Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104160135 . C A CCDS783.1:NM_000699.2:c.73Cgg>Agg_NP_000690.1:p.25R>R Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 ARG A:10 A:10 43.0 0.191 -121.0 114.8 43.0 0.191 0.0 HOH
5.498
C
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 ARG A:10 A:10 40.0 0.178 -119.2 117.8 40.0 0.178 0.0 HOH
3.664
O
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 ARG A:10 A:10 42.0 0.187 -109.7 124.5 42.0 0.187 0.0 HOH
3.365
NH2
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 ARG A:10 A:10 43.0 0.191 -122.9 112.9 43.0 0.191 0.0 HOH
3.297
O
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:10 A:10 42.0 0.187 -113.9 117.4 42.0 0.187 0.0 HOH
3.220
NH2
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:10 A:10 43.0 0.191 -116.5 113.4 43.0 0.191 0.0 HOH
3.596
NH2
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:10 A:10 44.0 0.196 -83.5 122.2 44.0 0.196 0.0 HOH
2.839
O
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:10 A:10 39.0 0.173 -111.1 122.1 39.0 0.173 0.0 HOH
3.997
C
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:10 A:10 40.0 0.178 -114.0 120.5 40.0 0.178 0.0 HOH
3.253
NH2
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:10 A:10 35.0 0.156 -110.5 121.6 35.0 0.156 0.0 HOH
3.683
CD
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:10 A:10 40.0 0.178 -117.7 122.6 40.0 0.178 0.0 HOH
4.049
C
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:10 A:10 38.0 0.169 -107.7 126.4 38.0 0.169 0.0 HOH
3.411
CG
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:10 A:10 35.0 0.156 -40.3 117.9 35.0 0.156 0.0 HOH
3.702
CB
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:10 A:10 41.0 0.182 -91.7 123.2 41.0 0.182 0.0 HOH
3.104
NH2
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:10 A:10 42.0 0.187 -105.5 123.8 42.0 0.187 0.0 HOH
3.764
CD
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:10 A:10 42.0 0.187 -110.8 121.8 42.0 0.187 0.0 NA
HOH
7.930
2.537
O
NE
NA
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:10 A:10 41.0 0.182 -106.0 117.1 41.0 0.182 0.0 HOH
3.181
NH2
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:10 A:10 43.0 0.191 -96.9 120.8 43.0 0.191 0.0 HOH
2.812
NH2
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:10 A:10 42.0 0.187 -102.5 116.7 42.0 0.187 0.0 HOH
3.300
NH2
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 ARG A:10 A:10 40.0 0.178 -99.7 122.4 40.0 0.178 0.0 HOH
3.725
CD
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 ARG A:10 A:10 43.0 0.191 -100.9 115.0 43.0 0.191 0.0 HOH
2.713
O
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 ARG A:10 A:10 36.0 0.16 -123.4 112.4 36.0 0.16 0.0 HOH
3.272
NH2
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 ARG A:10 A:10 44.0 0.196 -114.0 122.0 44.0 0.196 0.0 HOH
2.846
HD2
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 ARG A:10 A:10 38.0 0.169 -112.0 128.6 38.0 0.169 0.0 HOH
2.650
HD2
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 ARG A:10 A:10 43.0 0.191 -115.5 122.4 43.0 0.191 0.0 HOH
2.879
HD2
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 ARG A:10 A:10 40.0 0.178 -114.0 126.4 40.0 0.178 0.0 HOH
3.572
CD
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 ARG A:10 A:10 42.0 0.187 -110.8 121.7 42.0 0.187 0.0 HOH
2.808
O
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 ARG A:10 A:10 44.0 0.196 -118.3 113.1 44.0 0.196 0.0 HOH
3.279
CD
O
