Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104163275 . A C CCDS783.1:NM_000699.2:c.847Aag>Cag_NP_000690.1:p.283K>Q Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 LYS A:268 A:268 67.0 0.335 T 62.4 37.0 67.0 0.335 0.0 HOH
7.477
N
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 LYS A:268 A:268 72.0 0.36 T 61.5 37.0 72.0 0.36 0.0 HOH
3.074
O
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 LYS A:268 A:268 72.0 0.36 T 62.7 41.3 72.0 0.36 0.0 HOH
3.497
CG
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 LYS A:268 A:268 68.0 0.34 T 62.5 40.2 68.0 0.34 0.0 HOH
2.699
O
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 LYS A:268 A:268 69.0 0.345 T 64.0 39.5 69.0 0.345 0.0 HOH
3.279
CE
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 LYS A:268 A:268 66.0 0.33 T 63.2 35.6 66.0 0.33 0.0 HOH
3.307
CG
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 LYS A:268 A:268 68.0 0.34 T 60.8 42.5 68.0 0.34 0.0 HOH
2.724
NZ
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:268 A:268 70.0 0.35 T 63.8 33.8 70.0 0.35 0.0 HOH
2.881
NZ
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:268 A:268 69.0 0.345 T 62.3 39.2 69.0 0.345 0.0 HOH
3.331
CG
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:268 A:268 69.0 0.345 T 62.9 38.7 69.0 0.345 0.0 HOH
3.111
CE
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 LYS A:268 A:268 67.0 0.335 T 60.6 38.2 67.0 0.335 0.0 HOH
4.238
NZ
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:268 A:268 69.0 0.345 T 56.9 42.3 69.0 0.345 0.0 HOH
2.596
NZ
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:268 A:268 66.0 0.33 T 61.5 39.1 66.0 0.33 0.0 HOH
2.678
NZ
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:268 A:268 70.0 0.35 T 61.9 39.2 70.0 0.35 0.0 HOH
3.036
O
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:268 A:268 70.0 0.35 T 59.9 32.1 70.0 0.35 0.0 HOH
2.529
O
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 LYS A:268 A:268 67.0 0.335 T 62.4 38.1 67.0 0.335 0.0 HOH
2.480
O
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 LYS A:268 A:268 65.0 0.325 T 64.2 40.3 65.0 0.325 0.0 HOH
2.635
O
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 LYS A:268 A:268 68.0 0.34 T 61.1 37.1 68.0 0.34 0.0 HOH
2.660
NZ
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 LYS A:268 A:268 67.0 0.335 T 60.7 41.8 67.0 0.335 0.0 HOH
2.871
O
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 LYS A:268 A:268 62.0 0.31 T 61.2 32.5 62.0 0.31 0.0 HOH
3.461
NZ
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 LYS A:268 A:268 65.0 0.325 T 61.6 36.6 65.0 0.325 0.0 HOH
2.723
NZ
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 LYS A:268 A:268 71.0 0.355 T 60.4 43.4 71.0 0.355 0.0 HOH
2.613
O
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 LYS A:268 A:268 65.0 0.325 T 62.9 36.7 65.0 0.325 0.0 HOH
1.787
HZ2
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 LYS A:268 A:268 70.0 0.35 T 58.2 38.6 70.0 0.35 0.0 HOH
1.750
HZ3
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 LYS A:268 A:268 66.0 0.33 T 63.1 37.1 66.0 0.33 0.0 HOH
1.771
HZ1
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 LYS A:268 A:268 70.0 0.35 T 60.9 39.2 70.0 0.35 0.0 HOH
2.769
O
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 LYS A:268 A:268 68.0 0.34 T 61.6 37.4 68.0 0.34 0.0 HOH
1.537
HZ2
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 LYS A:268 A:268 75.0 0.375 T 56.3 40.1 75.0 0.375 0.0 HOH
3.530
CG
O
LYS B:268 B:268 66.0 0.33 T 56.3 42.3 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 LYS A:268 A:268 67.0 0.335 T 63.8 34.6 67.0 0.335 0.0 HOH
