Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104160703 . C A CCDS783.1:NM_000699.2:c.296aCt>aAt_NP_000690.1:p.99T>N Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 THR A:84 A:84 53.0 0.379 H -68.3 -51.7 53.0 0.379 0.0 HOH
4.391
O
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 THR A:84 A:84 51.0 0.364 H -61.3 -51.0 51.0 0.364 0.0 HOH
4.335
CG2
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 THR A:84 A:84 51.0 0.364 H -63.6 -47.8 51.0 0.364 0.0 HOH
5.105
O
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 THR A:84 A:84 56.0 0.4 H -59.6 -56.2 56.0 0.4 0.0 HOH
2.671
OG1
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 THR A:84 A:84 50.0 0.357 H -62.7 -51.5 50.0 0.357 0.0 HOH
3.702
CG2
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 THR A:84 A:84 51.0 0.364 H -63.5 -48.7 51.0 0.364 0.0 HOH
5.046
O
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 THR A:84 A:84 49.0 0.35 H -63.8 -50.3 49.0 0.35 0.0 HOH
2.805
OG1
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 THR A:84 A:84 52.0 0.371 H -60.3 -54.0 52.0 0.371 0.0 HOH
4.312
O
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 THR A:84 A:84 50.0 0.357 H -63.9 -51.8 50.0 0.357 0.0 HOH
5.053
O
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 THR A:84 A:84 50.0 0.357 H -63.3 -51.0 50.0 0.357 0.0 HOH
5.088
O
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 THR A:84 A:84 47.0 0.336 H -62.5 -52.6 47.0 0.336 0.0 HOH
7.367
N
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 THR A:84 A:84 37.0 0.264 H -61.8 -60.7 37.0 0.264 0.0 HOH
2.735
OG1
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 THR A:84 A:84 37.0 0.264 H -62.5 -54.7 37.0 0.264 0.0 HOH
2.619
OG1
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 THR A:84 A:84 51.0 0.364 H -61.0 -53.2 51.0 0.364 0.0 HOH
4.490
O
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 THR A:84 A:84 51.0 0.364 H -65.0 -59.8 51.0 0.364 0.0 HOH
4.999
O
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 THR A:84 A:84 54.0 0.386 H -61.1 -51.6 54.0 0.386 0.0 HOH
2.911
OG1
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 THR A:84 A:84 53.0 0.379 H -64.9 -48.8 53.0 0.379 0.0 HOH
2.603
OG1
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 THR A:84 A:84 51.0 0.364 H -65.7 -48.4 51.0 0.364 0.0 HOH
3.671
CG2
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 THR A:84 A:84 52.0 0.371 H -63.5 -49.9 52.0 0.371 0.0 HOH
3.647
CG2
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 THR A:84 A:84 54.0 0.386 H -63.4 -47.5 54.0 0.386 0.0 0XR
HOH
9.250
3.291
CB
OG1
C5
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 THR A:84 A:84 53.0 0.379 H -63.0 -50.9 53.0 0.379 0.0 HOH
2.757
OG1
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 THR A:84 A:84 54.0 0.386 H -62.8 -50.2 54.0 0.386 0.0 HOH
2.599
OG1
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 THR A:84 A:84 52.0 0.371 H -60.0 -50.1 52.0 0.371 0.0 HOH
2.174
HG1
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 THR A:84 A:84 52.0 0.371 H -60.7 -50.2 52.0 0.371 0.0 HOH
2.012
HG1
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 THR A:84 A:84 53.0 0.379 H -61.5 -49.1 53.0 0.379 0.0 HOH
2.782
HG1
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 THR A:84 A:84 53.0 0.379 H -63.6 -46.7 53.0 0.379 0.0 HOH
2.417
OG1
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 THR A:84 A:84 52.0 0.371 H -59.3 -50.2 52.0 0.371 0.0 HOH
2.722
HG1
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 THR A:84 A:84 51.0 0.364 H -62.9 -52.1 51.0 0.364 0.0 HOH
4.281
O
O
