Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104160196 . G A CCDS783.1:NM_000699.2:c.134cGa>cAa_NP_000690.1:p.45R>Q Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 ARG A:30 A:30 96.0 0.427 I -85.7 -16.9 96.0 0.427 0.0 HOH
2.805
NH2
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 ARG A:30 A:30 92.0 0.409 I -84.4 -20.5 92.0 0.409 0.0 HOH
2.756
NH2
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 ARG A:30 A:30 96.0 0.427 I -88.6 -18.5 96.0 0.427 0.0 HOH
2.712
NH2
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 ARG A:30 A:30 95.0 0.422 I -87.5 -18.0 95.0 0.422 0.0 HOH
2.779
NH2
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:30 A:30 95.0 0.422 I -86.1 -19.0 95.0 0.422 0.0 HOH
2.761
O
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:30 A:30 88.0 0.391 I -83.7 -26.8 88.0 0.391 0.0 HOH
2.584
NH2
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:30 A:30 90.0 0.4 I -87.0 -22.2 90.0 0.4 0.0 HOH
2.760
NH1
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:30 A:30 93.0 0.413 I -85.2 -14.1 93.0 0.413 0.0 HOH
3.070
NH2
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:30 A:30 95.0 0.422 I -83.4 -22.5 95.0 0.422 0.0 HOH
2.800
NH2
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:30 A:30 92.0 0.409 I -86.7 -18.2 92.0 0.409 0.0 HOH
2.778
NH2
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:30 A:30 95.0 0.422 I -85.3 -14.8 95.0 0.422 0.0 HOH
2.797
NH1
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:30 A:30 84.0 0.373 I -81.6 -29.0 84.0 0.373 0.0 HOH
2.621
NH1
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:30 A:30 85.0 0.378 I -84.6 -23.3 85.0 0.378 0.0 HOH
2.747
NH2
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:30 A:30 92.0 0.409 I -82.1 -23.8 92.0 0.409 0.0 HOH
2.707
NH2
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:30 A:30 93.0 0.413 I -82.7 -13.9 93.0 0.413 0.0 HOH
2.727
NH1
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:30 A:30 93.0 0.413 I -86.1 -26.4 93.0 0.413 0.0 HOH
2.725
NH2
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:30 A:30 92.0 0.409 I -82.9 -18.9 92.0 0.409 0.0 HOH
2.886
NH2
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:30 A:30 93.0 0.413 I -88.9 -17.4 93.0 0.413 0.0 HOH
2.690
NH2
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:30 A:30 91.0 0.404 I -87.2 -20.7 91.0 0.404 0.0 HOH
2.740
NH2
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 ARG A:30 A:30 87.0 0.387 I -93.7 -12.7 87.0 0.387 0.0 0XR
0XR
HOH
4.790
7.788
2.607
NH1
NH1
O
C1'
C4'
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 ARG A:30 A:30 90.0 0.4 I -86.9 -16.8 90.0 0.4 0.0 HOH
2.917
O
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 ARG A:30 A:30 90.0 0.4 I -91.8 -15.6 90.0 0.4 0.0 HOH
2.731
NH2
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 ARG A:30 A:30 92.0 0.409 I -89.4 -17.8 92.0 0.409 0.0 HOH
1.983
HH11
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 ARG A:30 A:30 91.0 0.404 I -86.8 -16.3 91.0 0.404 0.0 HOH
2.022
HH11
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 ARG A:30 A:30 90.0 0.4 I -89.7 -17.2 90.0 0.4 0.0 HOH
2.038
HH22
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 ARG A:30 A:30 93.0 0.413 I -90.3 -13.0 93.0 0.413 0.0 HOH
2.977
NH2
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 ARG A:30 A:30 89.0 0.396 I -90.3 -16.9 89.0 0.396 0.0 HOH
1.996
HH11
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 ARG A:30 A:30 84.0 0.373 I -82.5 -23.2 84.0 0.373 0.0 HOH
9.773
NH2
O
