Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104163185 . G A CCDS783.1:NM_000699.2:c.757Ggt>Agt_NP_000690.1:p.253G>S Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 GLY A:238 A:238 63.0 0.84 S -62.4 175.9 63.0 0.84 0.0 BGC
HOH
7.292
7.541
O
N
O2
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 GLY A:238 A:238 61.0 0.813 S -80.5 -171.7 61.0 0.813 0.0 HOH
3.280
CA
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 GLY A:238 A:238 52.0 0.693 S 110.4 -15.9 52.0 0.693 0.0 GLC
HOH
7.897
3.393
N
C
O2
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 GLY A:238 A:238 65.0 0.867 T -69.8 -169.9 65.0 0.867 0.0 HOH
2.750
O
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 GLY A:238 A:238 38.0 0.507 S 82.7 166.0 38.0 0.507 0.0 HOH
3.541
CA
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 GLY A:238 A:238 38.0 0.507 S 86.5 162.6 38.0 0.507 0.0 GOX
HOH
8.124
3.400
O
CA
O6
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 GLY A:238 A:238 33.0 0.44 S 84.0 177.1 33.0 0.44 0.0 HOH
3.121
CA
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 GLY A:238 A:238 37.0 0.493 S 91.3 164.9 37.0 0.493 0.0 GLC
HOH
6.974
3.414
O
CA
O2
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 GLY A:238 A:238 42.0 0.56 S 86.4 168.8 42.0 0.56 0.0 BGC
GLC
HOH
3.471
6.991
3.365
O
O
O
O3
O2
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 GLY A:238 A:238 50.0 0.667 S 104.9 -25.9 50.0 0.667 0.0 ARE
HOH
7.800
3.373
N
C
O2G
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 GLY A:238 A:238 45.0 0.6 S 62.6 152.5 45.0 0.6 0.0 6SA
HOH
6.757
5.402
O
N
OW4
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 GLY A:238 A:238 34.0 0.453 S 91.8 172.6 34.0 0.453 0.0 HOH
3.421
C
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 GLY A:238 A:238 59.0 0.787 S -57.2 -126.7 59.0 0.787 0.0 HOH
2.719
O
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 GLY A:238 A:238 60.0 0.8 S -47.3 164.5 60.0 0.8 0.0 HOH
3.295
O
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 GLY A:238 A:238 59.0 0.787 S -52.0 -170.2 59.0 0.787 0.0 ARE
HOH
7.226
3.091
O
O
O2G
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 GLY A:238 A:238 35.0 0.467 S 98.6 -10.1 35.0 0.467 0.0 HOH
3.188
C
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 GLY A:238 A:238 37.0 0.493 S 89.9 168.5 37.0 0.493 0.0 HOH
3.417
C
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 GLY A:238 A:238 39.0 0.52 S 97.2 168.7 39.0 0.52 0.0 HOH
3.011
O
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 GLY A:238 A:238 56.0 0.747 S -70.8 178.9 56.0 0.747 0.0 HOH
3.115
O
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 GLY A:238 A:238 44.0 0.587 S 162.4 -85.5 44.0 0.587 0.0 0XR
HOH
5.529
6.716
N
CA
O4
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 GLY A:238 A:238 36.0 0.48 S 92.7 -10.5 36.0 0.48 0.0 HOH
3.428
C
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 GLY A:238 A:238 34.0 0.453 S 107.1 166.3 34.0 0.453 0.0 3L9
HOH
4.851
2.815
O
O
O4B
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 GLY A:238 A:238 30.0 0.4 S 86.8 171.6 30.0 0.4 0.0 HOH
2.731
HA2
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 GLY A:238 A:238 35.0 0.467 S 98.1 162.5 35.0 0.467 0.0 5J7
HOH
9.666
2.684
H
HA2
O06
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 GLY A:238 A:238 37.0 0.493 S 104.5 -6.8 37.0 0.493 0.0 HOH
2.653
HA2
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 GLY A:238 A:238 31.0 0.413 S 84.1 172.3 31.0 0.413 0.0 HOH
5.281
O
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 GLY A:238 A:238 29.0 0.387 S 84.0 172.9 29.0 0.387 0.0 HOH
2.738
HA2
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 GLY A:238 A:238 32.0 0.427 S 95.3 166.0 32.0 0.427 0.0 HOH
7.097
N
O
GLY B:238 B:238 30.0 0.4 S 94.8 166.1 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 GLY A:238 A:238 28.0 0.373 S 85.3 173.8 28.0 0.373 0.0 ZXU
