Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104203011 . C A CCDS30782.1:NM_001008221.1:c.908cCt>cAt_NP_001008222.1:p.303P>H Homo sapiens amylase, alpha 1A (salivary) (AMY1A), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1c8q 1 P04745 99.8 0.0 X-RAY
2001-06-13 PRO A:288 A:288 50.0 0.345 -58.0 138.2 50.0 0.345 0.0 HOH
3.606
CD
O
1mfv 1 P04745 99.8 0.0 X-RAY
2002-11-20 PRO A:288 A:288 53.0 0.366 -57.4 138.1 53.0 0.366 0.0 HOH
3.695
CD
O
1smd 1 P04745 99.8 0.0 X-RAY
1996-07-11 PRO A:288 A:288 46.0 0.317 -58.5 136.6 46.0 0.317 0.0 HOH
6.527
N
O
1xv8 1 P04745 99.8 0.0 X-RAY
2005-10-11 PRO A:288 A:288 61.0 0.421 -35.2 126.1 61.0 0.421 0.0 HOH
6.365
CD
O
PRO B:288 B:288 61.0 0.421 -35.3 126.1 61.0 0.421 0.0 HOH
6.364
CD
O
1q4n 1 P04745 99.6 0.0 X-RAY
2004-03-16 PRO A:288 X:288 42.0 0.29 -55.6 140.2 42.0 0.29 0.0 HOH
3.867
CD
O
1z32 1 P04745 99.6 0.0 X-RAY
2005-05-31 PRO A:288 X:288 36.0 0.248 -54.3 136.1 36.0 0.248 0.0 HOH
3.653
CD
O
1jxj 1 P04745 99.6 0.0 X-RAY
2001-09-14 PRO A:288 A:288 52.0 0.359 -56.9 142.4 52.0 0.359 0.0 HOH
3.658
CD
O
1nm9 1 P04745 99.6 0.0 X-RAY
2004-01-20 PRO A:288 A:288 46.0 0.317 -54.3 139.7 46.0 0.317 0.0 HOH
3.823
CD
O
3blk 1 P04745 99.6 0.0 X-RAY
2008-11-25 PRO A:288 A:288 52.0 0.359 -59.2 145.0 52.0 0.359 0.0 HOH
4.048
CB
O
3blp 1 P04745 99.6 0.0 X-RAY
2008-11-18 PRO A:288 X:288 45.0 0.31 -56.0 140.3 45.0 0.31 0.0 HOH
3.807
CD
O
1jxk 1 P04745 98.79 0.0 X-RAY
2001-09-14 PRO A:288 A:288 53.0 0.366 -52.7 134.5 53.0 0.366 0.0 HOH
3.869
CA
O
1mfu 1 P04745 98.79 0.0 X-RAY
2002-11-20 PRO A:288 A:288 52.0 0.359 -55.9 140.4 52.0 0.359 0.0 HOH
4.032
C
O
3dhp 1 P04745 98.59 0.0 X-RAY
2008-07-01 PRO A:288 A:288 38.0 0.262 -59.8 137.6 38.0 0.262 0.0 HOH
3.462
N
O
3old 1 P04746 97.38 0.0 X-RAY
2011-04-13 PRO A:288 A:288 37.0 0.255 -56.6 139.9 37.0 0.255 0.0 HOH
3.842
C
O
3ole 1 P04746 97.38 0.0 X-RAY
2011-04-13 PRO A:288 A:288 38.0 0.262 -56.9 140.4 38.0 0.262 0.0 HOH
3.744
CD
O
3olg 1 P04746 97.38 0.0 X-RAY
2011-04-13 PRO A:288 A:288 48.0 0.331 -58.9 139.5 48.0 0.331 0.0 HOH
4.258
C
O
3oli 1 P04746 97.38 0.0 X-RAY
2011-04-13 PRO A:288 A:288 48.0 0.331 -58.7 140.0 48.0 0.331 0.0 HOH
3.836
CA
O
6z8l 1 P04746 97.18 0.0 X-RAY
2020-12-02 PRO A:288 A:288 46.0 0.317 -58.8 140.7 46.0 0.317 0.0 HOH
2.921
HD3
O
1b2y 1 P04746 97.18 0.0 X-RAY
2000-02-16 PRO A:288 A:288 48.0 0.331 -54.9 138.1 48.0 0.331 0.0 HOH
6.988
CD
O
1bsi 1 P04746 96.98 0.0 X-RAY
1999-05-18 PRO A:288 A:288 49.0 0.338 -58.1 141.3 49.0 0.338 0.0 HOH
4.568
CB
O
