Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104162240 . A C CCDS783.1:NM_000699.2:c.578aAg>aCg_NP_000690.1:p.193K>T Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 LYS A:178 A:178 35.0 0.175 H -67.7 -39.6 35.0 0.175 0.0 HOH
6.508
NZ
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 LYS A:178 A:178 34.0 0.17 H -67.8 -38.1 34.0 0.17 0.0 HOH
2.740
O
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 LYS A:178 A:178 31.0 0.155 H -68.1 -36.1 31.0 0.155 0.0 HOH
2.720
O
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 LYS A:178 A:178 33.0 0.165 H -64.8 -44.5 33.0 0.165 0.0 HOH
2.710
O
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 LYS A:178 A:178 34.0 0.17 H -65.8 -37.0 34.0 0.17 0.0 HOH
2.632
O
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 LYS A:178 A:178 39.0 0.195 H -71.2 -33.5 39.0 0.195 0.0 HOH
2.698
O
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 LYS A:178 A:178 33.0 0.165 H -66.0 -36.1 33.0 0.165 0.0 HOH
2.648
O
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:178 A:178 31.0 0.155 H -69.9 -34.0 31.0 0.155 0.0 HOH
3.759
CE
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:178 A:178 31.0 0.155 H -69.7 -34.9 31.0 0.155 0.0 HOH
2.763
O
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:178 A:178 32.0 0.16 H -68.7 -34.9 32.0 0.16 0.0 HOH
2.544
O
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:178 A:178 37.0 0.185 H -69.8 -27.4 37.0 0.185 0.0 HOH
2.642
O
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:178 A:178 30.0 0.15 H -67.5 -30.3 30.0 0.15 0.0 HOH
2.556
O
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:178 A:178 28.0 0.14 H -64.7 -41.8 28.0 0.14 0.0 HOH
2.667
O
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:178 A:178 33.0 0.165 H -69.6 -33.1 33.0 0.165 0.0 HOH
2.711
O
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:178 A:178 34.0 0.17 H -64.8 -31.3 34.0 0.17 0.0 HOH
2.639
NZ
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:178 A:178 34.0 0.17 H -65.5 -37.9 34.0 0.17 0.0 HOH
2.750
O
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 LYS A:178 A:178 30.0 0.15 H -66.4 -35.6 30.0 0.15 0.0 HOH
2.758
O
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 LYS A:178 A:178 31.0 0.155 H -67.5 -37.4 31.0 0.155 0.0 HOH
2.760
O
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 LYS A:178 A:178 32.0 0.16 H -65.9 -38.6 32.0 0.16 0.0 HOH
2.706
O
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 LYS A:178 A:178 32.0 0.16 H -68.5 -37.4 32.0 0.16 0.0 HOH
2.901
O
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 LYS A:178 A:178 34.0 0.17 H -69.9 -36.5 34.0 0.17 0.0 HOH
2.699
O
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 LYS A:178 A:178 31.0 0.155 H -67.7 -38.9 31.0 0.155 0.0 HOH
2.731
O
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 LYS A:178 A:178 31.0 0.155 H -68.8 -38.8 31.0 0.155 0.0 HOH
1.963
HZ3
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 LYS A:178 A:178 31.0 0.155 H -65.1 -39.3 31.0 0.155 0.0 HOH
2.866
O
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 LYS A:178 A:178 29.0 0.145 H -69.1 -37.0 29.0 0.145 0.0 HOH
1.951
HZ3
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 LYS A:178 A:178 34.0 0.17 H -64.3 -41.7 34.0 0.17 0.0 HOH
3.041
O
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 LYS A:178 A:178 30.0 0.15 H -66.6 -39.2 30.0 0.15 0.0 HOH
2.003
HZ3
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 LYS A:178 A:178 43.0 0.215 H -61.0 -43.5 43.0 0.215 0.0 HOH
5.868
NZ
O
LYS B:178 B:178 30.0 0.15 H -61.0 -43.1 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 LYS A:178 A:178 30.0 0.15 H -68.8 -39.0 30.0 0.15 0.0 HOH
2.816
O
