Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104161576 . A C CCDS783.1:NM_000699.2:c.359aAc>aCc_NP_000690.1:p.120N>T Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 ASN A:105 A:105 45.0 0.281 T -57.0 -18.2 45.0 0.281 0.0 GLC
G6D
HOH
9.626
5.748
5.259
N
N
OD1
C6
C6
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 ASN A:105 A:105 50.0 0.312 T -64.6 -22.6 50.0 0.312 0.0 HOH
3.483
N
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 ASN A:105 A:105 47.0 0.294 T -67.3 -15.4 47.0 0.294 0.0 GLC
GLC
HOH
9.385
4.982
2.671
N
N
OD1
C6
O6
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 ASN A:105 A:105 44.0 0.275 T -51.4 -23.4 44.0 0.275 0.0 HOH
2.904
N
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 ASN A:105 A:105 52.0 0.325 T -64.7 -20.3 52.0 0.325 0.0 HOH
3.467
N
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 ASN A:105 A:105 53.0 0.331 T -69.2 -18.9 53.0 0.331 0.0 LAG
HOH
5.421
3.524
N
N
OD6
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 ASN A:105 A:105 52.0 0.325 T -62.5 -17.3 52.0 0.325 0.0 LM2
HOH
5.119
3.098
N
N
OD6
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 ASN A:105 A:105 48.0 0.3 T -65.6 -22.0 48.0 0.3 0.0 HOH
3.392
N
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 ASN A:105 A:105 48.0 0.3 T -63.1 -20.1 48.0 0.3 0.0 HOH
3.493
N
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 ASN A:105 A:105 50.0 0.312 T -63.4 -20.7 50.0 0.312 0.0 ARE
HOH
4.979
3.437
N
OD1
O6A
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 ASN A:105 A:105 56.0 0.35 T -67.3 -19.7 56.0 0.35 0.0 6SA
HOH
4.815
6.815
N
CB
OV6
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 ASN A:105 A:105 47.0 0.294 T -61.7 -17.4 47.0 0.294 0.0 HOH
2.700
ND2
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 ASN A:105 A:105 47.0 0.294 T -67.6 -19.6 47.0 0.294 0.0 QV4
HOH
2.639
2.731
N
O
O3Q
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 ASN A:105 A:105 56.0 0.35 T -70.2 -24.5 56.0 0.35 0.0 HOH
2.613
O
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 ASN A:105 A:105 55.0 0.344 T -71.6 -25.4 55.0 0.344 0.0 ARE
HOH
5.130
3.220
N
OD1
O6A
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 ASN A:105 A:105 49.0 0.306 T -65.2 -16.9 49.0 0.306 0.0 HOH
2.683
O
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 ASN A:105 A:105 50.0 0.312 T -70.1 -17.8 50.0 0.312 0.0 BGC
B8D
HOH
9.211
5.023
2.791
N
N
O
C6
O6
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 ASN A:105 A:105 48.0 0.3 T -65.9 -19.5 48.0 0.3 0.0 HOH
2.826
O
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 ASN A:105 A:105 49.0 0.306 T -66.2 -20.8 49.0 0.306 0.0 BGC
HOH
9.308
3.142
N
OD1
C6
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 ASN A:105 A:105 54.0 0.338 S -60.2 -16.0 54.0 0.338 0.0 HOH
2.658
ND2
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 ASN A:105 A:105 52.0 0.325 T -63.1 -22.0 52.0 0.325 0.0 MYC
HOH
8.709
2.440
N
O
O30
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 ASN A:105 A:105 49.0 0.306 T -64.3 -21.4 49.0 0.306 0.0 HOH
2.741
OD1
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 ASN A:105 A:105 46.0 0.287 T -67.6 -19.5 46.0 0.287 0.0 HOH
2.216
HD21
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 ASN A:105 A:105 47.0 0.294 T -67.8 -17.9 47.0 0.294 0.0 5J7
HOH
9.000
2.860
H
O
H23
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 ASN A:105 A:105 47.0 0.294 T -66.2 -19.2 47.0 0.294 0.0 5QP
HOH
8.351
2.179
H
HD21
H62
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 ASN A:105 A:105 51.0 0.319 T -66.3 -17.6 51.0 0.319 0.0 HOH
3.011
N
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 ASN A:105 A:105 45.0 0.281 T -67.1 -20.5 45.0 0.281 0.0 HOH
2.135
HD21
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 ASN A:105 A:105 44.0 0.275 T -67.8 -31.1 44.0 0.275 0.0 HOH
6.248
O
O
ASN B:105 B:105 46.0 0.287 T -67.7 -31.4 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 ASN A:105 A:105 48.0 0.3 T -66.7 -20.0 48.0 0.3 0.0 ZXU
MPD
HOH
4.979
2.663
2.188
H
HD22
HD21
HH
H12
