Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104122061 . T A CCDS782.1:NM_020978.4:c.1475tTt>tAt_NP_066188.1:p.492F>Y Homo sapiens amylase, alpha 2B (pancreatic) (AMY2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3old 1 P04746 98.99 0.0 X-RAY
2011-04-13 PHE A:477 A:477 1.0 0.005 E -121.6 135.1 1.0 0.005 0.0 HOH
3.366
CA
O
3ole 1 P04746 98.99 0.0 X-RAY
2011-04-13 PHE A:477 A:477 1.0 0.005 E -121.4 137.4 1.0 0.005 0.0 HOH
3.396
CA
O
3olg 1 P04746 98.99 0.0 X-RAY
2011-04-13 PHE A:477 A:477 2.0 0.01 E -124.9 140.7 2.0 0.01 0.0 HOH
4.944
N
O
3oli 1 P04746 98.99 0.0 X-RAY
2011-04-13 PHE A:477 A:477 2.0 0.01 E -126.9 137.0 2.0 0.01 0.0 HOH
3.582
CA
O
6z8l 1 P04746 98.79 0.0 X-RAY
2020-12-02 PHE A:477 A:477 2.0 0.01 E -129.2 133.9 2.0 0.01 0.0 HOH
4.970
HA
O
1b2y 1 P04746 98.79 0.0 X-RAY
2000-02-16 PHE A:477 A:477 2.0 0.01 E -128.1 131.0 2.0 0.01 0.0 HOH
6.154
O
O
1bsi 1 P04746 98.59 0.0 X-RAY
1999-05-18 PHE A:477 A:477 1.0 0.005 E -124.0 134.2 1.0 0.005 0.0 HOH
5.289
N
O
1cpu 1 P04746 98.59 0.0 X-RAY
1999-06-14 PHE A:477 A:477 1.0 0.005 E -121.0 132.8 1.0 0.005 0.0 HOH
3.597
CA
O
1hny 1 P04746 98.59 0.0 X-RAY
1996-03-08 PHE A:477 A:477 2.0 0.01 E -130.9 130.9 2.0 0.01 0.0 HOH
4.191
CA
O
1u2y 1 P04746 98.59 0.0 X-RAY
2004-09-07 PHE A:477 A:477 1.0 0.005 E -120.6 135.0 1.0 0.005 0.0 HOH
5.787
N
O
1u30 1 P04746 98.59 0.0 X-RAY
2004-09-07 PHE A:477 A:477 0.0 0.0 E -120.0 133.2 0.0 0.0 0.0 HOH
4.822
N
O
1u33 1 P04746 98.59 0.0 X-RAY
2004-09-07 PHE A:477 A:477 0.0 0.0 E -122.8 133.5 0.0 0.0 0.0 HOH
3.525
CA
O
1xcw 1 P04746 98.59 0.0 X-RAY
2004-12-07 PHE A:477 A:477 0.0 0.0 E -127.2 134.4 0.0 0.0 0.0 HOH
3.302
CA
O
1xcx 1 P04746 98.59 0.0 X-RAY
2004-12-07 PHE A:477 A:477 1.0 0.005 E -125.3 135.6 1.0 0.005 0.0 HOH
5.192
N
O
1xd0 1 P04746 98.59 0.0 X-RAY
2004-12-07 PHE A:477 A:477 1.0 0.005 E -122.1 133.7 1.0 0.005 0.0 HOH
3.347
CA
O
1xd1 1 P04746 98.59 0.0 X-RAY
2004-12-07 PHE A:477 A:477 2.0 0.01 E -125.3 138.5 2.0 0.01 0.0 HOH
3.668
CA
O
2qmk 1 P04746 98.59 0.0 X-RAY
2008-03-25 PHE A:477 A:477 2.0 0.01 E -130.5 150.0 2.0 0.01 0.0 HOH
5.387
N
O
2qv4 1 P04746 98.59 0.0 X-RAY
2008-03-25 PHE A:477 A:477 1.0 0.005 E -124.0 142.6 1.0 0.005 0.0 HOH
5.078
N
O
3bai 1 P04746 98.59 0.0 X-RAY
2008-03-25 PHE A:477 A:477 1.0 0.005 E -120.7 137.7 1.0 0.005 0.0 HOH
5.133
N
O
3baj 1 P04746 98.59 0.0 X-RAY
2008-03-25 PHE A:477 A:477 2.0 0.01 E -122.3 133.3 2.0 0.01 0.0 HOH
5.397
N
O
3baw 1 P04746 98.59 0.0 X-RAY
2008-03-25 PHE A:477 A:477 2.0 0.01 E -124.6 141.0 2.0 0.01 0.0 HOH
3.584