1cpu 1 P04746 96.98 0.0 X-RAY
1999-06-14 PRO A:288 A:288 50.0 0.345 -53.6 140.8 50.0 0.345 0.0 HOH
4.319
C
O
1hny 1 P04746 96.98 0.0 X-RAY
1996-03-08 PRO A:288 A:288 48.0 0.331 -54.6 137.9 48.0 0.331 0.0 HOH
3.784
CB
O
1u2y 1 P04746 96.98 0.0 X-RAY
2004-09-07 PRO A:288 A:288 48.0 0.331 -56.0 142.8 48.0 0.331 0.0 HOH
6.558
O
O
1u30 1 P04746 96.98 0.0 X-RAY
2004-09-07 PRO A:288 A:288 53.0 0.366 -59.7 144.5 53.0 0.366 0.0 HOH
6.615
N
O
1u33 1 P04746 96.98 0.0 X-RAY
2004-09-07 PRO A:288 A:288 50.0 0.345 -57.2 141.5 50.0 0.345 0.0 HOH
3.879
C
O
1xcw 1 P04746 96.98 0.0 X-RAY
2004-12-07 PRO A:288 A:288 51.0 0.352 -49.5 136.8 51.0 0.352 0.0 HOH
4.082
C
O
1xcx 1 P04746 96.98 0.0 X-RAY
2004-12-07 PRO A:288 A:288 52.0 0.359 -55.2 139.3 52.0 0.359 0.0 HOH
5.745
CD
O
1xd0 1 P04746 96.98 0.0 X-RAY
2004-12-07 PRO A:288 A:288 53.0 0.366 -53.8 139.6 53.0 0.366 0.0 HOH
4.199
C
O
1xd1 1 P04746 96.98 0.0 X-RAY
2004-12-07 PRO A:288 A:288 53.0 0.366 -55.3 139.1 53.0 0.366 0.0 HOH
4.046
C
O
2qmk 1 P04746 96.98 0.0 X-RAY
2008-03-25 PRO A:288 A:288 38.0 0.262 -62.9 137.9 38.0 0.262 0.0 HOH
3.777
CA
O
2qv4 1 P04746 96.98 0.0 X-RAY
2008-03-25 PRO A:288 A:288 38.0 0.262 -58.0 139.1 38.0 0.262 0.0 HOH
3.463
CB
O
3bai 1 P04746 96.98 0.0 X-RAY
2008-03-25 PRO A:288 A:288 46.0 0.317 -55.4 144.0 46.0 0.317 0.0 HOH
4.222
CG
O
3baj 1 P04746 96.98 0.0 X-RAY
2008-03-25 PRO A:288 A:288 49.0 0.338 -58.0 142.3 49.0 0.338 0.0 HOH
6.615
O
O
3baw 1 P04746 96.98 0.0 X-RAY
2008-03-25 PRO A:288 A:288 52.0 0.359 -57.8 142.6 52.0 0.359 0.0 HOH
3.927
CD
O
3ij7 1 P04746 96.98 0.0 X-RAY
2009-10-27 PRO A:288 A:288 51.0 0.352 -54.2 143.6 51.0 0.352 0.0 HOH
4.209
C
O
3ij8 1 P04746 96.98 0.0 X-RAY
2009-10-27 PRO A:288 A:288 50.0 0.345 -54.3 143.6 50.0 0.345 0.0 HOH
3.812
CD
O
3ij9 1 P04746 96.98 0.0 X-RAY
2009-10-27 PRO A:288 A:288 50.0 0.345 -53.5 144.2 50.0 0.345 0.0 HOH
4.163
C
O
4gqq 1 P04746 96.98 0.0 X-RAY
2012-10-24 PRO A:288 A:288 46.0 0.317 -59.8 145.6 46.0 0.317 0.0 0XR
HOH
3.460
4.358
CG
CB
O1'
O
4gqr 1 P04746 96.98 0.0 X-RAY
2012-10-24 PRO A:288 A:288 48.0 0.331 -57.8 142.0 48.0 0.331 0.0 HOH
3.223
CB
O
4w93 1 P04746 96.98 0.0 X-RAY
2015-07-15 PRO A:288 A:288 37.0 0.255 -52.5 142.6 37.0 0.255 0.0 HOH
3.610
CA
O
4x9y 1 P04746 96.98 0.0 X-RAY
2014-12-31 PRO A:288 A:288 35.0 0.241 -55.5 142.9 35.0 0.241 0.0 HOH
2.571
HD3
O
5e0f 1 P04746 96.98 0.0 X-RAY
2016-09-07 PRO A:288 A:288 37.0 0.255 -55.5 141.6 37.0 0.255 0.0 HOH
2.814
HG3
O
5emy 1 P04746 96.98 0.0 X-RAY