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 ASN A:105 A:105 45.0 0.281 T -65.4 -22.8 45.0 0.281 0.0 ZXY
HOH
9.051
2.123
H
HD21
HO17
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 ASN A:105 A:105 48.0 0.3 T -67.0 -12.7 48.0 0.3 0.0 GLC
GLC
HOH
9.163
5.158
2.833
N
N
O
C6
O6
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 ASN A:105 A:105 45.0 0.281 T -67.5 -15.8 45.0 0.281 0.0 GLC
G6D
ACI
HOH
9.134
5.518
3.969
2.767
N
N
ND2
O
C6
C6
O4
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 ASN A:105 A:105 46.0 0.287 T -66.5 -14.5 46.0 0.287 0.0 GLC
G6D
HSD
HOH
9.174
5.836
4.635
3.596
N
N
ND2
OD1
C6
C6
O3
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 ASN A:105 A:105 48.0 0.3 T -72.3 -14.4 48.0 0.3 0.0 GLC
G6D
HSD
HOH
9.164
5.629
4.511
2.677
N
N
ND2
O
C6
C6
O2
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 ASN A:105 A:105 45.0 0.281 T -68.0 -18.1 45.0 0.281 0.0 HOH
2.730
ND2
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 ASN A:105 A:105 48.0 0.3 T -67.6 -19.2 48.0 0.3 0.0 HOH
3.257
N
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 ASN A:105 A:105 52.0 0.325 T -65.2 -21.0 52.0 0.325 0.0 AAO
HOH
4.909
3.321
N
ND2
O6A
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 ASN A:105 A:105 54.0 0.338 T -69.1 -24.4 54.0 0.338 0.0 HOH
2.925
OD1
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 ASN A:105 A:105 56.0 0.35 T -70.0 -20.8 56.0 0.35 0.0 ARE
HOH
4.859
2.853
N
OD1
O6A
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 ASN A:105 A:105 55.0 0.344 T -67.1 -20.4 55.0 0.344 0.0 HOH
2.721
OD1
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 ASN A:105 A:105 48.0 0.3 T -64.0 -19.5 48.0 0.3 0.0 HOH
2.880
O
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 ASN A:105 A:105 59.0 0.369 T -68.6 -22.1 59.0 0.369 0.0 ARE
HOH
5.002
2.488
N
OD1
O6A
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 ASN A:105 A:105 51.0 0.319 T -68.3 -19.8 51.0 0.319 0.0 HOH
2.774
ND2
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 ASN A:105 A:105 53.0 0.331 T -71.6 -15.0 53.0 0.331 0.0 GLC
GLC
HOH
7.973
4.594
2.512
H
H
HD21
H62
H62
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 ASN A:105 A:105 46.0 0.287 T -69.2 -19.1 46.0 0.287 0.0 HOH
6.666
CB
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ASN A:105 A:105 50.0 0.312 T -64.7 -19.4 50.0 0.312 0.0 HOH
3.417
N
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ASN A:105 A:105 50.0 0.312 T -62.7 -15.2 50.0 0.312 0.0 GLC
GLC
HOH
9.196
5.152
3.735
N
N
N
C6
O6
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 ASN A:105 A:105 50.0 0.312 T -63.2 -15.5 50.0 0.312 0.0 GLC
GLC
GLC
GLC
HOH
8.702
9.203
5.459
3.928
7.760
C
N
N
ND2
ND2
O1
C6
O6
O4
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 ASN A:105 A:105 52.0 0.325 T -64.8 -19.3 52.0 0.325 0.0 HOH
2.953
OD1
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 ASN A:105 A:105 42.0 0.263 T -59.5 -23.3 42.0 0.263 0.0 HOH
6.681
CB
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 ASN A:105 A:105 53.0 0.331 T -66.9 -18.7 53.0 0.331 0.0 HOH
3.367
N
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 ASN A:105 A:105 48.0 0.3 T -63.6 -19.4 48.0 0.3 0.0 HOH
4.262
O
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 ASN A:105 A:105 57.0 0.356 T -60.2 -20.7 57.0 0.356 0.0 GLC
AGL
HMC
HOH
9.268
5.678
2.822
2.985
N
N
OD1
O
C6
C6
O7
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 ASN A:105 A:105 51.0 0.319 T -77.2 -10.0 51.0 0.319 0.0 HOH
6.497
CB
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 ASN A:105 A:105 49.0 0.306 S -69.8 -28.0 49.0 0.306 0.0 HOH
6.589
O
O
ASN B:105 B:105 49.0 0.306 S -69.8 -28.0 49.0 0.306 0.0 HOH
6.590
O
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 ASN A:105 X:105 51.0 0.319 T -67.2 -15.8 51.0 0.319 0.0 GLC
HOH
9.147
2.836
N
OD1
C6
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 ASN A:105 A:105 50.0 0.312 T -66.7 -18.6 50.0 0.312 0.0 HOH
2.572
ND2
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 ASN A:105 X:105 47.0 0.294 T -63.6 -23.3 47.0 0.294 0.0 HOH
2.692
O