ARG B:30 B:30 90.0 0.4 I -82.8 -23.7 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 ARG A:30 A:30 89.0 0.396 I -89.6 -17.2 89.0 0.396 0.0 HOH
2.007
HH11
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 ARG A:30 A:30 90.0 0.4 I -89.9 -18.2 90.0 0.4 0.0 HOH
2.001
HH11
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:30 A:30 94.0 0.418 I -87.7 -19.5 94.0 0.418 0.0 HOH
2.766
NH1
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:30 A:30 95.0 0.422 I -87.6 -17.1 95.0 0.422 0.0 HOH
2.734
NH1
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:30 A:30 93.0 0.413 I -81.1 -15.3 93.0 0.413 0.0 HOH
2.663
NH2
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:30 A:30 92.0 0.409 I -86.4 -16.1 92.0 0.409 0.0 HOH
2.824
NH2
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:30 A:30 93.0 0.413 I -91.2 -12.9 93.0 0.413 0.0 HOH
2.764
NH2
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:30 A:30 95.0 0.422 I -85.6 -19.9 95.0 0.422 0.0 HOH
2.797
NH1
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:30 A:30 95.0 0.422 I -85.0 -19.9 95.0 0.422 0.0 HOH
2.928
NH2
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:30 A:30 90.0 0.4 I -86.2 -20.2 90.0 0.4 0.0 HOH
2.812
NH2
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:30 A:30 96.0 0.427 I -83.8 -20.2 96.0 0.427 0.0 HOH
2.728
NH2
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:30 A:30 93.0 0.413 I -81.2 -22.7 93.0 0.413 0.0 HOH
2.795
NH2
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:30 A:30 92.0 0.409 I -85.5 -24.7 92.0 0.409 0.0 HOH
2.743
NH2
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:30 A:30 92.0 0.409 I -84.3 -14.1 92.0 0.409 0.0 HOH
2.836
NH2
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:30 A:30 95.0 0.422 I -86.7 -17.3 95.0 0.422 0.0 HOH
2.779
NH1
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 ARG A:30 A:30 93.0 0.413 I -91.1 -14.5 93.0 0.413 0.0 HOH
2.033
HH22
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:30 A:30 94.0 0.418 I -87.8 -17.7 94.0 0.418 0.0 HOH
2.705
NH2
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ARG A:30 A:30 96.0 0.427 I -84.7 -18.7 96.0 0.427 0.0 HOH
2.884
NH2
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ARG A:30 A:30 96.0 0.427 I -85.1 -17.8 96.0 0.427 0.0 HOH
2.749
NH1
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 ARG A:30 A:30 93.0 0.413 I -91.9 -16.3 93.0 0.413 0.0 HOH
2.785
NH2
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 ARG A:30 A:30 94.0 0.418 I -84.6 -17.6 94.0 0.418 0.0 HOH
2.847
NH2
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 ARG A:30 A:30 94.0 0.418 I -87.0 -19.5 94.0 0.418 0.0 HOH
2.881
NH2
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 ARG A:30 A:30 96.0 0.427 I -85.8 -20.6 96.0 0.427 0.0 HOH
2.685
NH2
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 ARG A:30 A:30 95.0 0.422 I -87.2 -23.8 95.0 0.422 0.0 HOH
2.774
NH2
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 ARG A:30 A:30 94.0 0.418 I -90.0 -16.2 94.0 0.418 0.0 HOH
2.811
O
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 ARG A:30 A:30 87.0 0.387 I -90.7 -10.9 87.0 0.387 0.0 HOH
2.816
NH2
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 ARG A:30 A:30 91.0 0.404 I -82.5 -15.4 91.0 0.404 0.0 HOH
5.607
O
O
ARG B:30 B:30 91.0 0.404 I -82.5 -15.4 91.0 0.404 0.0 HOH
5.607
O
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 ARG A:30 X:30 90.0 0.4 I -90.1 -18.9 90.0 0.4 0.0 HOH
2.679
O
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 ARG A:30 A:30 91.0 0.404 I -88.0 -10.6 91.0 0.404 0.0 HOH
2.663
NH1