CA
O
3ij7 1 P04746 98.59 0.0 X-RAY
2009-10-27 PHE A:477 A:477 1.0 0.005 E -120.0 136.2 1.0 0.005 0.0 HOH
5.024
N
O
3ij8 1 P04746 98.59 0.0 X-RAY
2009-10-27 PHE A:477 A:477 1.0 0.005 E -123.4 135.0 1.0 0.005 0.0 HOH
5.013
N
O
3ij9 1 P04746 98.59 0.0 X-RAY
2009-10-27 PHE A:477 A:477 1.0 0.005 E -121.9 133.0 1.0 0.005 0.0 HOH
4.958
N
O
4gqq 1 P04746 98.59 0.0 X-RAY
2012-10-24 PHE A:477 A:477 0.0 0.0 E -127.4 132.0 0.0 0.0 0.0 HOH
4.146
CA
O
4gqr 1 P04746 98.59 0.0 X-RAY
2012-10-24 PHE A:477 A:477 0.0 0.0 E -119.9 132.0 0.0 0.0 0.0 HOH
4.193
C
O
4w93 1 P04746 98.59 0.0 X-RAY
2015-07-15 PHE A:477 A:477 1.0 0.005 E -123.0 132.4 1.0 0.005 0.0 HOH
3.502
CA
O
4x9y 1 P04746 98.59 0.0 X-RAY
2014-12-31 PHE A:477 A:477 1.0 0.005 E -121.3 134.3 1.0 0.005 0.0 HOH
2.585
HA
O
5e0f 1 P04746 98.59 0.0 X-RAY
2016-09-07 PHE A:477 A:477 1.0 0.005 E -127.6 134.4 1.0 0.005 0.0 HOH
4.829
HA
O
5emy 1 P04746 98.59 0.0 X-RAY
2016-07-06 PHE A:477 A:477 1.0 0.005 E -122.2 138.5 1.0 0.005 0.0 HOH
4.910
HA
O
5kez 1 P04746 98.59 0.0 X-RAY
2017-03-29 PHE A:477 A:477 2.0 0.01 E -123.8 134.8 2.0 0.01 0.0 HOH
3.615
CA
O
5u3a 1 P04746 98.59 0.0 X-RAY
2017-12-06 PHE A:477 A:477 1.0 0.005 E -122.6 136.4 1.0 0.005 0.0 HOH
4.912
HA
O
5va9 1 P04746 98.59 0.0 X-RAY
2018-03-28 PHE A:477 A:477 1.0 0.005 E -122.7 134.9 1.0 0.005 0.0 HOH
4.819
N
O
PHE B:477 B:477 1.0 0.005 E -123.0 135.9 NA NA NA
6obx 1 P04746 98.59 0.0 X-RAY
2020-02-12 PHE A:477 A:477 1.0 0.005 E -122.5 134.9 1.0 0.005 0.0 HOH
4.905
HA
O
6ocn 1 P04746 98.59 0.0 X-RAY
2020-02-12 PHE A:477 A:477 1.0 0.005 E -122.8 134.6 1.0 0.005 0.0 HOH
2.558
HA
O
1xgz 1 P04746 98.39 0.0 X-RAY
2005-05-24 PHE A:477 A:477 4.0 0.019 E -124.4 135.8 4.0 0.019 0.0 HOH
3.429
CA
O
1xh0 1 P04746 98.39 0.0 X-RAY
2005-05-24 PHE A:477 A:477 1.0 0.005 E -123.0 133.1 1.0 0.005 0.0 HOH
3.471
CA
O
1xh1 1 P04746 98.39 0.0 X-RAY
2005-05-24 PHE A:477 A:477 1.0 0.005 E -123.6 134.8 1.0 0.005 0.0 HOH
5.153
N
O
1xh2 1 P04746 98.39 0.0 X-RAY
2005-05-24 PHE A:477 A:477 1.0 0.005 E -126.2 139.8 1.0 0.005 0.0 HOH
5.159
N
O
3bak 1 P04746 98.39 0.0 X-RAY
2008-03-25 PHE A:477 A:477 1.0 0.005 E -125.0 141.8 1.0 0.005 0.0 HOH
5.204
N
O
3bax 1 P04746 98.39 0.0 X-RAY
2008-03-25 PHE A:477 A:477 1.0 0.005 E -123.5 136.8 1.0 0.005 0.0 HOH
5.055
N
O
3bay 1 P04746 98.39 0.0 X-RAY
2008-03-25 PHE A:477 A:477 2.0 0.01 E -129.9 148.5 2.0 0.01 0.0 HOH
5.201
N
O
1kgw 1 P04746 98.39 0.0 X-RAY
2002-01-16 PHE A:477 A:477 1.0 0.005 E -123.2 134.2 1.0 0.005 0.0 HOH
3.736
CA
O
2cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 PHE A:477 A:477 1.0 0.005 E -127.5 131.9 1.0 0.005 0.0 HOH
5.817
N
O
3cpu 1 P04746 98.39 0.0 X-RAY
2001-06-30 PHE A:477 A:477 1.0 0.005 E -129.3 128.7 1.0 0.005 0.0 HOH
5.720
C
O
5td4 1 P04746 98.39 0.0 X-RAY
2016-11-02 PHE A:477 A:477 2.0 0.01 E -127.8 135.6 2.0 0.01 0.0 HOH
4.948
N
O
1kgx 1 P04746 98.39 0.0 X-RAY
2002-01-16 PHE A:477 A:477 1.0 0.005 E -121.8 133.9 1.0 0.005 0.0 HOH
5.188
N
O
1kbb 1 P04746 98.39 0.0 X-RAY
2002-04-10 PHE A:477 A:477 2.0 0.01 E -126.6 135.4 2.0 0.01 0.0 HOH
5.172
N
O
1kgu 1 P04746 98.39 0.0 X-RAY
2002-01-16 PHE A:477 A:477 2.0 0.01 E -127.2 130.7 2.0 0.01 0.0 HOH
3.772
CA
O
1kb3 1 P04746 98.39 0.0 X-RAY
2002-05-01 PHE A:477 A:477 0.0 0.0 E -122.5 132.3 0.0 0.0 0.0 HOH
3.512
CA
O
1kbk 1 P04746 98.39 0.0 X-RAY
2002-04-10 PHE A:477 A:477 1.0 0.005 E -125.2 134.8 1.0 0.005 0.0 HOH
5.742
N
O
1c8q 1 P04745 97.58 0.0 X-RAY
2001-06-13 PHE A:477 A:477 2.0 0.01 E -128.8 138.4 2.0 0.01 0.0 HOH
3.686
CA
O
1mfv 1 P04745 97.58 0.0 X-RAY
2002-11-20 PHE A:477 A:477 1.0 0.005 E -126.8 129.7 1.0 0.005 0.0 HOH
6.064
N
O
1smd 1 P04745 97.58 0.0 X-RAY
1996-07-11 PHE A:477 A:477 2.0 0.01 E -123.4 135.5 2.0 0.01 0.0 HOH
5.497
N
O
1xv8 1 P04745 97.58 0.0 X-RAY
2005-10-11 PHE A:477 A:477 4.0 0.019 E -132.7 151.9 4.0 0.019 0.0 HOH
3.218
CA
O
PHE B:477 B:477 3.0 0.014 E -132.6 151.9 3.0 0.014 0.0 HOH
3.218
CA
O
1q4n 1 P04745 97.38 0.0 X-RAY
2004-03-16 PHE A:477 X:477 2.0 0.01 E -127.2 131.9 2.0 0.01 0.0 HOH
3.648
CA
O
1z32 1 P04745 97.38 0.0 X-RAY
2005-05-31 PHE A:477 X:477 2.0 0.01 E -126.5 131.4 2.0 0.01 0.0 HOH
3.605
CA
O
1jxj 1 P04745 97.38 0.0 X-RAY
2001-09-14 PHE A:477 A:477 2.0 0.01 E -118.8 139.9 2.0 0.01 0.0 HOH
3.750
CA
O
1nm9 1 P04745 97.38 0.0 X-RAY
2004-01-20 PHE A:477 A:477 2.0 0.01 E -126.4 132.5 2.0 0.01 0.0 HOH
3.692
CA
O
3blk 1 P04745 97.38 0.0 X-RAY
2008-11-25 PHE A:477 A:477 2.0 0.01 E -122.3 138.4 2.0 0.01 0.0 HOH
3.418
CA
O
3blp 1 P04745 97.38 0.0 X-RAY
2008-11-18 PHE A:477 X:477 3.0 0.014 E -123.4 138.8 3.0 0.014 0.0 HOH
3.544
CA
O
1jxk 1 P04745 96.57 0.0 X-RAY
2001-09-14 PHE A:472 A:472 2.0 0.01 E -127.7 139.4 2.0 0.01 0.0 HOH
3.489
CA
O
1mfu 1 P04745 96.57 0.0 X-RAY
2002-11-20 PHE A:472 A:472 2.0 0.01 E -125.0 136.4 2.0 0.01 0.0 HOH
3.811
CA
O
3dhp 1 P04745 96.37 0.0 X-RAY
2008-07-01 PHE A:477 A:477 2.0 0.01 E -125.7 137.6 2.0 0.01 0.0 HOH
3.503
CA
O
1kxq 1 P00690 87.1 0.0 X-RAY
2002-06-19 PHE A:477 A:477 7.0 0.033 E -124.1 132.5 7.0 0.033 0.0 HOH
3.651
CA
O
PHE B:477 B:477 3.0 0.014 E -119.1 130.7 NA NA NA