2.552
HE2
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 LYS A:268 A:268 70.0 0.35 T 63.1 35.6 70.0 0.35 0.0 HOH
1.711
HZ2
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:268 A:268 67.0 0.335 T 59.2 40.6 67.0 0.335 0.0 HOH
2.440
O
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:268 A:268 70.0 0.35 T 58.8 40.3 70.0 0.35 0.0 HOH
2.493
NZ
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:268 A:268 64.0 0.32 T 59.1 40.0 64.0 0.32 0.0 HOH
2.630
O
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 LYS A:268 A:268 71.0 0.355 T 59.6 40.6 71.0 0.355 0.0 HOH
2.522
NZ
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 LYS A:268 A:268 70.0 0.35 T 61.1 44.0 70.0 0.35 0.0 HOH
2.718
O
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:268 A:268 73.0 0.365 T 64.3 37.6 73.0 0.365 0.0 HOH
2.921
O
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:268 A:268 72.0 0.36 T 59.9 38.0 72.0 0.36 0.0 HOH
2.814
O
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:268 A:268 69.0 0.345 T 60.4 39.7 69.0 0.345 0.0 HOH
3.049
O
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 LYS A:268 A:268 72.0 0.36 T 59.8 40.0 72.0 0.36 0.0 HOH
2.876
O
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 LYS A:268 A:268 66.0 0.33 T 60.3 40.4 66.0 0.33 0.0 HOH
2.499
NZ
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 LYS A:268 A:268 69.0 0.345 T 59.2 43.4 69.0 0.345 0.0 HOH
2.418
NZ
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 LYS A:268 A:268 65.0 0.325 T 63.5 36.3 65.0 0.325 0.0 HOH
2.879
CE
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 LYS A:268 A:268 72.0 0.36 T 67.3 37.3 72.0 0.36 0.0 HOH
2.799
O
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 LYS A:268 A:268 71.0 0.355 T 57.7 42.6 71.0 0.355 0.0 GLC
HOH
9.651
2.406
HA
HE2
O2
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 LYS A:268 A:268 71.0 0.355 T 60.5 44.7 71.0 0.355 0.0 HOH
3.318
NZ
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 LYS A:268 A:268 68.0 0.34 T 63.6 38.1 68.0 0.34 0.0 HOH
3.555
CG
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 LYS A:268 A:268 70.0 0.35 T 60.4 41.9 70.0 0.35 0.0 HOH
3.914
NZ
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 LYS A:268 A:268 71.0 0.355 T 50.4 42.5 71.0 0.355 0.0 HOH
4.903
N
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 LYS A:268 A:268 71.0 0.355 T 64.2 36.8 71.0 0.355 0.0 HOH
3.011
O
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 LYS A:268 A:268 69.0 0.345 T 56.8 44.5 69.0 0.345 0.0 HOH
3.209
CG
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 LYS A:268 A:268 68.0 0.34 T 60.5 42.8 68.0 0.34 0.0 HOH
2.780
NZ
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 LYS A:268 A:268 68.0 0.34 T 58.3 44.8 68.0 0.34 0.0 HOH
3.283
CG
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 LYS A:268 A:268 71.0 0.355 T 59.0 44.1 71.0 0.355 0.0 HOH
2.724
O
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 LYS A:268 A:268 72.0 0.36 T 52.6 46.7 72.0 0.36 0.0 HOH
3.582
NZ
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 LYS A:268 A:268 73.0 0.365 T 59.6 43.4 73.0 0.365 0.0 HOH
3.417
NZ
O
LYS B:268 B:268 72.0 0.36 T 59.6 43.4 72.0 0.36 0.0 HOH
3.417
NZ
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 LYS A:268 X:268 69.0 0.345 T 57.4 42.4 69.0 0.345 0.0 HOH
2.771
NZ
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 LYS A:268 A:268 72.0 0.36 T 58.1 40.1 72.0 0.36 0.0 HOH
2.785
O