2016-07-06 PRO A:288 A:288 35.0 0.241 -54.2 142.4 35.0 0.241 0.0 HOH
2.674
HG3
O
5kez 1 P04746 96.98 0.0 X-RAY
2017-03-29 PRO A:288 A:288 44.0 0.303 -55.1 145.0 44.0 0.303 0.0 HOH
3.943
CB
O
5u3a 1 P04746 96.98 0.0 X-RAY
2017-12-06 PRO A:288 A:288 38.0 0.262 -55.5 143.8 38.0 0.262 0.0 HOH
2.604
HD3
O
5va9 1 P04746 96.98 0.0 X-RAY
2018-03-28 PRO A:288 A:288 45.0 0.31 -56.7 143.9 45.0 0.31 0.0 HOH
3.879
CA
O
PRO B:288 B:288 60.0 0.414 -56.5 142.1 NA NA NA
6obx 1 P04746 96.98 0.0 X-RAY
2020-02-12 PRO A:288 A:288 37.0 0.255 -54.9 144.1 37.0 0.255 0.0 HOH
2.569
HD3
O
6ocn 1 P04746 96.98 0.0 X-RAY
2020-02-12 PRO A:288 A:288 37.0 0.255 -55.7 142.7 37.0 0.255 0.0 HOH
2.615
HD3
O
1kgw 1 P04746 96.77 0.0 X-RAY
2002-01-16 PRO A:288 A:288 52.0 0.359 -53.3 141.9 52.0 0.359 0.0 HOH
6.400
CD
O
1xgz 1 P04746 96.77 0.0 X-RAY
2005-05-24 PRO A:288 A:288 50.0 0.345 -55.4 145.0 50.0 0.345 0.0 HOH
3.285
CB
O
1xh0 1 P04746 96.77 0.0 X-RAY
2005-05-24 PRO A:288 A:288 52.0 0.359 -53.8 140.5 52.0 0.359 0.0 HOH
4.164
CG
O
1xh1 1 P04746 96.77 0.0 X-RAY
2005-05-24 PRO A:288 A:288 45.0 0.31 -55.8 145.6 45.0 0.31 0.0 HOH
4.326
CA
O
1xh2 1 P04746 96.77 0.0 X-RAY
2005-05-24 PRO A:288 A:288 43.0 0.297 -54.9 145.7 43.0 0.297 0.0 HOH
3.455
CB
O
3bak 1 P04746 96.77 0.0 X-RAY
2008-03-25 PRO A:288 A:288 42.0 0.29 -57.3 144.2 42.0 0.29 0.0 HOH
3.944
C
O
3bax 1 P04746 96.77 0.0 X-RAY
2008-03-25 PRO A:288 A:288 35.0 0.241 -57.8 143.3 35.0 0.241 0.0 HOH
3.336
CD
O
3bay 1 P04746 96.77 0.0 X-RAY
2008-03-25 PRO A:288 A:288 48.0 0.331 -56.7 147.4 48.0 0.331 0.0 HOH
4.354
CB
O
1kgx 1 P04746 96.77 0.0 X-RAY
2002-01-16 PRO A:288 A:288 48.0 0.331 -55.4 142.6 48.0 0.331 0.0 HOH
2.829
CD
O
2cpu 1 P04746 96.77 0.0 X-RAY
2001-06-30 PRO A:288 A:288 49.0 0.338 -58.3 143.7 49.0 0.338 0.0 HOH
4.300
CB
O
3cpu 1 P04746 96.77 0.0 X-RAY
2001-06-30 PRO A:288 A:288 48.0 0.331 -53.6 142.3 48.0 0.331 0.0 HOH
4.297
C
O
5td4 1 P04746 96.77 0.0 X-RAY
2016-11-02 PRO A:288 A:288 50.0 0.345 -57.0 145.0 50.0 0.345 0.0 HOH
4.324
CD
O
1kgu 1 P04746 96.77 0.0 X-RAY
2002-01-16 PRO A:288 A:288 50.0 0.345 -51.2 142.5 50.0 0.345 0.0 HOH
4.211
CB
O
1kb3 1 P04746 96.77 0.0 X-RAY
2002-05-01 PRO A:288 A:288 51.0 0.352 -55.1 141.2 51.0 0.352 0.0 HOH
4.238
C
O
1kbb 1 P04746 96.77 0.0 X-RAY
2002-04-10 PRO A:288 A:288 50.0 0.345 -52.6 140.6 50.0 0.345 0.0 HOH
3.925
CD
O
1kbk 1 P04746 96.77 0.0 X-RAY
2002-04-10 PRO A:288 A:288 52.0 0.359 -55.5 139.5 52.0 0.359 0.0 HOH
4.221
C
O
1kxq 1 P00690 86.29 0.0 X-RAY
2002-06-19 PRO A:288 A:288 52.0 0.359 -57.5 139.7 52.0 0.359 0.0 HOH
