Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104207120 . T A CCDS30782.1:NM_001008221.1:c.1514aTt>aAt_NP_001008222.1:p.505I>N Homo sapiens amylase, alpha 1A (salivary) (AMY1A), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1c8q 1 P04745 99.8 0.0 X-RAY
2001-06-13 ILE A:490 A:490 0.0 0.0 E -139.5 152.0 0.0 0.0 0.0 HOH
7.140
C
O
1mfv 1 P04745 99.8 0.0 X-RAY
2002-11-20 ILE A:490 A:490 1.0 0.006 E -134.3 152.6 1.0 0.006 0.0 HOH
7.459
C
O
1smd 1 P04745 99.8 0.0 X-RAY
1996-07-11 ILE A:490 A:490 0.0 0.0 E -128.2 153.0 0.0 0.0 0.0 HOH
7.339
C
O
1xv8 1 P04745 99.8 0.0 X-RAY
2005-10-11 ILE A:490 A:490 1.0 0.006 E -133.9 156.2 1.0 0.006 0.0 HOH
8.419
CG2
O
ILE B:490 B:490 1.0 0.006 E -133.9 156.2 1.0 0.006 0.0 HOH
8.419
CG2
O
1q4n 1 P04745 99.6 0.0 X-RAY
2004-03-16 ILE A:490 X:490 1.0 0.006 E -136.0 155.0 1.0 0.006 0.0 HOH
7.286
C
O
1z32 1 P04745 99.6 0.0 X-RAY
2005-05-31 ILE A:490 X:490 0.0 0.0 E -131.2 150.7 0.0 0.0 0.0 HOH
7.458
C
O
1jxj 1 P04745 99.6 0.0 X-RAY
2001-09-14 ILE A:490 A:490 0.0 0.0 E -134.4 153.0 0.0 0.0 0.0 HOH
7.513
C
O
1nm9 1 P04745 99.6 0.0 X-RAY
2004-01-20 ILE A:490 A:490 0.0 0.0 E -132.8 150.7 0.0 0.0 0.0 HOH
7.341
C
O
3blk 1 P04745 99.6 0.0 X-RAY
2008-11-25 ILE A:490 A:490 1.0 0.006 E -131.3 151.5 1.0 0.006 0.0 HOH
7.586
C
O
3blp 1 P04745 99.6 0.0 X-RAY
2008-11-18 ILE A:490 X:490 1.0 0.006 E -130.9 149.6 1.0 0.006 0.0 HOH
6.857
CG2
O
1jxk 1 P04745 98.79 0.0 X-RAY
2001-09-14 ILE A:485 A:485 1.0 0.006 E -132.4 154.6 1.0 0.006 0.0 HOH
7.402
CG2
O
1mfu 1 P04745 98.79 0.0 X-RAY
2002-11-20 ILE A:485 A:485 0.0 0.0 E -133.5 152.1 0.0 0.0 0.0 HOH
7.445
C
O
3dhp 1 P04745 98.59 0.0 X-RAY
2008-07-01 ILE A:490 A:490 1.0 0.006 E -132.1 153.0 1.0 0.006 0.0 HOH
7.504
C
O
3old 1 P04746 97.38 0.0 X-RAY
2011-04-13 ILE A:490 A:490 1.0 0.006 E -133.5 151.6 1.0 0.006 0.0 HOH
7.535
CG2
O
3ole 1 P04746 97.38 0.0 X-RAY
2011-04-13 ILE A:490 A:490 0.0 0.0 E -133.5 149.4 0.0 0.0 0.0 HOH
7.330
C
O
3olg 1 P04746 97.38 0.0 X-RAY