THR B:84 B:84 41.0 0.293 H -63.0 -51.5 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 THR A:84 A:84 54.0 0.386 H -60.6 -49.1 54.0 0.386 0.0 HOH
2.683
HG1
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 THR A:84 A:84 54.0 0.386 H -60.0 -49.6 54.0 0.386 0.0 HOH
2.715
HG1
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 THR A:84 A:84 52.0 0.371 H -61.7 -50.2 52.0 0.371 0.0 HOH
2.713
OG1
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 THR A:84 A:84 50.0 0.357 H -63.4 -49.9 50.0 0.357 0.0 HOH
2.647
OG1
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 THR A:84 A:84 51.0 0.364 H -65.9 -47.4 51.0 0.364 0.0 HOH
2.460
OG1
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 THR A:84 A:84 53.0 0.379 H -63.8 -49.7 53.0 0.379 0.0 MPD
HOH
4.487
2.862
CG2
OG1
C5
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 THR A:84 A:84 52.0 0.371 H -67.1 -48.0 52.0 0.371 0.0 HOH
3.880
OG1
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 THR A:84 A:84 47.0 0.336 H -57.2 -53.7 47.0 0.336 0.0 HOH
4.666
CG2
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 THR A:84 A:84 46.0 0.329 H -59.5 -52.1 46.0 0.329 0.0 HOH
3.229
OG1
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 THR A:84 A:84 47.0 0.336 H -61.4 -53.8 47.0 0.336 0.0 HOH
3.417
OG1
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 THR A:84 A:84 46.0 0.329 H -60.1 -52.3 46.0 0.329 0.0 HOH
3.120
OG1
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 THR A:84 A:84 50.0 0.357 H -62.9 -53.7 50.0 0.357 0.0 HOH
3.025
OG1
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 THR A:84 A:84 37.0 0.264 H -61.5 -51.4 37.0 0.264 0.0 HOH
2.799
OG1
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 THR A:84 A:84 51.0 0.364 H -62.5 -55.3 51.0 0.364 0.0 HOH
2.872
OG1
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 THR A:84 A:84 44.0 0.314 H -63.0 -52.2 44.0 0.314 0.0 HOH
4.684
O
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 THR A:84 A:84 54.0 0.386 H -63.9 -49.4 54.0 0.386 0.0 HOH
1.926
HG1
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 THR A:84 A:84 54.0 0.386 H -65.1 -49.4 54.0 0.386 0.0 HOH
2.704
OG1
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 THR A:84 A:84 53.0 0.379 H -64.9 -50.1 53.0 0.379 0.0 HOH
4.347
O
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 THR A:84 A:84 54.0 0.386 H -66.3 -47.9 54.0 0.386 0.0 HOH
3.514
CG2
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 THR A:84 A:84 52.0 0.371 H -67.1 -47.6 52.0 0.371 0.0 HOH
3.832
OG1
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 THR A:84 A:84 44.0 0.314 H -63.6 -53.5 44.0 0.314 0.0 HOH
4.133
CG2
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 THR A:84 A:84 52.0 0.371 H -63.3 -52.7 52.0 0.371 0.0 HOH
4.529
O
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 THR A:84 A:84 52.0 0.371 H -62.5 -50.8 52.0 0.371 0.0 HOH
4.518
O
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 THR A:84 A:84 52.0 0.371 H -62.1 -51.4 52.0 0.371 0.0 HOH
2.599
OG1
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 THR A:84 A:84 56.0 0.4 H -62.3 -50.1 56.0 0.4 0.0 HOH
2.458
OG1
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 THR A:84 A:84 55.0 0.393 H -62.3 -50.4 55.0 0.393 0.0 HOH
3.939
OG1
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 THR A:84 A:84 57.0 0.407 H -45.1 -58.5 57.0 0.407 0.0 HOH
8.205
CG2
O
THR B:84 B:84 57.0 0.407 H -45.2 -58.4 57.0 0.407 0.0 HOH
8.204
CG2
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 THR A:84 X:84 52.0 0.371 H -61.9 -50.6 52.0 0.371 0.0 HOH
2.574
OG1
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 THR A:84 A:84 52.0 0.371 H -63.4 -47.2 52.0 0.371 0.0 HOH