ARG B:10 B:10 52.0 0.231 -118.2 114.0 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 ARG A:10 A:10 42.0 0.187 -111.9 122.8 42.0 0.187 0.0 HOH
2.756
O
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 ARG A:10 A:10 42.0 0.187 -114.5 122.1 42.0 0.187 0.0 HOH
2.862
HD2
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:10 A:10 44.0 0.196 -112.8 116.6 44.0 0.196 0.0 HOH
3.248
NH2
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:10 A:10 43.0 0.191 -105.3 118.3 43.0 0.191 0.0 HOH
2.914
O
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:10 A:10 36.0 0.16 -108.2 120.0 36.0 0.16 0.0 HOH
3.322
CD
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:10 A:10 40.0 0.178 -100.9 123.0 40.0 0.178 0.0 HOH
3.426
CD
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:10 A:10 48.0 0.213 -65.4 123.1 48.0 0.213 0.0 HOH
3.409
CD
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:10 A:10 39.0 0.173 -116.6 121.6 39.0 0.173 0.0 HOH
3.555
N
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:10 A:10 38.0 0.169 -100.7 126.5 38.0 0.169 0.0 HOH
3.254
NH2
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:10 A:10 39.0 0.173 -103.3 124.0 39.0 0.173 0.0 HOH
3.242
NH2
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:10 A:10 42.0 0.187 -112.5 124.6 42.0 0.187 0.0 HOH
3.748
NH2
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:10 A:10 39.0 0.173 -114.5 122.0 39.0 0.173 0.0 HOH
3.155
NH2
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:10 A:10 28.0 0.124 -118.5 114.7 28.0 0.124 0.0 NA
HOH
8.819
2.703
O
NH2
NA
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:10 A:10 43.0 0.191 -107.4 122.9 43.0 0.191 0.0 HOH
3.063
NH2
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:10 A:10 37.0 0.164 -95.8 125.3 37.0 0.164 0.0 HOH
2.736
O
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 ARG A:10 A:10 43.0 0.191 -121.7 127.7 43.0 0.191 0.0 HOH
2.172
HE
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:10 A:10 39.0 0.173 -107.6 122.1 39.0 0.173 0.0 HOH
3.218
O
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ARG A:10 A:10 37.0 0.164 -111.3 120.5 37.0 0.164 0.0 HOH
4.046
C
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ARG A:10 A:10 44.0 0.196 -111.9 117.0 44.0 0.196 0.0 HOH
3.803
CA
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 ARG A:10 A:10 38.0 0.169 -114.1 123.2 38.0 0.169 0.0 HOH
3.429
CD
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 ARG A:10 A:10 38.0 0.169 -95.5 127.8 38.0 0.169 0.0 HOH
3.677
CG
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 ARG A:10 A:10 45.0 0.2 -88.8 128.4 45.0 0.2 0.0 HOH
3.395
CD
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 ARG A:10 A:10 37.0 0.164 -116.7 121.4 37.0 0.164 0.0 HOH
3.181
NH2
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 ARG A:10 A:10 34.0 0.151 -116.8 126.6 34.0 0.151 0.0 HOH
3.055
O
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 ARG A:10 A:10 44.0 0.196 -125.7 130.4 44.0 0.196 0.0 HOH
2.412
O
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 ARG A:10 A:10 45.0 0.2 -124.0 109.6 45.0 0.2 0.0 HOH
3.825
C
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 ARG A:10 A:10 48.0 0.213 -49.3 109.1 48.0 0.213 0.0 HOH
6.648
O
O
ARG B:10 B:10 48.0 0.213 -49.3 109.1 48.0 0.213 0.0 HOH
6.648
O
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 ARG A:10 X:10 40.0 0.178 -123.7 134.8 40.0 0.178 0.0 HOH
2.264
O
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 ARG A:10 A:10 35.0 0.156 -120.8 124.7 35.0 0.156 0.0 HOH
3.398
CD
