Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104161586 . T A CCDS783.1:NM_000699.2:c.369agT>agA_NP_000690.1:p.123S>R Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 SER A:108 A:108 103.0 0.896 -71.9 140.7 103.0 0.896 0.0 HOH
2.670
O
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 SER A:108 A:108 100.0 0.87 -74.0 140.2 100.0 0.87 0.0 HOH
3.076
O
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 SER A:108 A:108 102.0 0.887 -69.3 139.3 102.0 0.887 0.0 HOH
3.218
O
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 SER A:108 A:108 103.0 0.896 -76.0 140.9 103.0 0.896 0.0 HOH
2.935
O
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 SER A:108 A:108 99.0 0.861 -65.6 136.6 99.0 0.861 0.0 HOH
3.138
O
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 SER A:108 A:108 99.0 0.861 -69.7 146.5 99.0 0.861 0.0 LAG
HOH
8.380
3.121
N
O
OD6
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 SER A:108 A:108 100.0 0.87 -65.4 142.2 100.0 0.87 0.0 LM2
HOH
8.461
2.855
N
O
OD6
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:108 A:108 101.0 0.878 -65.5 137.3 101.0 0.878 0.0 HOH
2.877
N
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:108 A:108 99.0 0.861 -65.9 137.8 99.0 0.861 0.0 HOH
3.765
CA
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:108 A:108 102.0 0.887 -67.6 138.7 102.0 0.887 0.0 ARE
HOH
9.849
3.778
N
CA
C6A
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:108 A:108 98.0 0.852 -77.3 141.1 98.0 0.852 0.0 6SA
HOH
9.737
3.261
N
CA
OV6
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:108 A:108 99.0 0.861 -56.3 141.8 99.0 0.861 0.0 HOH
3.192
O
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:108 A:108 100.0 0.87 -66.7 140.2 100.0 0.87 0.0 QV4
HOH
5.724
2.722
N
O
O4Q
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:108 A:108 98.0 0.852 -75.4 138.2 98.0 0.852 0.0 HOH
2.992
O
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:108 A:108 101.0 0.878 -64.9 143.7 101.0 0.878 0.0 ARE
HOH
9.979
3.053
N
OG
O6A
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:108 A:108 99.0 0.861 -66.8 140.7 99.0 0.861 0.0 HOH
2.905
N
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 SER A:108 A:108 104.0 0.904 -70.4 139.2 104.0 0.904 0.0 B8D
HOH
8.676
3.016
N
O
O6
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 SER A:108 A:108 103.0 0.896 -64.9 140.0 103.0 0.896 0.0 HOH
2.978
N
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 SER A:108 A:108 102.0 0.887 -64.8 138.8 102.0 0.887 0.0 HOH
2.906
O
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 SER A:108 A:108 68.0 0.591 T -92.7 8.4 68.0 0.591 0.0 HOH
2.743
OG
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 SER A:108 A:108 100.0 0.87 -65.7 141.3 100.0 0.87 0.0 HOH
2.872
O
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 SER A:108 A:108 103.0 0.896 -65.5 140.3 103.0 0.896 0.0 HOH
2.868
O
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 SER A:108 A:108 101.0 0.878 -68.0 140.9 101.0 0.878 0.0 HOH
2.074
H
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 SER A:108 A:108 101.0 0.878 -68.4 141.3 101.0 0.878 0.0 HOH
2.129
H
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 SER A:108 A:108 102.0 0.887 -68.1 142.1 102.0 0.887 0.0 HOH
2.098
H
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 SER A:108 A:108 102.0 0.887 -70.0 133.4 102.0 0.887 0.0 HOH
2.661
OG
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 SER A:108 A:108 102.0 0.887 -67.6 140.4 102.0 0.887 0.0 HOH
2.074
H
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 SER A:108 A:108 102.0 0.887 -64.3 134.1 102.0 0.887 0.0 HOH
3.646
C
O
SER B:108 B:108 100.0 0.87 -64.8 133.7 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 SER A:108 A:108 102.0 0.887 -67.8 142.0 102.0 0.887 0.0 MPD
HOH