PHE C:477 C:477 5.0 0.024 E -119.9 131.7 NA NA NA
PHE D:477 D:477 7.0 0.033 E -124.6 134.0 NA NA NA
1kxt 1 P00690 87.1 0.0 X-RAY
2002-06-19 PHE A:477 A:477 4.0 0.019 E -125.0 136.9 4.0 0.019 0.0 HOH
3.395
CE2
O
PHE C:477 C:477 3.0 0.014 E -117.9 143.8 NA NA NA
PHE E:477 E:477 4.0 0.019 E -133.6 129.0 NA NA NA
1kxv 1 P00690 87.1 0.0 X-RAY
2002-06-19 PHE A:477 A:477 4.0 0.019 E -117.0 134.9 4.0 0.019 0.0 HOH
2.992
O
O
PHE B:477 B:477 4.0 0.019 E -118.0 136.6 NA NA NA
1dhk 1 P00690 87.1 0.0 X-RAY
1997-12-24 PHE A:477 A:477 7.0 0.033 E -125.1 136.6 7.0 0.033 0.0 HOH
2.819
C
H2
1ppi 1 P00690 87.1 0.0 X-RAY
1995-05-24 PHE A:477 A:477 4.0 0.019 E -121.4 139.2 4.0 0.019 0.0 HOH
3.820
CA
O
3l2l 1 P00690 86.9 0.0 X-RAY
2010-04-14 PHE A:477 A:477 3.0 0.014 E -118.9 126.1 3.0 0.014 0.0 HOH
2.855
HA
O
3l2m 1 P00690 86.9 0.0 X-RAY
2010-04-14 PHE A:477 A:477 3.0 0.014 E -119.9 129.1 3.0 0.014 0.0 HOH
2.946
HA
O
1ua3 1 P00690 86.9 0.0 X-RAY
2003-10-14 PHE A:477 A:477 4.0 0.019 E -118.1 126.2 4.0 0.019 0.0 EDO
EDO
HOH
6.233
3.512
4.961
N
CA
N
O1
O1
O
1vah 1 P00690 86.9 0.0 X-RAY
2005-04-26 PHE A:477 A:477 3.0 0.014 E -116.8 145.3 3.0 0.014 0.0 HOH
6.236
C
O
1jfh 1 P00690 86.9 0.0 X-RAY
1998-12-02 PHE A:477 A:477 3.0 0.014 E -117.3 135.7 3.0 0.014 0.0 HOH
3.707
CA
O
1ose 1 P00690 86.69 0.0 X-RAY
1997-04-01 PHE A:477 A:477 2.0 0.01 E -121.9 125.0 2.0 0.01 0.0 HOH
3.534
CA
O
1hx0 1 P00690 86.69 0.0 X-RAY
2001-08-08 PHE A:477 A:477 2.0 0.01 E -120.0 122.5 2.0 0.01 0.0 EDO
EDO
EDO
HOH
3.583
5.616
5.538
4.950
CA
N
N
N
O1
O2
O1
O
1wo2 1 P00690 86.69 0.0 X-RAY
2005-03-15 PHE A:477 A:477 2.0 0.01 E -124.8 118.7 2.0 0.01 0.0 EDO
EDO
HOH
6.339
3.686
4.884
N
CA
N
O1
O1
O
1bvn 1 P00690 86.69 0.0 X-RAY
1998-09-23 PHE A:477 P:477 4.0 0.019 E -111.7 125.0 4.0 0.019 0.0 HOH
5.019
N
O
1pif 1 P00690 86.49 0.0 X-RAY
1996-12-07 PHE A:477 A:477 2.0 0.01 E -120.7 123.7 2.0 0.01 0.0 HOH
3.743
CA
O
1pig 1 P00690 86.49 0.0 X-RAY
1996-12-07 PHE A:477 A:477 2.0 0.01 E -124.2 124.7 2.0 0.01 0.0 BGC
HOH
7.108
3.315
N
CA
O4
O
4x0n 1 P00690 86.49 0.0 X-RAY
2015-11-25 PHE A:477 A:477 2.0 0.01 E -121.9 123.1 2.0 0.01 0.0 HOH
4.055
CA
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19961-f1 1 P19961 100.0 0.0 PHE A:492 A:492 1.0 0.005 E -119.8 133.6
af-p04746-f1 1 P04746 98.83 0.0 PHE A:492 A:492 1.0 0.005 E -120.7 135.4
af-p0dte7-f1 1 P0DTE7 97.46 0.0 PHE A:492 A:492 1.0 0.005 E -120.2 133.5
af-p0dte8-f1 1 P0DTE8 97.46 0.0 PHE A:492 A:492 0.0 0.0 E -120.4 133.2
af-p0dub6-f1 1 P0DUB6 97.46 0.0 PHE A:492 A:492 1.0 0.005 E -121.4 131.6