HOH
9.546
2.776
O
HA2
HO26
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 GLY A:238 A:238 31.0 0.413 S 87.7 170.4 31.0 0.413 0.0 ZXY
HOH
9.054
2.834
H
HA2
HO25
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 GLY A:238 A:238 32.0 0.427 S 89.8 173.0 32.0 0.427 0.0 GLC
GLC
HOH
4.399
6.667
3.148
O
O
O
O2
O2
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 GLY A:238 A:238 32.0 0.427 S 89.0 173.5 32.0 0.427 0.0 GLC
GLC
HOH
4.380
6.738
2.992
O
O
O
O2
O2
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 GLY A:238 A:238 37.0 0.493 S 89.4 167.0 37.0 0.493 0.0 BGC
GLC
HOH
5.052
6.973
3.266
O
O
CA
O3
O2
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 GLY A:238 A:238 37.0 0.493 S 96.6 168.6 37.0 0.493 0.0 GLC
GLC
HOH
4.664
6.982
3.088
O
O
O
O2
O2
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 GLY A:238 A:238 63.0 0.84 S -132.0 142.2 63.0 0.84 0.0 HOH
4.358
O
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 GLY A:238 A:238 55.0 0.733 S -56.6 170.8 55.0 0.733 0.0 HOH
3.339
O
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 GLY A:238 A:238 40.0 0.533 S 85.2 164.5 40.0 0.533 0.0 AAO
HOH
5.613
3.411
O
CA
O2T
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 GLY A:238 A:238 58.0 0.773 S -85.3 -178.7 58.0 0.773 0.0 HOH
2.393
N
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 GLY A:238 A:238 42.0 0.56 S 85.7 155.2 42.0 0.56 0.0 ARE
HOH
7.272
3.419
O
O
O2G
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 GLY A:238 A:238 60.0 0.8 S -67.8 172.9 60.0 0.8 0.0 HOH
3.887
O
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 GLY A:238 A:238 36.0 0.48 S 96.3 -17.5 36.0 0.48 0.0 HOH
2.924
O
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 GLY A:238 A:238 59.0 0.787 S -80.1 -169.3 59.0 0.787 0.0 ARE
HOH
7.469
3.623
O
O
O2G
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 GLY A:238 A:238 39.0 0.52 S 82.9 167.7 39.0 0.52 0.0 HOH
3.458
CA
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 GLY A:238 A:238 31.0 0.413 S 98.0 166.6 31.0 0.413 0.0 GLC
HOH
6.648
2.762
O
O
HO3
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 GLY A:238 A:238 54.0 0.72 S 148.4 -66.8 54.0 0.72 0.0 HOH
5.060
CA
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 GLY A:238 A:238 60.0 0.8 S -83.1 179.9 60.0 0.8 0.0 HOH
3.729
O
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 GLY A:238 A:238 56.0 0.747 S -46.1 -169.3 56.0 0.747 0.0 HOH
3.230
O
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 GLY A:238 A:238 35.0 0.467 S 93.9 162.3 35.0 0.467 0.0 GLC
HOH
7.019
3.220
O
CA
O2
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 GLY A:238 A:238 41.0 0.547 S 84.3 162.4 41.0 0.547 0.0 HOH
3.333
CA
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 GLY A:238 A:238 39.0 0.52 S 86.8 159.8 39.0 0.52 0.0 HOH
6.997
N
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 GLY A:238 A:238 31.0 0.413 S 87.0 162.3 31.0 0.413 0.0 HOH
3.200
O
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 GLY A:238 A:238 32.0 0.427 S 91.4 161.1 32.0 0.427 0.0 HOH
5.683
O
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 GLY A:238 A:238 35.0 0.467 S 91.6 165.6 35.0 0.467 0.0 GLC
AGL
HOH
6.870
8.957
3.499
O
CA
C
O2
O3
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 GLY A:238 A:238 31.0 0.413 S 87.4 173.9 31.0 0.413 0.0 HOH
5.582
O
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 GLY A:238 A:238 40.0 0.533 S 73.9 179.6 22.0 0.293 0.24 B:P04745:0.24
HOH
5.380
O
O
GLY B:238 B:238 41.0 0.547 S 73.8 179.6 20.0 0.267 0.28 A:P04745:0.28
HOH
5.380
O
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 GLY A:238 X:238 33.0 0.44 S 91.4 168.6 33.0 0.44 0.0 HOH
3.143
O
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 GLY A:238 A:238 41.0 0.547 S 103.6 167.3 41.0 0.547 0.0 HOH
2.933
O