2011-04-13 ILE A:490 A:490 0.0 0.0 E -133.0 151.7 0.0 0.0 0.0 HOH
7.266
C
O
3oli 1 P04746 97.38 0.0 X-RAY
2011-04-13 ILE A:490 A:490 0.0 0.0 E -134.8 151.4 0.0 0.0 0.0 HOH
7.343
C
O
6z8l 1 P04746 97.18 0.0 X-RAY
2020-12-02 ILE A:490 A:490 1.0 0.006 E -132.8 151.5 1.0 0.006 0.0 HOH
6.727
HG22
O
1b2y 1 P04746 97.18 0.0 X-RAY
2000-02-16 ILE A:490 A:490 0.0 0.0 E -132.1 148.0 0.0 0.0 0.0 HOH
7.689
CG2
O
1bsi 1 P04746 96.98 0.0 X-RAY
1999-05-18 ILE A:490 A:490 0.0 0.0 E -132.6 145.7 0.0 0.0 0.0 HOH
7.532
CG2
O
1cpu 1 P04746 96.98 0.0 X-RAY
1999-06-14 ILE A:490 A:490 0.0 0.0 E -133.6 147.5 0.0 0.0 0.0 HOH
7.399
CG2
O
1hny 1 P04746 96.98 0.0 X-RAY
1996-03-08 ILE A:490 A:490 0.0 0.0 E -130.4 148.0 0.0 0.0 0.0 HOH
7.372
C
O
1u2y 1 P04746 96.98 0.0 X-RAY
2004-09-07 ILE A:490 A:490 0.0 0.0 E -135.9 147.6 0.0 0.0 0.0 HOH
7.440
CG2
O
1u30 1 P04746 96.98 0.0 X-RAY
2004-09-07 ILE A:490 A:490 0.0 0.0 E -128.1 144.1 0.0 0.0 0.0 HOH
7.378
CG2
O
1u33 1 P04746 96.98 0.0 X-RAY
2004-09-07 ILE A:490 A:490 0.0 0.0 E -134.6 151.6 0.0 0.0 0.0 HOH
7.246
CG2
O
1xcw 1 P04746 96.98 0.0 X-RAY
2004-12-07 ILE A:490 A:490 0.0 0.0 E -133.2 145.1 0.0 0.0 0.0 HOH
7.568
CG2
O
1xcx 1 P04746 96.98 0.0 X-RAY
2004-12-07 ILE A:490 A:490 0.0 0.0 E -133.4 149.6 0.0 0.0 0.0 HOH
7.462
C
O
1xd0 1 P04746 96.98 0.0 X-RAY
2004-12-07 ILE A:490 A:490 0.0 0.0 E -132.2 149.2 0.0 0.0 0.0 HOH
7.473
CG2
O
1xd1 1 P04746 96.98 0.0 X-RAY
2004-12-07 ILE A:490 A:490 1.0 0.006 E -131.9 150.8 1.0 0.006 0.0 HOH
7.285
C
O
2qmk 1 P04746 96.98 0.0 X-RAY
2008-03-25 ILE A:490 A:490 0.0 0.0 E -128.0 142.8 0.0 0.0 0.0 HOH
7.231
C
O
2qv4 1 P04746 96.98 0.0 X-RAY
2008-03-25 ILE A:490 A:490 0.0 0.0 E -130.8 146.1 0.0 0.0 0.0 HOH
7.324
C
O
3bai 1 P04746 96.98 0.0 X-RAY
2008-03-25 ILE A:490 A:490 0.0 0.0 E -135.4 147.8 0.0 0.0 0.0 HOH
7.419
CG2
O
3baj 1 P04746 96.98 0.0 X-RAY
2008-03-25 ILE A:490 A:490 1.0 0.006 E -135.1 146.3 1.0 0.006 0.0 HOH
7.397
C
O
3baw 1 P04746 96.98 0.0 X-RAY
2008-03-25 ILE A:490 A:490 0.0 0.0 E -131.4 151.9 0.0 0.0 0.0 HOH
