Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104161630 . G A CCDS783.1:NM_000699.2:c.413aGt>aAt_NP_000690.1:p.138S>N Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 SER A:123 A:123 52.0 0.452 G -98.7 4.4 52.0 0.452 0.0 HOH
6.802
N
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 SER A:123 A:123 67.0 0.583 T -95.9 8.6 67.0 0.583 0.0 HOH
2.849
O
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 SER A:123 A:123 64.0 0.557 T -98.8 9.5 64.0 0.557 0.0 HOH
2.931
O
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 SER A:123 A:123 52.0 0.452 T -93.5 -1.5 52.0 0.452 0.0 HOH
2.734
O
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 SER A:123 A:123 72.0 0.626 T -95.1 14.2 72.0 0.626 0.0 HOH
2.766
O
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 SER A:123 A:123 55.0 0.478 T -97.8 4.2 55.0 0.478 0.0 HOH
2.675
O
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 SER A:123 A:123 66.0 0.574 T -98.8 11.1 66.0 0.574 0.0 HOH
5.137
N
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:123 A:123 53.0 0.461 G -100.7 12.3 53.0 0.461 0.0 HOH
2.649
O
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:123 A:123 61.0 0.53 G -102.9 13.6 61.0 0.53 0.0 HOH
6.677
N
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:123 A:123 67.0 0.583 G -101.7 6.6 67.0 0.583 0.0 HOH
2.641
O
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 SER A:123 A:123 72.0 0.626 T -94.4 15.6 72.0 0.626 0.0 HOH
7.181
N
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:123 A:123 53.0 0.461 T -92.3 5.8 53.0 0.461 0.0 HOH
2.720
O
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:123 A:123 51.0 0.443 T -93.1 1.9 51.0 0.443 0.0 HOH
2.747
O
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:123 A:123 57.0 0.496 T -95.2 8.8 57.0 0.496 0.0 HOH
2.674
O
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:123 A:123 56.0 0.487 T -100.0 8.9 56.0 0.487 0.0 HOH
2.657
O
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 SER A:123 A:123 50.0 0.435 G -94.3 2.2 50.0 0.435 0.0 HOH
2.712
O
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 SER A:123 A:123 61.0 0.53 G -94.7 8.7 61.0 0.53 0.0 HOH
2.599
O
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 SER A:123 A:123 60.0 0.522 G -97.1 6.7 60.0 0.522 0.0 HOH
2.849
O
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 SER A:123 A:123 66.0 0.574 G -96.6 8.1 66.0 0.574 0.0 HOH
2.820
O
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 SER A:123 A:123 65.0 0.565 T -97.3 8.5 65.0 0.565 0.0 HOH
2.709
O
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 SER A:123 A:123 64.0 0.557 T -97.2 11.8 64.0 0.557 0.0 HOH
2.609
O
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 SER A:123 A:123 65.0 0.565 G -95.9 5.4 65.0 0.565 0.0 HOH
2.815
O
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 SER A:123 A:123 62.0 0.539 G -98.3 4.4 62.0 0.539 0.0 HOH
2.753
O
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 SER A:123 A:123 63.0 0.548 G -97.5 3.1 63.0 0.548 0.0 HOH
2.734
HG
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 SER A:123 A:123 61.0 0.53 G -97.6 4.3 61.0 0.53 0.0 HOH
2.518
HG
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 SER A:123 A:123 51.0 0.443 T -96.3 8.0 51.0 0.443 0.0 HOH
5.223
N
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 SER A:123 A:123 63.0 0.548 G -96.9 2.7 63.0 0.548 0.0 HOH
2.578
HG
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 SER A:123 A:123 62.0 0.539 G -99.5 7.4 62.0 0.539 0.0 HOH
6.432
N
O
SER B:123 B:123 54.0 0.47 T -101.2 7.7 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 SER A:123 A:123 63.0 0.548 G -97.8 5.4 63.0 0.548 0.0 HOH