3.444
N
O
PRO B:288 B:288 54.0 0.372 -59.3 139.1 NA NA NA
PRO C:288 C:288 56.0 0.386 -58.9 137.2 NA NA NA
PRO D:288 D:288 55.0 0.379 -58.1 141.5 NA NA NA
1kxt 1 P00690 86.29 0.0 X-RAY
2002-06-19 PRO A:288 A:288 52.0 0.359 -60.5 129.9 52.0 0.359 0.0 HOH
3.639
C
O
PRO C:288 C:288 52.0 0.359 -62.6 141.5 NA NA NA
PRO E:288 E:288 56.0 0.386 -56.9 136.5 NA NA NA
1kxv 1 P00690 86.29 0.0 X-RAY
2002-06-19 PRO A:288 A:288 61.0 0.421 -59.4 139.7 2.0 0.014 0.407 C:None:0.407
HOH
2.799
CG
O
PRO B:288 B:288 51.0 0.352 -55.0 140.5 NA NA NA
1dhk 1 P00690 86.29 0.0 X-RAY
1997-12-24 PRO A:288 A:288 52.0 0.359 -57.0 136.8 52.0 0.359 0.0 HOH
5.348
O
H2
1ppi 1 P00690 86.29 0.0 X-RAY
1995-05-24 PRO A:288 A:288 54.0 0.372 -51.5 142.6 54.0 0.372 0.0 HOH
3.546
CB
O
1vah 1 P00690 86.09 0.0 X-RAY
2005-04-26 PRO A:288 A:288 46.0 0.317 -56.6 146.4 46.0 0.317 0.0 HOH
3.772
CB
O
3l2l 1 P00690 86.09 0.0 X-RAY
2010-04-14 PRO A:288 A:288 48.0 0.331 -62.3 144.0 48.0 0.331 0.0 HOH
3.058
HB3
O
3l2m 1 P00690 86.09 0.0 X-RAY
2010-04-14 PRO A:288 A:288 53.0 0.366 -62.8 146.0 53.0 0.366 0.0 HOH
3.149
HB2
O
1ua3 1 P00690 86.09 0.0 X-RAY
2003-10-14 PRO A:288 A:288 40.0 0.276 -57.1 142.2 40.0 0.276 0.0 HOH
3.568
CD
O
1ose 1 P00690 85.89 0.0 X-RAY
1997-04-01 PRO A:288 A:288 45.0 0.31 -59.6 138.4 45.0 0.31 0.0 HOH
3.743
CB
O
1jfh 1 P00690 86.09 0.0 X-RAY
1998-12-02 PRO A:288 A:288 47.0 0.324 -58.8 145.6 47.0 0.324 0.0 HOH
3.708
CB
O
1hx0 1 P00690 85.89 0.0 X-RAY
2001-08-08 PRO A:288 A:288 36.0 0.248 -57.2 140.8 36.0 0.248 0.0 HOH
3.588
CB
O
1wo2 1 P00690 85.89 0.0 X-RAY
2005-03-15 PRO A:288 A:288 38.0 0.262 -58.7 144.9 38.0 0.262 0.0 HOH
3.451
CD
O
1pif 1 P00690 85.69 0.0 X-RAY
1996-12-07 PRO A:288 A:288 54.0 0.372 -57.7 144.3 54.0 0.372 0.0 HOH
3.574
CB
O
1pig 1 P00690 85.69 0.0 X-RAY
1996-12-07 PRO A:288 A:288 52.0 0.359 -59.0 140.9 52.0 0.359 0.0 HOH
3.570
CB
O
4x0n 1 P00690 85.69 0.0 X-RAY
2015-11-25 PRO A:288 A:288 58.0 0.4 -56.3 141.1 58.0 0.4 0.0 HOH
3.502
CB
O
1bvn 1 P00690 85.48 0.0 X-RAY
1998-09-23 PRO A:288 P:288 50.0 0.345 -62.3 137.5 50.0 0.345 0.0 HOH
3.780
CB
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p0dte7-f1 1 P0DTE7 100.0 0.0 PRO A:303 A:303 43.0 0.297 -53.4 136.8
af-p0dte8-f1 1 P0DTE8 100.0 0.0 PRO A:303 A:303 44.0 0.303 -53.6 137.1
af-p0dub6-f1 1 P0DUB6 100.0 0.0 PRO A:303 A:303 45.0 0.31 -52.9 137.1
af-p19961-f1 1 P19961 97.46 0.0 PRO A:303 A:303 43.0 0.297 -53.7 136.7
af-p04746-f1 1 P04746 96.87 0.0 PRO A:303 A:303 43.0 0.297 -53.1 138.7