5.855
2.139
H
H
H52
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 SER A:108 A:108 102.0 0.887 -68.1 140.8 102.0 0.887 0.0 HOH
2.102
H
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:108 A:108 103.0 0.896 -66.4 139.2 103.0 0.896 0.0 GLC
HOH
8.952
2.791
N
O
O6
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:108 A:108 103.0 0.896 -64.2 137.4 103.0 0.896 0.0 G6D
ACI
HOH
9.952
8.168
2.892
N
N
O
C6
O6
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:108 A:108 98.0 0.852 -65.8 147.2 98.0 0.852 0.0 HSD
HOH
8.621
3.009
N
N
O1
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:108 A:108 100.0 0.87 -65.5 140.0 100.0 0.87 0.0 HSD
HOH
8.174
2.891
N
O
O1
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 SER A:108 A:108 99.0 0.861 -76.5 146.6 99.0 0.861 0.0 HOH
4.949
N
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:108 A:108 101.0 0.878 -63.2 137.9 101.0 0.878 0.0 HOH
2.840
OG
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:108 A:108 99.0 0.861 -66.8 139.3 99.0 0.861 0.0 AAO
HOH
9.850
3.223
N
O
C6A
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:108 A:108 99.0 0.861 -71.7 143.7 99.0 0.861 0.0 HOH
3.205
O
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:108 A:108 100.0 0.87 -71.6 135.6 100.0 0.87 0.0 ARE
HOH
9.811
3.160
N
N
O6A
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 SER A:108 A:108 97.0 0.843 -73.8 137.1 97.0 0.843 0.0 HOH
3.154
O
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 SER A:108 A:108 101.0 0.878 -63.8 139.9 101.0 0.878 0.0 HOH
2.799
O
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 SER A:108 A:108 98.0 0.852 -75.3 137.5 98.0 0.852 0.0 ARE
HOH
9.963
3.407
N
O
C6A
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 SER A:108 A:108 103.0 0.896 -70.5 136.6 103.0 0.896 0.0 HOH
4.084
OG
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 SER A:108 A:108 102.0 0.887 -68.3 143.4 102.0 0.887 0.0 GLC
GLC
HOH
8.286
8.007
2.742
H
HG
O
O6
HO2
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 SER A:108 A:108 103.0 0.896 -69.7 141.9 103.0 0.896 0.0 HOH
3.112
O
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 SER A:108 A:108 99.0 0.861 -78.9 136.4 99.0 0.861 0.0 HOH
7.054
CB
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 SER A:108 A:108 100.0 0.87 -73.8 146.4 100.0 0.87 0.0 HOH
7.127
C
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 SER A:108 A:108 101.0 0.878 -69.1 140.5 101.0 0.878 0.0 GLC
GLC
GLC
GLC
HOH
5.641
9.249
9.020
8.374
3.486
OG
OG
N
N
O
O2
O2
O6
O6
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 SER A:108 A:108 99.0 0.861 -73.4 138.3 99.0 0.861 0.0 HOH
5.520
N
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 SER A:108 A:108 102.0 0.887 -68.7 144.3 102.0 0.887 0.0 HOH
3.386
O
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 SER A:108 A:108 100.0 0.87 -70.8 136.1 100.0 0.87 0.0 HOH
3.470
CA
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 SER A:108 A:108 100.0 0.87 -66.8 137.9 100.0 0.87 0.0 HOH
2.849
N
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 SER A:108 A:108 101.0 0.878 -69.8 142.4 101.0 0.878 0.0 HOH
2.790
O
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 SER A:108 A:108 91.0 0.791 -95.9 138.1 91.0 0.791 0.0
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 SER A:108 A:108 104.0 0.904 -74.7 141.1 104.0 0.904 0.0 HOH
3.070
O
O
SER B:108 B:108 102.0 0.887 -74.7 141.1 102.0 0.887 0.0 HOH
3.070
O
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 SER A:108 X:108 101.0 0.878 -66.6 143.5 101.0 0.878 0.0 HOH
2.855
O
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 SER A:108 A:108 100.0 0.87 -67.1 139.9 100.0 0.87 0.0 HOH
2.654
O
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 SER A:108 X:108 100.0 0.87 -68.4 142.3 100.0 0.87 0.0 HOH
