Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104166597 . G A CCDS783.1:NM_000699.2:c.1211cGc>cAc_NP_000690.1:p.404R>H Homo sapiens amylase, alpha 2A (pancreatic) (AMY2A), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b2y 1 P04746 100.0 0.0 X-RAY
2000-02-16 ARG A:389 A:389 74.0 0.329 H -48.3 -46.3 74.0 0.329 0.0 HOH
2.848
N
O
1bsi 1 P04746 99.8 0.0 X-RAY
1999-05-18 ARG A:389 A:389 79.0 0.351 H -46.1 -47.3 79.0 0.351 0.0 HOH
3.154
NH2
O
1cpu 1 P04746 99.8 0.0 X-RAY
1999-06-14 ARG A:389 A:389 76.0 0.338 H -48.9 -48.7 76.0 0.338 0.0 HOH
3.007
NH1
O
1hny 1 P04746 99.8 0.0 X-RAY
1996-03-08 ARG A:389 A:389 75.0 0.333 H -46.1 -49.2 75.0 0.333 0.0 HOH
2.834
NH1
O
1u2y 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:389 A:389 76.0 0.338 H -47.5 -48.2 76.0 0.338 0.0 HOH
3.474
NH2
O
1u30 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:389 A:389 76.0 0.338 H -48.7 -47.3 76.0 0.338 0.0 HOH
3.990
NH1
O
1u33 1 P04746 99.8 0.0 X-RAY
2004-09-07 ARG A:389 A:389 75.0 0.333 H -46.2 -45.7 75.0 0.333 0.0 HOH
2.696
NH2
O
1xcw 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:389 A:389 82.0 0.364 H -45.6 -50.6 82.0 0.364 0.0 HOH
3.862
NH2
O
1xcx 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:389 A:389 75.0 0.333 H -46.9 -48.5 75.0 0.333 0.0 HOH
4.977
N
O
1xd0 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:389 A:389 66.0 0.293 H -47.8 -46.3 66.0 0.293 0.0 HOH
3.386
N
O
1xd1 1 P04746 99.8 0.0 X-RAY
2004-12-07 ARG A:389 A:389 74.0 0.329 H -46.4 -49.5 74.0 0.329 0.0 HOH
3.509
N
O
2qmk 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:389 A:389 64.0 0.284 H -46.1 -53.5 64.0 0.284 0.0 HOH
2.569
NH1
O
2qv4 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:389 A:389 63.0 0.28 H -50.9 -53.8 63.0 0.28 0.0 HOH
2.874
NH1
O
3bai 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:389 A:389 67.0 0.298 H -45.6 -44.3 67.0 0.298 0.0 HOH
2.986
N
O
3baj 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:389 A:389 70.0 0.311 H -45.0 -55.0 70.0 0.311 0.0 HOH
3.586
NH2
O
3baw 1 P04746 99.8 0.0 X-RAY
2008-03-25 ARG A:389 A:389 62.0 0.276 H -51.9 -47.4 62.0 0.276 0.0 HOH
2.880
NH2
O
3ij7 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:389 A:389 76.0 0.338 H -48.5 -48.4 76.0 0.338 0.0 GLF
B8D
HOH
5.550
3.113
2.703
N
NH1
NH1
O4
O3
O
3ij8 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:389 A:389 74.0 0.329 H -49.7 -45.0 74.0 0.329 0.0 HOH
2.852
N
O
3ij9 1 P04746 99.8 0.0 X-RAY
2009-10-27 ARG A:389 A:389 76.0 0.338 H -48.2 -46.1 76.0 0.338 0.0 HOH
2.928
N
O
4gqq 1 P04746 99.8 0.0 X-RAY
2012-10-24 ARG A:389 A:389 80.0 0.356 H -49.5 -42.1 80.0 0.356 0.0 HOH
3.086
NH1
O
4gqr 1 P04746 99.8 0.0 X-RAY
2012-10-24 ARG A:389 A:389 65.0 0.289 H -48.7 -46.4 65.0 0.289 0.0 HOH
