Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 115828856 . G A CCDS882.1:NM_002506.2:c.561agC>agT_NP_002497.2:p.187S>S Homo sapiens nerve growth factor (NGF), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6xuo 1 F6SVV7 94.62 8e-146 X-RAY
2020-01-29 SER A:170 A:66 28.0 0.243 T -43.2 137.4 28.0 0.243 0.0
3ij2 1 P01139 82.19 2e-135 X-RAY
2010-01-12 SER A:169 A:66 43.0 0.374 T -80.4 -16.1 43.0 0.374 0.0
SER C:169 B:66 44.0 0.383 T -80.2 -17.4 44.0 0.383 0.0
1sg1 1 P01138 100.0 1e-87 X-RAY
2004-06-01 SER A:66 NA:NA DO NA DO DO DO NA NA NA
SER B:66 NA:NA DO NA DO DO DO NA NA NA
1www 1 P01138 100.0 1e-87 X-RAY
1999-09-15 SER A:66 NA:NA DO NA DO DO DO NA NA NA
SER B:66 NA:NA DO NA DO DO DO NA NA NA
2ifg 2 P01138 100.0 1e-87 X-RAY
2007-02-13 SER C:66 NA:NA DO NA DO DO DO NA NA NA
SER D:66 NA:NA DO NA DO DO DO NA NA NA
4edw 1 P01138 100.0 1e-87 X-RAY
2014-04-02 SER A:66 NA:NA DO NA DO DO DO NA NA NA
4edx 1 P01138 100.0 1e-87 X-RAY
2014-04-02 SER A:66 W:66 189.0 1.0 360.0 15.8 189.0 1.0 0.0
SER D:66 NA:NA DO NA DO DO DO NA NA NA
4zbn 2 P01138 100.0 1e-87 X-RAY
2015-06-10 SER C:66 A:66 166.0 1.0 360.0 166.6 166.0 1.0 0.0 DUZ
HOH
8.875
2.765
CB
O
O4
O
SER D:66 B:66 171.0 1.0 360.0 -126.4 171.0 1.0 0.0
6yw8 1 P01138 100.0 4e-86 NMR
2021-05-12 SER A:66 A:66 110.0 0.957 T -70.1 -69.6 110.0 0.957 0.0
SER B:66 B:66 111.0 0.965 T -70.4 -69.6 111.0 0.965 0.0
4efv 1 ? 97.37 4e-81 X-RAY
2012-08-22 SER A:66 NA:NA DO NA DO DO DO NA NA NA
SER B:66 B:66 75.0 0.652 S -163.5 166.2 75.0 0.652 0.0 HOH
5.151
O
O
5jz7 1 P01138 100.0 4e-80 X-RAY
2017-01-11 SER A:60 A:66 46.0 0.4 T -74.8 -22.8 46.0 0.4 0.0
SER B:60 B:66 48.0 0.417 S -69.6 -35.7 48.0 0.417 0.0
SER E:60 E:66 56.0 0.487 T -60.7 -46.4 NA NA NA
SER F:60 F:66 50.0 0.435 S -69.6 -36.7 NA NA NA
4eax 1 P01139 89.17 1e-77 X-RAY
2012-09-12 SER A:66 A:66 51.0 0.443 T -88.5 22.7 51.0 0.443 0.0
SER B:66 B:66 54.0 0.47 T -67.8 -22.2 54.0 0.47 0.0
SER C:66 C:66 63.0 0.548 T -79.8 24.3 NA NA NA
SER D:66 D:66 51.0 0.443 T -57.0 -16.4 NA NA NA
4xpj 1 P01139 89.17 1e-77 X-RAY
2015-07-15 SER A:66 A:66 52.0 0.452 T -68.7 3.9 52.0 0.452 0.0 HOH
3.604
OG
O
SER B:66 B:66 60.0 0.522 T -53.5 -38.1 60.0 0.522 0.0 HOH
6.461
OG
O
1sgf 2 P01139 89.83 8e-77 X-RAY
1998-05-27 SER B:66 B:66 36.0 0.313 T -101.1 -11.7 27.0 0.235 0.078 C:P00756:0.078
NAG
NAG
6.739
7.963
O
O
O6
C8
SER E:66 Y:66 53.0 0.461 T -68.3 3.4 32.0 0.278 0.183 F:P00756:0.183
NAG
NAG
7.960
9.735
C
C
O6
O7
5lsd 1 P01139 89.83 8e-77 NMR
2017-07-05 SER A:66 A:66 56.0 0.487 T -179.5 -33.3 56.0 0.487 0.0
SER B:66 B:66 56.0 0.487 T -179.7 -33.2 56.0 0.487 0.0
6ffy 2 P01139 90.43 4e-75 X-RAY
2018-08-01 SER B:66 B:187 67.0 0.583 T -102.8 54.4 67.0 0.583 0.0
SER C:66 C:187 51.0 0.443 T -92.3 48.9 51.0 0.443 0.0
1btg 1 P01139 91.74 4e-71 X-RAY
1996-03-08 SER A:58 A:66 73.0 0.635 T -69.4 -11.1 72.0 0.626 0.009 B:P01139:0.009
HOH
6.977
N
O
SER B:58 B:66 55.0 0.478 S -53.9 -34.3 55.0 0.478 0.0
SER C:58 C:66 59.0 0.513 T -82.2 -10.6 59.0 0.513 0.0 HOH
8.317
O
O
1bet 1 P01139 92.52 2e-70 X-RAY
1994-05-31 SER A:57 A:66 57.0 0.496 T -82.4 -7.8 57.0 0.496 0.0 HOH
2.797
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p01138-f1 1 P01138 100.0 0.0 SER A:187 A:187 54.0 0.47 T -88.9 3.8