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 ARG A:30 X:30 87.0 0.387 I -90.5 -12.5 87.0 0.387 0.0 HOH
2.814
NH2
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 ARG A:30 A:30 95.0 0.422 I -87.3 -16.2 95.0 0.422 0.0 HOH
2.802
NH2
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 ARG A:30 A:30 94.0 0.418 I -88.2 -18.2 94.0 0.418 0.0 HOH
2.890
NH2
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 ARG A:30 X:30 94.0 0.418 I -88.8 -20.0 94.0 0.418 0.0 HOH
2.676
NH2
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 ARG A:30 A:30 92.0 0.409 I -87.6 -18.0 92.0 0.409 0.0 HOH
2.585
NH1
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 ARG A:30 A:30 92.0 0.409 I -86.8 -13.4 92.0 0.409 0.0 HOH
2.812
NH2
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 ARG A:30 A:30 92.0 0.409 I -89.1 -17.3 92.0 0.409 0.0 HOH
2.782
O
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:30 A:30 91.0 0.404 I -82.3 -12.9 91.0 0.404 0.0 HOH
2.713
NH1
O
ARG B:30 B:30 92.0 0.409 I -81.2 -7.1 NA NA NA
ARG C:30 C:30 89.0 0.396 I -76.3 -17.8 NA NA NA
ARG D:30 D:30 89.0 0.396 I -81.6 -17.3 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:30 A:30 83.0 0.369 I -75.8 -23.9 83.0 0.369 0.0 HOH
2.646
O
O
ARG C:30 C:30 91.0 0.404 I -80.9 -12.3 NA NA NA
ARG E:30 E:30 89.0 0.396 I -87.3 -1.9 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:30 A:30 97.0 0.431 I -86.1 -15.6 97.0 0.431 0.0 HOH
2.751
NH2
O
ARG B:30 B:30 96.0 0.427 I -86.1 -17.0 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 ARG A:30 A:30 97.0 0.431 I -85.4 -12.7 97.0 0.431 0.0 HOH
1.614
HH22
H2
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 ARG A:30 A:30 99.0 0.44 I -81.4 -17.9 99.0 0.44 0.0 HOH
2.871
NH2
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 ARG A:30 A:30 95.0 0.422 I -82.3 -23.9 95.0 0.422 0.0 HOH
2.771
O
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 ARG A:30 A:30 96.0 0.427 I -84.3 -20.8 96.0 0.427 0.0 HOH
1.874
HH21
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 ARG A:30 A:30 96.0 0.427 I -89.2 -15.6 96.0 0.427 0.0 HOH
2.172
HH11
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 ARG A:30 A:30 91.0 0.404 I -88.4 -16.1 91.0 0.404 0.0 EDO
HOH
3.355
2.719
CG
O
O2
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 ARG A:30 A:30 95.0 0.422 I -87.1 -15.5 95.0 0.422 0.0 HOH
2.778
O
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 ARG A:30 A:30 93.0 0.413 I -87.3 -24.1 93.0 0.413 0.0 HOH
2.756
NH2
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 ARG A:30 A:30 95.0 0.422 I -88.8 -16.5 95.0 0.422 0.0 EDO
HOH
3.335
2.746
CG
O
O2
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 ARG A:30 A:30 94.0 0.418 I -84.8 -16.7 94.0 0.418 0.0 EDO
HOH
3.414
2.733
CG
O
O2
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 ARG A:30 P:30 87.0 0.387 I -67.0 -27.9 87.0 0.387 0.0 HOH
2.839
NH2
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 ARG A:30 A:30 93.0 0.413 I -82.2 -25.5 93.0 0.413 0.0 HOH
2.747
NH2
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 ARG A:30 A:30 89.0 0.396 I -84.3 -21.3 89.0 0.396 0.0 HOH
2.816
NH2
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 ARG A:30 A:30 92.0 0.409 I -89.2 -16.3 92.0 0.409 0.0 HOH
2.414
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 ARG A:45 A:45 97.0 0.431 I -79.0 -20.4
af-p19961-f1 1 P19961 98.83 0.0 ARG A:45 A:45 98.0 0.436 I -81.5 -20.1
af-p0dte7-f1 1 P0DTE7 96.87 0.0 ARG A:45 A:45 96.0 0.427 I -81.1 -20.8
af-p0dte8-f1 1 P0DTE8 96.87 0.0 ARG A:45 A:45 96.0 0.427 I -80.1 -21.5
af-p0dub6-f1 1 P0DUB6 96.87 0.0 ARG A:45 A:45 96.0 0.427 I -80.7 -21.5