2.602
HG
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 SER A:123 A:123 63.0 0.548 G -96.3 4.2 63.0 0.548 0.0 HOH
2.533
HG
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:123 A:123 62.0 0.539 G -97.2 8.2 62.0 0.539 0.0 GLC
GLC
HOH
8.944
7.870
2.543
O
O
O
O3
O3
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:123 A:123 63.0 0.548 G -99.6 4.9 63.0 0.548 0.0 GLC
GLC
HOH
8.914
7.843
2.672
O
O
O
O3
O3
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:123 A:123 57.0 0.496 T -102.0 11.0 57.0 0.496 0.0 GLC
GLC
HOH
8.766
7.674
2.663
O
O
O
O3
O3
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 SER A:123 A:123 64.0 0.557 G -98.6 5.4 64.0 0.557 0.0 GLC
GLC
HOH
8.937
7.863
2.671
O
O
O
O3
O3
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 SER A:123 A:123 59.0 0.513 G -110.7 17.0 59.0 0.513 0.0 HOH
4.232
OG
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:123 A:123 68.0 0.591 T -100.0 12.6 68.0 0.591 0.0 HOH
2.878
O
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:123 A:123 66.0 0.574 T -98.1 13.1 66.0 0.574 0.0 HOH
2.663
O
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:123 A:123 64.0 0.557 G -100.0 7.1 64.0 0.557 0.0 HOH
2.705
OG
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 SER A:123 A:123 63.0 0.548 G -98.6 8.5 63.0 0.548 0.0 HOH
2.640
O
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 SER A:123 A:123 60.0 0.522 T -94.4 12.7 60.0 0.522 0.0 HOH
2.605
O
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 SER A:123 A:123 48.0 0.417 T -91.8 2.0 48.0 0.417 0.0 HOH
2.739
O
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 SER A:123 A:123 60.0 0.522 T -92.1 9.5 60.0 0.522 0.0 HOH
2.671
O
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 SER A:123 A:123 65.0 0.565 G -98.3 8.5 65.0 0.565 0.0 HOH
2.822
O
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 SER A:123 A:123 62.0 0.539 G -100.1 4.8 62.0 0.539 0.0 HOH
2.647
O
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 SER A:123 A:123 61.0 0.53 G -105.6 9.9 61.0 0.53 0.0 HOH
2.848
O
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 SER A:123 A:123 57.0 0.496 G -98.9 11.0 57.0 0.496 0.0 HOH
9.649
O
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 SER A:123 A:123 63.0 0.548 G -101.3 9.2 63.0 0.548 0.0 HOH
4.623
O
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 SER A:123 A:123 51.0 0.443 T -97.3 6.0 51.0 0.443 0.0 GLC
GLC
GLC
HOH
9.035
8.143
9.684
7.545
O
O
O
N
O3
O3
O2
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 SER A:123 A:123 64.0 0.557 T -97.5 7.8 64.0 0.557 0.0 HOH
2.726
O
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 SER A:123 A:123 52.0 0.452 T -88.4 -1.7 52.0 0.452 0.0 HOH
9.861
O
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 SER A:123 A:123 56.0 0.487 G -101.8 16.8 56.0 0.487 0.0 HOH
7.007
O
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 SER A:123 A:123 60.0 0.522 T -96.3 8.9 60.0 0.522 0.0 HOH
3.534
O
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 SER A:123 A:123 52.0 0.452 T -98.4 5.2 52.0 0.452 0.0 HOH
2.765
O
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 SER A:123 A:123 54.0 0.47 T -103.8 -4.6 54.0 0.47 0.0 HOH
6.193
O
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 SER A:123 A:123 57.0 0.496 T -97.9 -1.5 57.0 0.496 0.0 HOH
3.507
N
O
SER B:123 B:123 57.0 0.496 T -97.9 -1.5 57.0 0.496 0.0 HOH
3.508
N
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 SER A:123 X:123 62.0 0.539 T -96.2 5.2 62.0 0.539 0.0 HOH
2.751
O
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 SER A:123 A:123 61.0 0.53 T -97.8 6.4 61.0 0.53 0.0 HOH
2.883
O