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 ASN A:105 A:105 49.0 0.306 T -61.4 -17.6 49.0 0.306 0.0 HOH
2.730
O
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 ASN A:105 A:105 45.0 0.281 T -61.0 -20.3 45.0 0.281 0.0 GLC
AGL
HOH
9.397
5.799
4.710
N
N
O
C6
C6
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 ASN A:105 X:105 52.0 0.325 T -66.0 -18.8 52.0 0.325 0.0 GLC
AGL
HOH
9.515
5.751
2.599
N
N
O
C6
C6
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 ASN A:105 A:105 51.0 0.319 T -68.3 -15.5 51.0 0.319 0.0 HOH
2.907
ND2
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 ASN A:105 A:105 45.0 0.281 T -64.5 -20.9 45.0 0.281 0.0 GLC
AGL
HMC
HOH
9.284
5.817
3.259
2.641
N
N
OD1
O
C6
C6
O7
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 ASN A:105 A:105 46.0 0.287 T -65.9 -19.9 46.0 0.287 0.0 GLC
HOH
9.371
2.705
N
O
C6
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 SER A:105 A:105 42.0 0.365 T -60.7 -28.7 26.0 0.226 0.139 H:None:0.139
HOH
2.601
OG
O
SER B:105 B:105 43.0 0.374 T -62.0 -21.2 NA NA NA
SER C:105 C:105 44.0 0.383 T -59.8 -28.8 NA NA NA
SER D:105 D:105 44.0 0.383 T -61.3 -30.4 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 SER A:105 A:105 28.0 0.243 T -60.8 -24.5 28.0 0.243 0.0 HOH
3.813
O
O
SER C:105 C:105 35.0 0.304 T -58.2 -23.9 NA NA NA
SER E:105 E:105 36.0 0.313 T -61.0 -19.8 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 SER A:105 A:105 37.0 0.322 T -61.3 -23.2 37.0 0.322 0.0 HOH
3.596
N
O
SER B:105 B:105 36.0 0.313 T -64.5 -19.7 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 SER A:105 A:105 35.0 0.304 T -62.6 -20.0 35.0 0.304 0.0 HOH
2.440
H
H2
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 SER A:105 A:105 31.0 0.27 T -66.3 -15.8 31.0 0.27 0.0 GLC
GLC
HOH
9.285
5.342
3.570
N
N
N
C6
O6
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 SER A:105 A:105 31.0 0.27 T -61.9 -23.4 31.0 0.27 0.0 NPO
HOH
8.942
3.495
N
OG
OH
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 SER A:105 A:105 34.0 0.296 T -63.0 -21.1 34.0 0.296 0.0 GLC
GLC
GLC
GLC
GLC
GLC
HOH
8.266
8.400
5.618
5.259
4.911
3.161
2.447
C
H
H
OG
HG
H
HB2
O1
H61
H62
H61
O4
HO6
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 SER A:105 A:105 35.0 0.304 T -63.8 -22.5 35.0 0.304 0.0 GLC
GLC
GLC
GLC
GLC
GLC
HOH
9.429
6.123
7.971
6.228
5.698
8.843
2.568
C
C
O
H
OG
HG
O
O4
H2
H1
HO6
H61
HO6
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 SER A:105 A:105 34.0 0.296 T -69.2 -15.4 34.0 0.296 0.0 GLC
GLC
HOH
9.163
5.308
2.590
N
N
OG
C6
O6
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 SER A:105 A:105 33.0 0.287 T -60.9 -24.5 33.0 0.287 0.0 MA3
MA2
HG
HOH
8.979
5.342
7.327
3.475
N
N
N
N
C6
O6
HG
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 SER A:105 A:105 33.0 0.287 T -60.5 -23.4 33.0 0.287 0.0 GLC
AC1
HOH
9.233
3.259
3.288
N
OG
O
C6
O6B
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 SER A:105 A:105 33.0 0.287 T -65.1 -19.2 33.0 0.287 0.0 GLC
AC1
EDO
HOH
9.272
3.532
9.279
2.421
N
N
C
OG
C6
O6B
O2
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 SER A:105 A:105 33.0 0.287 T -64.8 -17.4 33.0 0.287 0.0 GLC
GLC
EDO
HOH
9.308
5.328
6.326
2.689
N
N
N
O
C6
O6
C2
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 SER A:105 P:105 48.0 0.417 S -76.6 -18.6 48.0 0.417 0.0 HOH
4.080
N
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 SER A:105 A:105 32.0 0.278 T -63.7 -18.0 32.0 0.278 0.0 HOH
2.664
OG
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 SER A:105 A:105 33.0 0.287 T -58.1 -23.5 33.0 0.287 0.0 GLC
AGL
HOH
9.326
5.747
2.920
N
N
O
C6
C6
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 SER A:105 A:105 33.0 0.287 T -64.9 -19.7 33.0 0.287 0.0 HOH
4.817
OG
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 ASN A:120 A:120 55.0 0.344 T -57.2 -25.7
af-p19961-f1 1 P19961 98.83 0.0 ASN A:120 A:120 42.0 0.263 T -59.1 -25.5
af-p0dte7-f1 1 P0DTE7 96.87 0.0 ASN A:120 A:120 43.0 0.269 T -62.0 -24.4
af-p0dte8-f1 1 P0DTE8 96.87 0.0 ASN A:120 A:120 43.0 0.269 T -60.4 -23.9
af-p0dub6-f1 1 P0DUB6 96.87 0.0 ASN A:120 A:120 44.0 0.275 T -60.2 -24.4