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 ARG A:10 X:10 37.0 0.164 -127.0 128.6 37.0 0.164 0.0 HOH
3.238
NH2
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 ARG A:10 A:10 39.0 0.173 -129.0 122.8 39.0 0.173 0.0 HOH
3.299
NH2
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 ARG A:10 A:10 39.0 0.173 -124.8 128.8 39.0 0.173 0.0 HOH
3.617
CD
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 ARG A:10 X:10 33.0 0.147 -125.3 127.2 33.0 0.147 0.0 HOH
3.493
NH2
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 ARG A:10 A:10 32.0 0.142 -126.6 126.1 32.0 0.142 0.0 HOH
3.100
O
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 ARG A:10 A:10 37.0 0.164 -130.1 123.5 37.0 0.164 0.0 HOH
3.341
NH2
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 ARG A:10 A:10 38.0 0.169 -124.1 125.8 38.0 0.169 0.0 HOH
3.058
O
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:10 A:10 35.0 0.156 -110.4 122.0 35.0 0.156 0.0 HOH
2.824
O
O
ARG B:10 B:10 30.0 0.133 -98.2 127.5 NA NA NA
ARG C:10 C:10 26.0 0.116 -88.7 123.3 NA NA NA
ARG D:10 D:10 40.0 0.178 -112.8 131.0 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:10 A:10 35.0 0.156 -88.7 127.7 35.0 0.156 0.0 HOH
2.373
NH1
O
ARG C:10 C:10 30.0 0.133 -96.9 120.2 NA NA NA
ARG E:10 E:10 37.0 0.164 -91.1 118.6 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:10 A:10 31.0 0.138 -107.4 131.5 31.0 0.138 0.0 HOH
2.845
O
O
ARG B:10 B:10 28.0 0.124 -110.1 132.9 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 ARG A:10 A:10 40.0 0.178 -94.1 128.7 40.0 0.178 0.0 HOH
3.096
CD
H2
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 ARG A:10 A:10 33.0 0.147 -107.6 126.7 33.0 0.147 0.0 HOH
3.295
O
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 ARG A:10 A:10 39.0 0.173 -91.1 132.5 39.0 0.173 0.0 HOH
5.311
C
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 ARG A:10 A:10 40.0 0.178 -122.9 129.1 40.0 0.178 0.0 HOH
2.069
HE
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 ARG A:10 A:10 39.0 0.173 -116.7 127.4 39.0 0.173 0.0 HOH
2.711
HH22
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 ARG A:10 A:10 39.0 0.173 -95.1 124.8 39.0 0.173 0.0 HOH
3.109
NH2
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 ARG A:10 A:10 39.0 0.173 -110.1 125.8 39.0 0.173 0.0 HOH
2.859
O
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 ARG A:10 A:10 37.0 0.164 -104.3 125.5 37.0 0.164 0.0 HOH
2.922
NH1
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 ARG A:10 A:10 41.0 0.182 -100.5 125.1 41.0 0.182 0.0 HOH
3.123
O
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 ARG A:10 A:10 45.0 0.2 -90.0 120.0 45.0 0.2 0.0 HOH
2.982
NE
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 ARG A:10 P:10 37.0 0.164 -86.9 137.5 37.0 0.164 0.0 HOH
3.994
C
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 ARG A:10 A:10 37.0 0.164 -87.8 128.9 37.0 0.164 0.0 HOH
3.299
CD
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 ARG A:10 A:10 35.0 0.156 -86.1 119.7 35.0 0.156 0.0 HOH
3.186
NH2
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 ARG A:10 A:10 39.0 0.173 -99.2 126.4 39.0 0.173 0.0 HOH
4.088
C
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 ARG A:25 A:25 36.0 0.16 -120.3 112.9
af-p19961-f1 1 P19961 98.83 0.0 ARG A:25 A:25 39.0 0.173 -114.4 111.0
af-p0dte7-f1 1 P0DTE7 96.87 0.0 ARG A:25 A:25 41.0 0.182 -113.1 110.1
af-p0dte8-f1 1 P0DTE8 96.87 0.0 ARG A:25 A:25 40.0 0.178 -114.2 109.6
af-p0dub6-f1 1 P0DUB6 96.87 0.0 ARG A:25 A:25 38.0 0.169 -112.8 110.6