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 LYS A:178 A:178 29.0 0.145 H -67.6 -38.7 29.0 0.145 0.0 HOH
1.933
HZ3
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:178 A:178 32.0 0.16 H -70.4 -36.8 32.0 0.16 0.0 GLC
GLC
GLC
HOH
7.507
6.792
9.117
2.706
CG
CG
NZ
O
O3
C1
C1
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:178 A:178 31.0 0.155 H -70.8 -38.1 31.0 0.155 0.0 GLC
GLC
GLC
HOH
7.558
6.827
9.204
2.811
CG
CG
CE
NZ
O3
C1
O2
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:178 A:178 29.0 0.145 H -63.4 -40.4 29.0 0.145 0.0 GLC
GLC
GLC
HOH
7.314
6.731
9.320
2.823
CG
CG
NZ
O
O3
C1
C1
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:178 A:178 31.0 0.155 H -67.3 -38.4 31.0 0.155 0.0 GLC
GLC
GLC
HOH
7.544
6.847
9.337
2.563
CG
CG
CE
NZ
O3
C1
O2
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 LYS A:178 A:178 34.0 0.17 H -60.1 -40.8 34.0 0.17 0.0 HOH
2.782
O
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:178 A:178 31.0 0.155 H -68.9 -33.9 31.0 0.155 0.0 HOH
2.627
O
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:178 A:178 32.0 0.16 H -67.7 -34.4 32.0 0.16 0.0 HOH
2.687
O
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:178 A:178 32.0 0.16 H -64.9 -36.9 32.0 0.16 0.0 HOH
2.745
O
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:178 A:178 32.0 0.16 H -64.9 -32.3 32.0 0.16 0.0 HOH
2.690
O
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 LYS A:178 A:178 32.0 0.16 H -67.9 -35.7 32.0 0.16 0.0 HOH
2.583
O
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 LYS A:178 A:178 33.0 0.165 H -68.9 -37.4 33.0 0.165 0.0 HOH
2.769
O
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 LYS A:178 A:178 34.0 0.17 H -60.9 -36.1 34.0 0.17 0.0 HOH
2.579
O
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 LYS A:178 A:178 34.0 0.17 H -65.4 -37.1 34.0 0.17 0.0 HOH
2.558
CB
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 LYS A:178 A:178 33.0 0.165 H -65.9 -38.8 33.0 0.165 0.0 HOH
2.834
O
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 LYS A:178 A:178 36.0 0.18 H -63.3 -36.7 36.0 0.18 0.0 HOH
2.843
O
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 LYS A:178 A:178 35.0 0.175 H -68.2 -36.0 35.0 0.175 0.0 HOH
2.597
O
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 LYS A:178 A:178 31.0 0.155 H -62.8 -43.8 31.0 0.155 0.0 HOH
2.635
O
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 LYS A:178 A:178 37.0 0.185 H -63.3 -39.3 37.0 0.185 0.0 GLC
GLC
GLC
HOH
7.617
6.903
9.158
2.850
CG
CG
NZ
O
O3
C1
C1
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 LYS A:178 A:178 33.0 0.165 H -69.6 -34.5 33.0 0.165 0.0 HOH
2.916
NZ
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 LYS A:178 A:178 33.0 0.165 H -62.2 -42.3 33.0 0.165 0.0 HOH
2.724
O
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 LYS A:178 A:178 32.0 0.16 H -68.1 -35.1 32.0 0.16 0.0 HOH
2.660
O
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 LYS A:178 A:178 29.0 0.145 H -56.9 -40.1 29.0 0.145 0.0 HOH
3.975
CE
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 LYS A:178 A:178 34.0 0.17 H -64.5 -41.8 34.0 0.17 0.0 HOH
2.844
O
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 LYS A:178 A:178 31.0 0.155 H -61.3 -42.1 31.0 0.155 0.0 HOH
2.881
O
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 LYS A:178 A:178 41.0 0.205 H -65.9 -39.5 41.0 0.205 0.0 HOH
4.653
N
O
LYS B:178 B:178 39.0 0.195 H -65.8 -39.5 39.0 0.195 0.0 HOH
4.653
N
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 LYS A:178 X:178 31.0 0.155 H -66.3 -39.6 31.0 0.155 0.0 HOH
2.871
O
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 LYS A:178 A:178 31.0 0.155 H -63.8 -40.2 31.0 0.155 0.0 HOH
2.791
O