7.247
C
O
3ij7 1 P04746 96.98 0.0 X-RAY
2009-10-27 ILE A:490 A:490 0.0 0.0 E -135.0 146.6 0.0 0.0 0.0 HOH
7.427
CG2
O
3ij8 1 P04746 96.98 0.0 X-RAY
2009-10-27 ILE A:490 A:490 0.0 0.0 E -133.6 148.2 0.0 0.0 0.0 HOH
7.351
CG2
O
3ij9 1 P04746 96.98 0.0 X-RAY
2009-10-27 ILE A:490 A:490 0.0 0.0 E -136.5 144.8 0.0 0.0 0.0 HOH
7.388
CG2
O
4gqq 1 P04746 96.98 0.0 X-RAY
2012-10-24 ILE A:490 A:490 0.0 0.0 E -130.6 150.6 0.0 0.0 0.0 HOH
6.963
O
O
4gqr 1 P04746 96.98 0.0 X-RAY
2012-10-24 ILE A:490 A:490 0.0 0.0 E -132.9 149.2 0.0 0.0 0.0 HOH
7.338
CG2
O
4w93 1 P04746 96.98 0.0 X-RAY
2015-07-15 ILE A:490 A:490 0.0 0.0 E -135.0 152.1 0.0 0.0 0.0 HOH
7.352
C
O
4x9y 1 P04746 96.98 0.0 X-RAY
2014-12-31 ILE A:490 A:490 0.0 0.0 E -134.0 150.4 0.0 0.0 0.0 HOH
6.662
HG22
O
5e0f 1 P04746 96.98 0.0 X-RAY
2016-09-07 ILE A:490 A:490 1.0 0.006 E -132.9 154.0 1.0 0.006 0.0 HOH
6.686
HA
O
5emy 1 P04746 96.98 0.0 X-RAY
2016-07-06 ILE A:490 A:490 0.0 0.0 E -135.4 150.9 0.0 0.0 0.0 HOH
6.594
HG22
O
5kez 1 P04746 96.98 0.0 X-RAY
2017-03-29 ILE A:490 A:490 0.0 0.0 E -132.5 152.7 0.0 0.0 0.0 HOH
7.324
C
O
5u3a 1 P04746 96.98 0.0 X-RAY
2017-12-06 ILE A:490 A:490 0.0 0.0 E -133.9 150.2 0.0 0.0 0.0 HOH
6.634
HG22
O
5va9 1 P04746 96.98 0.0 X-RAY
2018-03-28 ILE A:490 A:490 0.0 0.0 E -129.7 150.0 0.0 0.0 0.0 HOH
7.313
C
O
ILE B:490 B:490 0.0 0.0 E -130.3 148.6 NA NA NA
6obx 1 P04746 96.98 0.0 X-RAY
2020-02-12 ILE A:490 A:490 0.0 0.0 E -134.0 150.2 0.0 0.0 0.0 HOH
6.621
HG22
O
6ocn 1 P04746 96.98 0.0 X-RAY
2020-02-12 ILE A:490 A:490 0.0 0.0 E -134.2 151.6 0.0 0.0 0.0 HOH
6.637
HG22
O
1kgw 1 P04746 96.77 0.0 X-RAY
2002-01-16 ILE A:490 A:490 0.0 0.0 E -133.9 148.4 0.0 0.0 0.0 HOH
7.510
C
O
1xgz 1 P04746 96.77 0.0 X-RAY
2005-05-24 ILE A:490 A:490 0.0 0.0 E -134.5 147.6 0.0 0.0 0.0 HOH
7.472
C
O
1xh0 1 P04746 96.77 0.0 X-RAY
2005-05-24 ILE A:490 A:490 0.0 0.0 E -134.0 149.8 0.0 0.0 0.0 HOH
7.415
CG2
O
1xh1 1 P04746 96.77 0.0 X-RAY
2005-05-24 ILE A:490 A:490 0.0 0.0 E -137.9 144.3 0.0 0.0 0.0 HOH