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 SER A:123 X:123 63.0 0.548 T -102.6 8.9 63.0 0.548 0.0 HOH
5.338
N
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 SER A:123 A:123 51.0 0.443 T -97.1 3.2 51.0 0.443 0.0 HOH
5.299
N
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 SER A:123 A:123 59.0 0.513 T -96.8 3.4 59.0 0.513 0.0 HOH
5.458
N
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 SER A:123 X:123 54.0 0.47 G -101.2 5.3 54.0 0.47 0.0 HOH
2.862
O
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 SER A:123 A:123 62.0 0.539 T -97.2 6.1 62.0 0.539 0.0 HOH
2.795
O
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 SER A:123 A:123 65.0 0.565 T -92.6 6.3 65.0 0.565 0.0 HOH
5.221
N
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 SER A:123 A:123 50.0 0.435 G -95.2 3.7 50.0 0.435 0.0 HOH
2.861
O
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 SER A:123 A:123 70.0 0.609 G -112.1 19.1 70.0 0.609 0.0 HOH
2.843
O
O
SER B:123 B:123 48.0 0.417 G -97.2 7.1 NA NA NA
SER C:123 C:123 65.0 0.565 G -97.6 11.2 NA NA NA
SER D:123 D:123 69.0 0.6 G -108.2 23.7 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 SER A:123 A:123 61.0 0.53 G -106.4 12.5 61.0 0.53 0.0 HOH
2.652
CB
O
SER C:123 C:123 69.0 0.6 G -111.5 23.9 NA NA NA
SER E:123 E:123 61.0 0.53 T -90.2 3.1 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 SER A:123 A:123 62.0 0.539 G -104.3 19.0 62.0 0.539 0.0 HOH
2.747
O
O
SER B:123 B:123 61.0 0.53 G -93.5 7.8 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 SER A:123 A:123 62.0 0.539 G -102.9 15.1 62.0 0.539 0.0 HOH
1.542
O
H1
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 SER A:123 A:123 61.0 0.53 G -98.3 8.9 61.0 0.53 0.0 HOH
5.111
N
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 ASN A:123 A:123 95.0 0.594 G -98.2 -1.0 95.0 0.594 0.0 HOH
2.940
O
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 ASN A:123 A:123 97.0 0.606 G -94.9 6.2 97.0 0.606 0.0 HOH
2.032
HB3
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 ASN A:123 A:123 100.0 0.625 G -96.8 10.3 100.0 0.625 0.0 GLC
GLC
GLC
HOH
6.692
8.300
8.857
2.846
O
O
O
HA
H61
H62
HO6
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 ASN A:123 A:123 87.0 0.544 G -98.1 8.6 87.0 0.544 0.0 EDO
HOH
9.311
2.891
O
O
O1
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 SER A:123 A:123 75.0 0.652 G -101.0 5.4 75.0 0.652 0.0 HG
HOH
9.222
2.902
N
O
HG
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 SER A:123 A:123 67.0 0.583 G -102.0 9.0 67.0 0.583 0.0 HOH
3.149
O
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 ASN A:123 A:123 108.0 0.675 G -105.6 4.7 108.0 0.675 0.0 HOH
2.297
OD1
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 ASN A:123 A:123 90.0 0.562 G -103.8 11.0 90.0 0.562 0.0 HOH
2.790
O
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 SER A:123 P:123 63.0 0.548 G -92.1 14.5 63.0 0.548 0.0 HOH
4.935
N
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 SER A:123 A:123 67.0 0.583 G -94.7 13.1 67.0 0.583 0.0 HOH
3.354
O
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 SER A:123 A:123 65.0 0.565 G -96.8 12.0 65.0 0.565 0.0 HOH
2.710
O
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 SER A:123 A:123 74.0 0.643 G -99.0 14.1 74.0 0.643 0.0 HOH
2.809
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 SER A:138 A:138 64.0 0.557 T -99.8 5.4
af-p19961-f1 1 P19961 98.83 0.0 SER A:138 A:138 61.0 0.53 G -98.8 6.8
af-p0dte7-f1 1 P0DTE7 96.87 0.0 SER A:138 A:138 65.0 0.565 T -97.6 5.8
af-p0dte8-f1 1 P0DTE8 96.87 0.0 SER A:138 A:138 63.0 0.548 T -97.4 5.7
af-p0dub6-f1 1 P0DUB6 96.87 0.0 SER A:138 A:138 61.0 0.53 G -99.8 5.4