3.069
NH1
O
4w93 1 P04746 99.8 0.0 X-RAY
2015-07-15 ARG A:389 A:389 73.0 0.324 H -52.6 -41.2 73.0 0.324 0.0 HOH
2.968
NH1
O
4x9y 1 P04746 99.8 0.0 X-RAY
2014-12-31 ARG A:389 A:389 64.0 0.284 H -52.0 -44.2 64.0 0.284 0.0 HOH
2.114
HH11
O
5e0f 1 P04746 99.8 0.0 X-RAY
2016-09-07 ARG A:389 A:389 72.0 0.32 H -48.1 -43.4 72.0 0.32 0.0 HOH
2.147
H
O
5emy 1 P04746 99.8 0.0 X-RAY
2016-07-06 ARG A:389 A:389 64.0 0.284 H -50.4 -45.5 64.0 0.284 0.0 HOH
2.191
HH11
O
5kez 1 P04746 99.8 0.0 X-RAY
2017-03-29 ARG A:389 A:389 76.0 0.338 H -54.2 -43.6 76.0 0.338 0.0 HOH
3.047
NH1
O
5u3a 1 P04746 99.8 0.0 X-RAY
2017-12-06 ARG A:389 A:389 63.0 0.28 H -51.4 -44.8 63.0 0.28 0.0 HOH
2.021
H
O
5va9 1 P04746 99.8 0.0 X-RAY
2018-03-28 ARG A:389 A:389 60.0 0.267 H -50.8 -43.0 60.0 0.267 0.0 HOH
3.000
N
O
ARG B:389 B:389 71.0 0.316 H -51.9 -43.7 NA NA NA
6obx 1 P04746 99.8 0.0 X-RAY
2020-02-12 ARG A:389 A:389 63.0 0.28 H -50.9 -44.6 63.0 0.28 0.0 HOH
2.006
H
O
6ocn 1 P04746 99.8 0.0 X-RAY
2020-02-12 ARG A:389 A:389 64.0 0.284 H -50.8 -44.6 64.0 0.284 0.0 HOH
2.121
HH11
O
3old 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:389 A:389 64.0 0.284 H -52.9 -44.1 64.0 0.284 0.0 BGC
GLC
GLC
HOH
9.223
5.127
2.815
2.997
NH2
N
NH1
NH2
O3
O4
O3
O
3ole 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:389 A:389 65.0 0.289 H -49.9 -47.1 65.0 0.289 0.0 BGC
GLC
GLC
HOH
9.075
5.051
2.778
2.763
N
N
NH1
NH2
O4
O4
O3
O
3olg 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:389 A:389 63.0 0.28 H -49.8 -47.1 63.0 0.28 0.0 GLC
HOH
4.996
3.031
N
NH1
O4
O
3oli 1 P04746 99.8 0.0 X-RAY
2011-04-13 ARG A:389 A:389 68.0 0.302 H -49.5 -44.7 68.0 0.302 0.0 BGC
MPD
HOH
5.066
3.212
2.669
N
CB
NH2
O4
C1
O
1kgw 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:389 A:389 74.0 0.329 H -51.4 -42.8 74.0 0.329 0.0 HOH
3.105
NH1
O
1xgz 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:389 A:389 67.0 0.298 H -46.5 -45.7 67.0 0.298 0.0 HOH
3.186
N
O
1xh0 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:389 A:389 69.0 0.307 H -47.2 -50.5 69.0 0.307 0.0 HOH
3.415
N
O
1xh1 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:389 A:389 78.0 0.347 H -47.9 -47.6 78.0 0.347 0.0 HOH
3.155
N
O
1xh2 1 P04746 99.6 0.0 X-RAY
2005-05-24 ARG A:389 A:389 76.0 0.338 H -49.5 -45.7 76.0 0.338 0.0 HOH
2.894
NH1
O
3bak 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:389 A:389 64.0 0.284 H -44.5 -48.0 64.0 0.284 0.0 HOH
2.917
NH1
O
3bax 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:389 A:389 64.0 0.284 H -49.4 -47.4 64.0 0.284 0.0 HOH
2.858
NH2
O
3bay 1 P04746 99.6 0.0 X-RAY
2008-03-25 ARG A:389 A:389 73.0 0.324 H -44.8 -49.9 73.0 0.324 0.0 HOH
3.076
CG
O
