 P:472 114.0 0.76 T -61.0 -48.2 114.0 0.76 0.0 HOH
4.389
OD1
O
1pif 1 P00690 86.49 0.0 X-RAY
1996-12-07 ASP A:472 A:472 95.0 0.633 T -82.3 5.9 95.0 0.633 0.0 HOH
2.982
O
O
1pig 1 P00690 86.49 0.0 X-RAY
1996-12-07 ASP A:472 A:472 100.0 0.667 T -91.7 10.0 100.0 0.667 0.0 BGC
HOH
5.307
3.038
OD1
O
C4
O
4x0n 1 P00690 86.49 0.0 X-RAY
2015-11-25 ASP A:472 A:472 102.0 0.68 T -80.5 1.2 102.0 0.68 0.0 HOH
4.162
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19961-f1 1 P19961 100.0 0.0 ASP A:487 A:487 76.0 0.507 T -85.7 9.0
af-p04746-f1 1 P04746 98.83 0.0 ASP A:487 A:487 80.0 0.533 T -89.6 11.2
af-p0dte7-f1 1 P0DTE7 97.46 0.0 ASP A:487 A:487 80.0 0.533 T -85.0 8.6
af-p0dte8-f1 1 P0DTE8 97.46 0.0 ASP A:487 A:487 78.0 0.52 T -85.7 8.9
af-p0dub6-f1 1 P0DUB6 97.46 0.0 ASP A:487 A:487 79.0 0.527 T -85.7 7.9