4.344
OG1
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 THR A:84 X:84 52.0 0.371 H -61.6 -46.6 52.0 0.371 0.0 HOH
2.441
OG1
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 THR A:84 A:84 54.0 0.386 H -58.1 -52.8 54.0 0.386 0.0 HOH
2.565
OG1
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 THR A:84 A:84 54.0 0.386 H -57.1 -53.2 54.0 0.386 0.0 HOH
2.566
OG1
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 THR A:84 X:84 55.0 0.393 H -57.3 -49.8 55.0 0.393 0.0 HOH
2.520
OG1
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 THR A:84 A:84 53.0 0.379 H -61.5 -48.2 53.0 0.379 0.0 HOH
2.457
OG1
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 THR A:84 A:84 53.0 0.379 H -60.5 -51.8 53.0 0.379 0.0 HOH
2.444
OG1
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 THR A:84 A:84 53.0 0.379 H -62.8 -49.8 53.0 0.379 0.0 HOH
2.671
OG1
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 THR A:84 A:84 53.0 0.379 H -65.8 -49.1 53.0 0.379 0.0 HOH
2.646
OG1
O
THR B:84 B:84 57.0 0.407 H -64.4 -51.1 NA NA NA
THR C:84 C:84 51.0 0.364 H -63.9 -51.3 NA NA NA
THR D:84 D:84 54.0 0.386 H -65.5 -48.6 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 THR A:84 A:84 53.0 0.379 H -69.4 -48.7 53.0 0.379 0.0 HOH
2.298
OG1
O
THR C:84 C:84 51.0 0.364 H -68.0 -49.6 NA NA NA
THR E:84 E:84 53.0 0.379 H -66.5 -42.8 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 THR A:84 A:84 48.0 0.343 H -67.1 -49.3 48.0 0.343 0.0 HOH
2.726
OG1
O
THR B:84 B:84 53.0 0.379 H -61.0 -49.8 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 THR A:84 A:84 53.0 0.379 H -64.3 -51.7 53.0 0.379 0.0 HOH
2.961
OG1
H2
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 THR A:84 A:84 55.0 0.393 H -65.5 -49.7 55.0 0.393 0.0 HOH
2.767
OG1
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 THR A:84 A:84 52.0 0.371 H -70.2 -52.2 52.0 0.371 0.0 HOH
4.084
CG2
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 THR A:84 A:84 53.0 0.379 H -66.7 -49.1 53.0 0.379 0.0 HOH
2.458
HG1
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 THR A:84 A:84 54.0 0.386 H -61.4 -47.4 54.0 0.386 0.0 HOH
2.734
OG1
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 THR A:84 A:84 53.0 0.379 H -56.7 -52.6 53.0 0.379 0.0 HOH
2.825
OG1
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 THR A:84 A:84 51.0 0.364 H -61.5 -52.4 51.0 0.364 0.0 HOH
2.692
OG1
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 THR A:84 A:84 53.0 0.379 H -63.0 -50.3 53.0 0.379 0.0 HOH
3.340
OG1
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 THR A:84 A:84 55.0 0.393 H -60.6 -49.6 55.0 0.393 0.0 HOH
2.714
OG1
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 THR A:84 A:84 54.0 0.386 H -63.1 -52.5 54.0 0.386 0.0 HOH
2.700
OG1
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 THR A:84 P:84 46.0 0.329 H -59.3 -55.0 46.0 0.329 0.0 HOH
4.671
O
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 THR A:84 A:84 52.0 0.371 H -66.9 -52.5 52.0 0.371 0.0 HOH
3.539
CG2
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 THR A:84 A:84 53.0 0.379 H -63.9 -53.0 53.0 0.379 0.0 HOH
3.077
OG1
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 THR A:84 A:84 54.0 0.386 H -61.3 -50.2 54.0 0.386 0.0 HOH
2.742
OG1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 THR A:99 A:99 45.0 0.321 H -58.9 -51.4
af-p19961-f1 1 P19961 98.83 0.0 THR A:99 A:99 49.0 0.35 H -59.2 -51.5
af-p0dte7-f1 1 P0DTE7 96.87 0.0 THR A:99 A:99 51.0 0.364 H -59.5 -51.5
af-p0dte8-f1 1 P0DTE8 96.87 0.0 THR A:99 A:99 51.0 0.364 H -59.1 -51.7
af-p0dub6-f1 1 P0DUB6 96.87 0.0 THR A:99 A:99 52.0 0.371 H -59.6 -51.2