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 LYS A:268 X:268 69.0 0.345 T 48.2 47.2 69.0 0.345 0.0 HOH
2.756
O
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 LYS A:268 A:268 72.0 0.36 T 54.1 43.0 72.0 0.36 0.0 HOH
2.803
O
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 LYS A:268 A:268 69.0 0.345 T 58.8 44.2 69.0 0.345 0.0 HOH
2.820
O
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 LYS A:268 X:268 74.0 0.37 T 61.9 38.7 74.0 0.37 0.0 HOH
2.706
O
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 LYS A:268 A:268 69.0 0.345 T 61.5 42.0 69.0 0.345 0.0 HOH
2.770
NZ
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 LYS A:268 A:268 71.0 0.355 T 54.7 43.5 71.0 0.355 0.0 HOH
2.767
O
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 LYS A:268 A:268 72.0 0.36 T 61.1 39.2 72.0 0.36 0.0 HOH
2.633
O
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 LYS A:268 A:268 69.0 0.345 T 57.1 45.7 69.0 0.345 0.0 HOH
2.724
O
O
LYS B:268 B:268 69.0 0.345 T 59.5 42.4 NA NA NA
LYS C:268 C:268 69.0 0.345 T 59.6 41.3 NA NA NA
LYS D:268 D:268 65.0 0.325 T 57.9 42.8 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 LYS A:268 A:268 68.0 0.34 T 59.2 41.1 66.0 0.33 0.01 B:None:0.01
HOH
2.292
O
O
LYS C:268 C:268 60.0 0.3 T 53.2 46.9 NA NA NA
LYS E:268 E:268 64.0 0.32 T 61.4 42.6 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 LYS A:268 A:268 66.0 0.33 T 64.3 35.6 66.0 0.33 0.0 HOH
2.707
NZ
O
LYS B:268 B:268 68.0 0.34 T 61.3 38.8 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 LYS A:268 A:268 67.0 0.335 T 65.3 43.7 67.0 0.335 0.0 HOH
3.273
CG
H1
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 LYS A:268 A:268 65.0 0.325 T 57.5 45.3 65.0 0.325 0.0 HOH
2.849
O
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 LYS A:268 A:268 68.0 0.34 T 59.9 44.1 68.0 0.34 0.0 HOH
2.719
O
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 LYS A:268 A:268 71.0 0.355 T 60.2 36.4 71.0 0.355 0.0 HOH
2.090
HZ1
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 LYS A:268 A:268 73.0 0.365 T 58.2 42.2 73.0 0.365 0.0 HOH
2.588
HE3
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 LYS A:268 A:268 67.0 0.335 T 56.3 47.0 67.0 0.335 0.0 EDO
HOH
8.103
2.816
O
O
O2
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 LYS A:268 A:268 65.0 0.325 T 62.8 41.1 65.0 0.325 0.0 HOH
3.016
O
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 LYS A:268 A:268 70.0 0.35 T 65.4 46.3 70.0 0.35 0.0 HOH
2.935
O
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 LYS A:268 A:268 67.0 0.335 T 59.6 40.9 67.0 0.335 0.0 HOH
2.492
NZ
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 LYS A:268 A:268 73.0 0.365 T 62.4 45.2 73.0 0.365 0.0 HOH
2.698
NZ
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 LYS A:268 P:268 67.0 0.335 T 58.4 23.8 67.0 0.335 0.0 HOH
2.673
NZ
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 LYS A:268 A:268 73.0 0.365 T 59.4 45.2 73.0 0.365 0.0 HOH
2.650
O
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 LYS A:268 A:268 69.0 0.345 T 68.2 43.4 69.0 0.345 0.0 HOH
3.190
CG
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 LYS A:268 A:268 71.0 0.355 T 59.4 42.2 71.0 0.355 0.0 HOH
3.285
CG
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 LYS A:283 A:283 65.0 0.325 T 57.4 32.6
af-p19961-f1 1 P19961 98.83 0.0 LYS A:283 A:283 64.0 0.32 T 57.3 32.2
af-p0dte7-f1 1 P0DTE7 96.87 0.0 LYS A:283 A:283 65.0 0.325 T 57.4 31.6
af-p0dte8-f1 1 P0DTE8 96.87 0.0 LYS A:283 A:283 66.0 0.33 T 57.2 31.8
af-p0dub6-f1 1 P0DUB6 96.87 0.0 LYS A:283 A:283 66.0 0.33 T 57.8 31.7