7.377
C
O
1xh2 1 P04746 96.77 0.0 X-RAY
2005-05-24 ILE A:490 A:490 0.0 0.0 E -133.6 147.3 0.0 0.0 0.0 HOH
7.482
C
O
3bak 1 P04746 96.77 0.0 X-RAY
2008-03-25 ILE A:490 A:490 0.0 0.0 E -132.4 145.9 0.0 0.0 0.0 HOH
7.470
C
O
3bax 1 P04746 96.77 0.0 X-RAY
2008-03-25 ILE A:490 A:490 1.0 0.006 E -133.4 150.1 1.0 0.006 0.0 HOH
7.282
C
O
3bay 1 P04746 96.77 0.0 X-RAY
2008-03-25 ILE A:490 A:490 1.0 0.006 E -131.3 145.2 1.0 0.006 0.0 HOH
7.312
CG2
O
1kgx 1 P04746 96.77 0.0 X-RAY
2002-01-16 ILE A:490 A:490 0.0 0.0 E -141.2 146.6 0.0 0.0 0.0 HOH
2.915
CD1
O
2cpu 1 P04746 96.77 0.0 X-RAY
2001-06-30 ILE A:490 A:490 0.0 0.0 E -135.4 149.9 0.0 0.0 0.0 HOH
7.397
CG2
O
3cpu 1 P04746 96.77 0.0 X-RAY
2001-06-30 ILE A:490 A:490 0.0 0.0 E -136.4 147.9 0.0 0.0 0.0 HOH
7.318
C
O
5td4 1 P04746 96.77 0.0 X-RAY
2016-11-02 ILE A:490 A:490 0.0 0.0 E -135.4 154.1 0.0 0.0 0.0 HOH
7.199
CD1
O
1kgu 1 P04746 96.77 0.0 X-RAY
2002-01-16 ILE A:490 A:490 1.0 0.006 E -135.5 148.1 1.0 0.006 0.0 HOH
7.485
C
O
1kb3 1 P04746 96.77 0.0 X-RAY
2002-05-01 ILE A:490 A:490 0.0 0.0 E -133.5 146.3 0.0 0.0 0.0 HOH
7.449
CG2
O
1kbb 1 P04746 96.77 0.0 X-RAY
2002-04-10 ILE A:490 A:490 0.0 0.0 E -135.6 150.1 0.0 0.0 0.0 HOH
7.324
C
O
1kbk 1 P04746 96.77 0.0 X-RAY
2002-04-10 ILE A:490 A:490 0.0 0.0 E -135.8 148.3 0.0 0.0 0.0 HOH
7.351
CG2
O
1kxq 1 P00690 86.29 0.0 X-RAY
2002-06-19 ILE A:490 A:490 0.0 0.0 E -134.7 150.0 0.0 0.0 0.0 HOH
7.339
C
O
ILE B:490 B:490 1.0 0.006 E -137.3 150.8 NA NA NA
ILE C:490 C:490 2.0 0.011 E -136.0 152.9 NA NA NA
ILE D:490 D:490 1.0 0.006 E -135.9 152.1 NA NA NA
1kxt 1 P00690 86.29 0.0 X-RAY
2002-06-19 ILE A:490 A:490 2.0 0.011 E -144.2 150.5 2.0 0.011 0.0 HOH
2.273
CG1
O
ILE C:490 C:490 1.0 0.006 E -143.3 150.6 NA NA NA
ILE E:490 E:490 0.0 0.0 E -142.7 149.6 NA NA NA
1kxv 1 P00690 86.29 0.0 X-RAY
2002-06-19 ILE A:490 A:490 1.0 0.006 E -137.9 154.2 1.0 0.006 0.0 HOH
7.362
CG2
O
ILE B:490 B:490 0.0 0.0 E -136.4 152.9 NA NA NA
1dhk 1 P00690 86.29 0.0 X-RAY