1kgx 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:389 A:389 75.0 0.333 H -47.3 -48.6 75.0 0.333 0.0 HOH
3.277
N
O
6z8l 1 P04746 99.6 0.0 X-RAY
2020-12-02 ARG A:389 A:389 72.0 0.32 H -52.4 -43.6 72.0 0.32 0.0 HOH
2.283
HH11
O
1kgu 1 P04746 99.6 0.0 X-RAY
2002-01-16 ARG A:389 A:389 75.0 0.333 H -50.3 -43.7 75.0 0.333 0.0 HOH
2.878
NH1
O
2cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ARG A:389 A:389 73.0 0.324 H -48.6 -47.6 73.0 0.324 0.0 HOH
3.282
N
O
3cpu 1 P04746 99.6 0.0 X-RAY
2001-06-30 ARG A:389 A:389 74.0 0.329 H -54.8 -38.9 74.0 0.329 0.0 HOH
3.106
NH1
O
5td4 1 P04746 99.6 0.0 X-RAY
2016-11-02 ARG A:389 A:389 71.0 0.316 H -52.3 -41.7 71.0 0.316 0.0 HOH
3.235
NH1
O
1kb3 1 P04746 99.6 0.0 X-RAY
2002-05-01 ARG A:389 A:389 75.0 0.333 H -48.3 -48.5 75.0 0.333 0.0 HOH
3.511
NH2
O
1kbb 1 P04746 99.6 0.0 X-RAY
2002-04-10 ARG A:389 A:389 74.0 0.329 H -49.1 -45.9 74.0 0.329 0.0 HOH
2.957
NH1
O
1kbk 1 P04746 99.6 0.0 X-RAY
2002-04-10 ARG A:389 A:389 74.0 0.329 H -49.6 -46.5 74.0 0.329 0.0 HOH
3.739
NE
O
1c8q 1 P04745 96.98 0.0 X-RAY
2001-06-13 ARG A:389 A:389 73.0 0.324 H -44.8 -45.2 73.0 0.324 0.0 HOH
2.895
NH1
O
1mfv 1 P04745 96.98 0.0 X-RAY
2002-11-20 ARG A:389 A:389 74.0 0.329 H -46.4 -48.6 74.0 0.329 0.0 HOH
3.009
N
O
1smd 1 P04745 96.98 0.0 X-RAY
1996-07-11 ARG A:389 A:389 75.0 0.333 H -48.8 -47.6 75.0 0.333 0.0 HOH
3.173
NH2
O
1xv8 1 P04745 96.98 0.0 X-RAY
2005-10-11 ARG A:389 A:389 73.0 0.324 H -58.3 -53.8 73.0 0.324 0.0 HOH
5.664
N
O
ARG B:389 B:389 72.0 0.32 H -58.3 -53.9 72.0 0.32 0.0 HOH
5.664
N
O
1z32 1 P04745 96.77 0.0 X-RAY
2005-05-31 ARG A:389 X:389 72.0 0.32 H -48.6 -46.4 72.0 0.32 0.0 HOH
2.930
NH1
O
1jxj 1 P04745 96.77 0.0 X-RAY
2001-09-14 ARG A:389 A:389 72.0 0.32 H -53.5 -42.2 72.0 0.32 0.0 HOH
2.798
NH2
O
1q4n 1 P04745 96.77 0.0 X-RAY
2004-03-16 ARG A:389 X:389 73.0 0.324 H -50.2 -41.8 73.0 0.324 0.0 HOH
3.233
NH1
O
1nm9 1 P04745 96.77 0.0 X-RAY
2004-01-20 ARG A:389 A:389 71.0 0.316 H -47.4 -44.8 71.0 0.316 0.0 HOH
3.058
NH1
O
3blk 1 P04745 96.77 0.0 X-RAY
2008-11-25 ARG A:389 A:389 75.0 0.333 H -57.1 -43.8 75.0 0.333 0.0 HOH
3.056
N
O
3blp 1 P04745 96.77 0.0 X-RAY
2008-11-18 ARG A:389 X:389 74.0 0.329 H -49.2 -43.3 74.0 0.329 0.0 HOH
2.981
N
O
1jxk 1 P04745 95.97 0.0 X-RAY
2001-09-14 ARG A:384 A:384 77.0 0.342 H -47.8 -43.0 77.0 0.342 0.0 HOH
2.457
NH2
O
1mfu 1 P04745 95.97 0.0 X-RAY
2002-11-20 ARG A:384 A:384 72.0 0.32 H -52.2 -45.6 72.0 0.32 0.0 GLC
GLC
AGL
HMC
HOH
9.006
4.908
2.973
3.543
2.700
N
N
NH1
CG
NH1
O4
O4
O3
O7
O
3dhp 1 P04745 95.77 0.0 X-RAY
2008-07-01 ARG A:389 A:389 74.0 0.329 H -51.2 -43.4 74.0 0.329 0.0 HOH
2.939
N
O
1kxq 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:389 A:389 87.0 0.387 H -50.5 -44.5 87.0 0.387 0.0 HOH