2.779
N
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 SER A:108 A:108 99.0 0.861 -69.0 147.2 99.0 0.861 0.0 HOH
2.801
N
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 SER A:108 A:108 104.0 0.904 -71.6 151.2 104.0 0.904 0.0 HOH
2.977
N
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 SER A:108 X:108 99.0 0.861 -70.9 143.3 99.0 0.861 0.0 HOH
2.901
O
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 SER A:108 A:108 100.0 0.87 -64.8 145.2 100.0 0.87 0.0 HOH
2.858
O
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 SER A:108 A:108 101.0 0.878 -66.3 139.4 101.0 0.878 0.0 HMC
HOH
9.993
2.858
N
O
O7
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 SER A:108 A:108 101.0 0.878 -69.1 142.3 101.0 0.878 0.0 HOH
2.929
O
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 ALA A:108 A:108 83.0 0.722 -71.8 145.0 79.0 0.687 0.035 H:None:0.035
HOH
2.942
N
O
ALA B:108 B:108 84.0 0.73 -69.1 145.4 NA NA NA
ALA C:108 C:108 81.0 0.704 -73.2 139.5 NA NA NA
ALA D:108 D:108 83.0 0.722 -73.5 150.2 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 ALA A:108 A:108 88.0 0.765 -75.8 153.2 88.0 0.765 0.0 HOH
2.283
CB
O
ALA C:108 C:108 94.0 0.817 -68.9 146.0 NA NA NA
ALA E:108 E:108 89.0 0.774 -58.5 147.2 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 ALA A:108 A:108 87.0 0.757 -72.9 148.1 87.0 0.757 0.0 HOH
3.065
O
O
ALA B:108 B:108 89.0 0.774 -76.3 142.3 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 ALA A:108 A:108 87.0 0.757 -76.5 136.6 87.0 0.757 0.0 HOH
2.049
O
H1
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 ALA A:108 A:108 86.0 0.748 -80.2 145.4 86.0 0.748 0.0 HOH
3.289
O
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 ALA A:108 A:108 86.0 0.748 -76.5 150.1 86.0 0.748 0.0 HOH
7.574
N
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 ALA A:108 A:108 87.0 0.757 -81.2 151.0 87.0 0.757 0.0 GLC
GLC
GLC
GLC
GLC
HOH
2.639
6.449
9.503
9.991
5.762
2.135
HB1
HB3
H
H
H
H
H1
HO2
O6
H62
H62
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 ALA A:108 A:108 87.0 0.757 -75.7 148.9 87.0 0.757 0.0 GLC
GLC
GLC
GLC
GLC
HOH
6.192
8.512
4.376
2.714
9.312
2.396
HB3
H
H
HB1
H
H
HO2
O4
O3
H2
HO6
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 ALA A:108 A:108 83.0 0.722 -76.7 152.6 83.0 0.722 0.0 GLC
HOH
8.878
3.263
N
O
O6
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 ALA A:108 A:108 89.0 0.774 -76.2 152.7 89.0 0.774 0.0 MA2
HG
HOH
8.212
5.313
4.632
N
O
N
O6
HG
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 ALA A:108 A:108 84.0 0.73 -85.9 145.2 84.0 0.73 0.0 AC1
HOH
8.541
3.295
N
O
O6B
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 ALA A:108 A:108 84.0 0.73 -73.5 155.3 84.0 0.73 0.0 AC1
EDO
HOH
7.279
2.662
2.961
N
O
N
O6B
O2
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 ALA A:108 A:108 83.0 0.722 -78.8 154.8 83.0 0.722 0.0 GLC
EDO
HOH
8.794
6.002
2.783
N
N
N
O6
C2
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 ALA A:108 P:108 63.0 0.548 -56.0 164.6 63.0 0.548 0.0 HOH
3.703
C
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 ALA A:108 A:108 86.0 0.748 -84.9 153.4 86.0 0.748 0.0 HOH
3.595
O
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 ALA A:108 A:108 86.0 0.748 -84.7 152.5 86.0 0.748 0.0 HOH
3.489
O
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 ALA A:108 A:108 89.0 0.774 -73.2 155.9 89.0 0.774 0.0 HOH
3.595
CB
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 SER A:123 A:123 100.0 0.87 -64.7 141.0
af-p19961-f1 1 P19961 98.83 0.0 SER A:123 A:123 102.0 0.887 -61.3 139.1
af-p0dte7-f1 1 P0DTE7 96.87 0.0 SER A:123 A:123 101.0 0.878 -62.4 138.6
af-p0dte8-f1 1 P0DTE8 96.87 0.0 SER A:123 A:123 102.0 0.887 -62.4 138.6
af-p0dub6-f1 1 P0DUB6 96.87 0.0 SER A:123 A:123 102.0 0.887 -67.0 140.5