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 GLY A:238 X:238 35.0 0.467 S 112.8 168.0 35.0 0.467 0.0 HOH
3.071
O
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 GLY A:238 A:238 37.0 0.493 S 103.1 165.2 37.0 0.493 0.0 GLC
AGL
HOH
6.941
8.728
3.573
O
CA
C
O2
O3
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 GLY A:238 A:238 43.0 0.573 S 98.7 159.8 43.0 0.573 0.0 GLC
HOH
7.147
4.812
O
O
O2
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 GLY A:238 X:238 39.0 0.52 S 100.1 170.6 39.0 0.52 0.0 GLC
HOH
6.723
2.842
O
O
O2
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 GLY A:238 A:238 31.0 0.413 S 101.1 171.2 31.0 0.413 0.0 HOH
3.329
C
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 GLY A:238 A:238 38.0 0.507 S 102.9 169.0 38.0 0.507 0.0 GLC
GLC
AGL
HMC
HOH
7.379
6.856
8.831
6.135
3.462
O
O
CA
CA
C
O3
O2
O3
O3
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 GLY A:238 A:238 34.0 0.453 S 96.9 168.8 34.0 0.453 0.0 GLC
HOH
6.747
2.833
O
O
O2
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 GLY A:238 A:238 42.0 0.56 S 104.5 144.6 42.0 0.56 0.0 HOH
3.312
CA
O
GLY B:238 B:238 44.0 0.587 S 102.3 143.8 NA NA NA
GLY C:238 C:238 41.0 0.547 S 104.7 143.6 NA NA NA
GLY D:238 D:238 38.0 0.507 S 104.3 145.2 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 GLY A:238 A:238 38.0 0.507 S 87.5 171.3 12.0 0.16 0.347 B:None:0.347
HOH
3.516
CA
O
GLY C:238 C:238 37.0 0.493 S 82.6 166.8 NA NA NA
GLY E:238 E:238 39.0 0.52 S 98.8 171.8 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 GLY A:238 A:238 35.0 0.467 S 97.1 169.4 35.0 0.467 0.0 HOH
2.859
O
O
GLY B:238 B:238 35.0 0.467 S 88.0 164.2 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 GLY A:238 A:238 49.0 0.653 S 99.8 -4.2 39.0 0.52 0.133 B:P02873:0.133
HOH
2.682
H
H2
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 GLY A:238 A:238 35.0 0.467 S 106.8 175.4 35.0 0.467 0.0 BGC
HOH
6.801
2.920
O
O
O2
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 GLY A:238 A:238 39.0 0.52 S 97.5 169.9 39.0 0.52 0.0 HOH
6.154
N
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 GLY A:238 A:238 35.0 0.467 S 94.0 154.2 35.0 0.467 0.0 HOH
2.476
O
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 GLY A:238 A:238 33.0 0.44 S 96.5 155.1 33.0 0.44 0.0 HOH
2.549
O
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 GLY A:238 A:238 30.0 0.4 S 93.8 160.0 30.0 0.4 0.0 GLC
HOH
7.606
3.248
CA
C
O3
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 GLY A:238 A:238 40.0 0.533 S 91.5 167.8 40.0 0.533 0.0 MA1
HOH
6.714
3.620
O
CA
O2
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 GLY A:238 A:238 35.0 0.467 S 81.7 157.2 35.0 0.467 0.0 BGC
HOH
8.018
2.853
O
O
O2
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 GLY A:238 A:238 53.0 0.707 S 109.3 -8.0 53.0 0.707 0.0 GLC
HOH
7.612
2.928
CA
O
O3
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 GLY A:238 A:238 27.0 0.36 S 86.7 166.5 27.0 0.36 0.0 GLC
HOH
7.777
3.478
CA
C
O3
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 GLY A:238 P:238 58.0 0.773 S -97.8 -121.3 16.0 0.213 0.56 B:P01092:0.56
HOH
3.736
O
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 GLY A:238 A:238 37.0 0.493 S 96.1 149.5 37.0 0.493 0.0 HOH
2.520
O
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 GLY A:238 A:238 40.0 0.533 S 91.7 152.8 40.0 0.533 0.0 BGC
GLC
BGC
HOH
4.742
8.030
7.771
2.440
O
O
CA
O
O2
O2
O3
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 GLY A:238 A:238 35.0 0.467 S 105.6 150.3 31.0 0.413 0.054 B:None:0.053
HOH
6.019
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 GLY A:253 A:253 34.0 0.453 S 92.0 171.5
af-p19961-f1 1 P19961 98.83 0.0 GLY A:253 A:253 33.0 0.44 S 84.1 173.5
af-p0dte7-f1 1 P0DTE7 96.87 0.0 GLY A:253 A:253 33.0 0.44 S 83.9 173.6
af-p0dte8-f1 1 P0DTE8 96.87 0.0 GLY A:253 A:253 33.0 0.44 S 84.2 173.7
af-p0dub6-f1 1 P0DUB6 96.87 0.0 GLY A:253 A:253 32.0 0.427 S 85.8 174.5