2.824
NH1
O
ARG B:389 B:389 82.0 0.364 H -48.3 -47.9 NA NA NA
ARG C:389 C:389 82.0 0.364 H -51.5 -44.4 NA NA NA
ARG D:389 D:389 62.0 0.276 H -51.3 -45.1 NA NA NA
1kxt 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:389 A:389 75.0 0.333 H -46.5 -43.8 75.0 0.333 0.0 HOH
3.171
N
O
ARG C:389 C:389 84.0 0.373 H -44.3 -51.0 NA NA NA
ARG E:389 E:389 82.0 0.364 H -55.3 -46.0 NA NA NA
1kxv 1 P00690 86.9 0.0 X-RAY
2002-06-19 ARG A:389 A:389 77.0 0.342 H -47.9 -45.1 77.0 0.342 0.0 HOH
2.885
N
O
ARG B:389 B:389 79.0 0.351 H -51.7 -42.6 NA NA NA
1dhk 1 P00690 86.9 0.0 X-RAY
1997-12-24 ARG A:389 A:389 73.0 0.324 H -49.8 -47.0 73.0 0.324 0.0 HOH
1.445
H
H2
1ppi 1 P00690 86.9 0.0 X-RAY
1995-05-24 ARG A:389 A:389 80.0 0.356 H -49.7 -43.8 80.0 0.356 0.0 HOH
3.093
NH2
O
1vah 1 P00690 86.69 0.0 X-RAY
2005-04-26 ARG A:389 A:389 83.0 0.369 H -50.4 -46.5 83.0 0.369 0.0 HOH
7.036
N
O
3l2l 1 P00690 86.69 0.0 X-RAY
2010-04-14 ARG A:389 A:389 73.0 0.324 H -57.4 -43.3 73.0 0.324 0.0 HOH
2.162
H
O
3l2m 1 P00690 86.69 0.0 X-RAY
2010-04-14 ARG A:389 A:389 74.0 0.329 H -49.7 -45.0 74.0 0.329 0.0 HOH
1.907
H
O
1ua3 1 P00690 86.69 0.0 X-RAY
2003-10-14 ARG A:389 A:389 75.0 0.333 H -53.4 -45.0 75.0 0.333 0.0 GLC
GLC
HOH
5.308
2.847
2.852
N
NH2
NH2
O4
O3
O
1jfh 1 P00690 86.69 0.0 X-RAY
1998-12-02 ARG A:389 A:389 82.0 0.364 H -50.7 -46.7 82.0 0.364 0.0 MA1
GLC
HOH
5.737
2.643
3.580
N
NH2
NH2
S4
O3
O
1ose 1 P00690 86.49 0.0 X-RAY
1997-04-01 ARG A:389 A:389 78.0 0.347 H -49.9 -46.2 78.0 0.347 0.0 HOH
2.984
N
O
1hx0 1 P00690 86.49 0.0 X-RAY
2001-08-08 ARG A:389 A:389 76.0 0.338 H -52.0 -43.4 76.0 0.338 0.0 EDO
EDO
HOH
5.880
8.671
2.959
N
NH1
N
O2
O2
O
1wo2 1 P00690 86.49 0.0 X-RAY
2005-03-15 ARG A:389 A:389 75.0 0.333 H -52.9 -44.2 75.0 0.333 0.0 BGC
GLC
HOH
5.421
2.879
2.796
N
NH1
NH1
O4
O3
O
1bvn 1 P00690 86.49 0.0 X-RAY
1998-09-23 ARG A:389 P:389 77.0 0.342 H -47.6 -48.3 77.0 0.342 0.0 HOH
6.685
O
O
1pif 1 P00690 86.29 0.0 X-RAY
1996-12-07 ARG A:389 A:389 78.0 0.347 H -53.9 -42.6 78.0 0.347 0.0 HOH
3.126
N
O
1pig 1 P00690 86.29 0.0 X-RAY
1996-12-07 ARG A:389 A:389 75.0 0.333 H -47.4 -48.3 75.0 0.333 0.0 GLC
GLC
HOH
5.195
2.777
3.018
N
NH2
NH2
O4
O3
O
4x0n 1 P00690 86.29 0.0 X-RAY
2015-11-25 ARG A:389 A:389 71.0 0.316 H -52.9 -44.0 71.0 0.316 0.0 HOH
2.585
NH2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04746-f1 1 P04746 100.0 0.0 ARG A:404 A:404 80.0 0.356 H -49.2 -47.4
af-p19961-f1 1 P19961 98.83 0.0 ARG A:404 A:404 66.0 0.293 H -48.7 -47.7
af-p0dte7-f1 1 P0DTE7 96.87 0.0 ARG A:404 A:404 68.0 0.302 H -48.0 -47.9
af-p0dte8-f1 1 P0DTE8 96.87 0.0 ARG A:404 A:404 67.0 0.298 H -48.0 -47.7
af-p0dub6-f1 1 P0DUB6 96.87 0.0 ARG A:404 A:404 65.0 0.289 H -49.7 -47.4