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 LYS A:178 X:178 31.0 0.155 H -61.1 -44.9 31.0 0.155 0.0 HOH
2.651
O
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 LYS A:178 A:178 32.0 0.16 H -64.8 -39.8 32.0 0.16 0.0 HOH
2.712
O
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 LYS A:178 A:178 35.0 0.175 H -66.4 -38.8 35.0 0.175 0.0 HOH
2.681
O
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 LYS A:178 X:178 31.0 0.155 H -68.3 -38.3 31.0 0.155 0.0 HOH
2.786
O
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 LYS A:178 A:178 32.0 0.16 H -68.8 -37.5 32.0 0.16 0.0 HOH
2.807
NZ
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 LYS A:178 A:178 36.0 0.18 H -65.6 -38.7 36.0 0.18 0.0 GLC
HOH
6.568
2.692
CE
O
O3
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 LYS A:178 A:178 31.0 0.155 H -64.6 -39.1 31.0 0.155 0.0 HOH
2.837
O
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 MET A:178 A:178 29.0 0.157 H -64.7 -42.2 29.0 0.157 0.0 HOH
2.870
O
O
MET B:178 B:178 26.0 0.141 H -63.3 -41.5 NA NA NA
MET C:178 C:178 31.0 0.168 H -65.5 -42.7 NA NA NA
MET D:178 D:178 25.0 0.135 H -64.0 -43.9 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 MET A:178 A:178 27.0 0.146 H -72.4 -37.7 27.0 0.146 0.0 HOH
2.693
O
O
MET C:178 C:178 27.0 0.146 H -63.7 -45.5 NA NA NA
MET E:178 E:178 29.0 0.157 H -67.7 -47.7 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 MET A:178 A:178 31.0 0.168 H -69.5 -39.7 31.0 0.168 0.0 HOH
2.865
O
O
MET B:178 B:178 37.0 0.2 H -66.6 -39.3 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 MET A:178 A:178 31.0 0.168 H -62.1 -43.5 31.0 0.168 0.0 HOH
2.061
O
H2
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 MET A:178 A:178 36.0 0.195 H -62.7 -40.3 36.0 0.195 0.0 HOH
2.879
O
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 MET A:178 A:178 44.0 0.238 H -65.7 -44.8 44.0 0.238 0.0 HOH
2.892
CE
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 MET A:178 A:178 40.0 0.216 H -62.9 -38.1 40.0 0.216 0.0 HOH
2.161
HE2
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 MET A:178 A:178 35.0 0.189 H -65.8 -40.5 35.0 0.189 0.0 GLC
GLC
GLC
HOH
8.374
5.876
6.653
2.283
HG3
HG3
HG2
HE2
H61
H61
H1
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 MET A:178 A:178 35.0 0.189 H -60.4 -44.3 35.0 0.189 0.0 EDO
HOH
7.732
2.798
CG
O
C1
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 MET A:178 A:178 38.0 0.205 H -61.6 -41.4 38.0 0.205 0.0 HOH
2.657
O
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 MET A:178 A:178 39.0 0.211 H -61.7 -46.0 39.0 0.211 0.0 HOH
2.943
O
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 MET A:178 A:178 32.0 0.173 H -62.1 -44.2 32.0 0.173 0.0 HOH
2.798
O
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 MET A:178 A:178 29.0 0.157 H -62.5 -42.2 29.0 0.157 0.0 HOH
2.738
O
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 MET A:178 P:178 26.0 0.141 H -54.7 -43.2 26.0 0.141 0.0 HOH
3.789
CG
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 MET A:178 A:178 34.0 0.184 H -62.2 -43.5 34.0 0.184 0.0 HOH
2.823
O
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 MET A:178 A:178 31.0 0.168 H -65.3 -43.0 31.0 0.168 0.0 HOH
2.800
O
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 MET A:178 A:178 29.0 0.157 H -63.9 -45.2 29.0 0.157 0.0 HOH
3.348
CE
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 LYS A:193 A:193 35.0 0.175 H -65.6 -40.0
af-p19961-f1 1 P19961 98.83 0.0 LYS A:193 A:193 34.0 0.17 H -66.0 -39.7
af-p0dte7-f1 1 P0DTE7 96.87 0.0 LYS A:193 A:193 33.0 0.165 H -65.8 -39.1
af-p0dte8-f1 1 P0DTE8 96.87 0.0 LYS A:193 A:193 31.0 0.155 H -65.7 -39.1
af-p0dub6-f1 1 P0DUB6 96.87 0.0 LYS A:193 A:193 36.0 0.18 H -65.8 -40.9