1997-12-24 ILE A:490 A:490 1.0 0.006 E -134.0 151.9 1.0 0.006 0.0 HOH
6.967
C
H1
1ppi 1 P00690 86.29 0.0 X-RAY
1995-05-24 ILE A:490 A:490 0.0 0.0 E -132.6 153.2 0.0 0.0 0.0 HOH
7.424
C
O
1vah 1 P00690 86.09 0.0 X-RAY
2005-04-26 ILE A:490 A:490 1.0 0.006 E -127.8 155.4 1.0 0.006 0.0 HOH
7.707
CG2
O
3l2l 1 P00690 86.09 0.0 X-RAY
2010-04-14 ILE A:490 A:490 0.0 0.0 E -131.8 148.7 0.0 0.0 0.0 HOH
6.744
HG21
O
3l2m 1 P00690 86.09 0.0 X-RAY
2010-04-14 ILE A:490 A:490 0.0 0.0 E -130.8 150.9 0.0 0.0 0.0 HOH
6.775
HG21
O
1ua3 1 P00690 86.09 0.0 X-RAY
2003-10-14 ILE A:490 A:490 0.0 0.0 E -136.7 152.2 0.0 0.0 0.0 EDO
EDO
HOH
8.355
7.391
7.275
CD1
CG2
C
O1
C2
O
1ose 1 P00690 85.89 0.0 X-RAY
1997-04-01 ILE A:490 A:490 0.0 0.0 E -135.6 153.5 0.0 0.0 0.0 HOH
7.658
CG2
O
1jfh 1 P00690 86.09 0.0 X-RAY
1998-12-02 ILE A:490 A:490 0.0 0.0 E -133.0 146.7 0.0 0.0 0.0 HOH
7.539
C
O
1hx0 1 P00690 85.89 0.0 X-RAY
2001-08-08 ILE A:490 A:490 1.0 0.006 E -133.4 149.8 1.0 0.006 0.0 EDO
EDO
HOH
7.232
8.367
7.461
CG2
CD1
C
C2
O1
O
1wo2 1 P00690 85.89 0.0 X-RAY
2005-03-15 ILE A:490 A:490 0.0 0.0 E -134.3 149.1 0.0 0.0 0.0 EDO
EDO
HOH
8.374
7.216
7.351
CD1
CG2
C
O1
C2
O
1pif 1 P00690 85.69 0.0 X-RAY
1996-12-07 ILE A:490 A:490 1.0 0.006 E -131.3 152.9 1.0 0.006 0.0 HOH
7.717
CG2
O
1pig 1 P00690 85.69 0.0 X-RAY
1996-12-07 ILE A:490 A:490 1.0 0.006 E -135.2 154.3 1.0 0.006 0.0 HOH
7.431
CG2
O
4x0n 1 P00690 85.69 0.0 X-RAY
2015-11-25 ILE A:490 A:490 1.0 0.006 E -133.5 150.3 1.0 0.006 0.0 HOH
7.208
C
O
1bvn 1 P00690 85.48 0.0 X-RAY
1998-09-23 ILE A:490 P:490 1.0 0.006 E -152.8 161.9 1.0 0.006 0.0 HOH
7.238
CD1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p0dte7-f1 1 P0DTE7 100.0 0.0 ILE A:505 A:505 0.0 0.0 E -130.6 145.6
af-p0dte8-f1 1 P0DTE8 100.0 0.0 ILE A:505 A:505 0.0 0.0 E -132.2 145.6
af-p0dub6-f1 1 P0DUB6 100.0 0.0 ILE A:505 A:505 0.0 0.0 E -133.1 145.9
af-p19961-f1 1 P19961 97.46 0.0 ILE A:505 A:505 0.0 0.0 E -132.0 145.9
af-p04746-f1 1 P04746 96.87 0.0 ILE A:505 A:505 0.0 0.0 E -133.7 146.4