Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 115828894 | . | A | C | CCDS882.1:NM_002506.2:c.523Ttt>Gtt_NP_002497.2:p.175F>V | Homo sapiens nerve growth factor (NGF), mRNA. |
---|---|---|---|---|---|---|---|
|
|
|
|
PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6xuo | 1 | F6SVV7 | 94.62 | 8e-146 |
X-RAY |
2020-01-29 | PHE | A:158 | A:54 | 102.0 | 0.486 | E | -100.8 | 111.2 | 31.0 | 0.148 | 0.338 |
A:F6SVV7:0.338 |
|||||
3ij2 | 1 | P01139 | 82.19 | 2e-135 |
X-RAY |
2010-01-12 | PHE | A:157 | A:54 | 93.0 | 0.443 | E | -111.8 | 100.4 | 34.0 | 0.162 | 0.281 |
C:P01139:0.281 |
|||||
PHE | C:157 | B:54 | 90.0 | 0.429 | E | -110.6 | 98.8 | 34.0 | 0.162 | 0.267 |
B:P07174:0.005 A:P01139:0.267 |
||||||||||||
1sg1 | 1 | P01138 | 100.0 | 1e-87 |
X-RAY |
2004-06-01 | PHE | A:54 | A:54 | 91.0 | 0.433 | E | -86.0 | 110.1 | 28.0 | 0.133 | 0.3 |
B:P01138:0.3 |
HOH |
2.512 |
N |
O |
|
PHE | B:54 | B:54 | 95.0 | 0.452 | E | -85.8 | 105.7 | 35.0 | 0.167 | 0.285 |
A:P01138:0.286 |
HOH |
2.924 |
N |
O |
||||||||
1www | 1 | P01138 | 100.0 | 1e-87 |
X-RAY |
1999-09-15 | PHE | A:54 | V:54 | 103.0 | 0.49 | E | -89.0 | 113.5 | 4.0 | 0.019 | 0.471 |
D:P04629:0.176 B:P01138:0.352 |
HOH |
3.058 |
N |
O |
|
PHE | B:54 | W:54 | 111.0 | 0.529 | E | -90.8 | 114.2 | 5.0 | 0.024 | 0.505 |
A:P01138:0.371 C:P04629:0.214 |
HOH |
2.780 |
O |
O |
||||||||
2ifg | 2 | P01138 | 100.0 | 1e-87 |
X-RAY |
2007-02-13 | PHE | C:54 | E:54 | 115.0 | 0.548 | E | -89.0 | 113.6 | 8.0 | 0.038 | 0.51 |
D:P01138:0.381 A:P04629:0.195 |
|||||
PHE | D:54 | F:54 | 112.0 | 0.533 | E | -90.9 | 114.1 | 3.0 | 0.014 | 0.519 |
C:P01138:0.376 B:P04629:0.224 |
||||||||||||
4edw | 1 | P01138 | 100.0 | 1e-87 |
X-RAY |
2014-04-02 | PHE | A:54 | V:54 | 102.0 | 0.486 | E | -106.2 | 124.2 | 46.0 | 0.219 | 0.267 |
C:None:0.267 |
HOH |
5.229 |
CE1 |
O |
|
4edx | 1 | P01138 | 100.0 | 1e-87 |
X-RAY |
2014-04-02 | PHE | A:54 | W:54 | 111.0 | 0.529 | E | -95.1 | 118.0 | 1.0 | 0.005 | 0.524 |
C:None:0.276 D:P01138:0.371 |
HOH |
4.018 |
CD1 |
O |
|
PHE | D:54 | V:54 | 117.0 | 0.557 | E | -96.0 | 118.0 | 2.0 | 0.01 | 0.547 |
F:None:0.295 A:P01138:0.386 |
HOH |
4.214 |
CD1 |
O |
||||||||
4zbn | 2 | P01138 | 100.0 | 1e-87 |
X-RAY |
2015-06-10 | PHE | C:54 | A:54 | 102.0 | 0.486 | E | -93.9 | 117.7 | 34.0 | 0.162 | 0.324 |
D:P01138:0.324 |
DG DG DG DUZ DC DC DG DUZ HOH |
9.022 7.174 8.634 7.004 9.112 3.460 3.496 7.595 2.904 |
CE1 CE1 CE1 CD1 CE1 CZ CZ CZ N |
N2 N2 N2 C24 O2 O3' OP1 O4 O |
|
PHE | D:54 | B:54 | 101.0 | 0.481 | E | -93.5 | 122.7 | 32.0 | 0.152 | 0.329 |
C:P01138:0.329 |
DG DG DG DUZ DC DC DG DUZ HOH |
9.289 7.248 8.689 6.879 8.756 3.451 3.567 7.963 2.810 |
CE1 CE1 CE1 CD1 CE1 CZ CZ CZ O |
N2 N2 N2 C24 O2 O3' OP1 O4 O |
||||||||
6yw8 | 1 | P01138 | 100.0 | 4e-86 |
NMR |
2021-05-12 | PHE | A:54 | A:54 | 67.0 | 0.319 | E | -106.1 | 113.6 | 8.0 | 0.038 | 0.281 |
B:P01138:0.281 |
|||||
PHE | B:54 | B:54 | 66.0 | 0.314 | E | -105.9 | 113.4 | 7.0 | 0.033 | 0.281 |
A:P01138:0.281 |
||||||||||||
4efv | 1 | ? | 97.37 | 4e-81 |
X-RAY |
2012-08-22 | PHE | A:54 | A:54 | 106.0 | 0.505 | E | -92.9 | 111.9 | 36.0 | 0.171 | 0.334 |
B:None:0.333 |
HOH |
2.438 |
O |
O |
|
PHE | B:54 | B:54 | 99.0 | 0.471 | E | -94.2 | 107.0 | 32.0 | 0.152 | 0.319 |
A:None:0.319 |
HOH |
2.645 |
O |
O |
||||||||
5jz7 | 1 | P01138 | 100.0 | 4e-80 |
X-RAY |
2017-01-11 | PHE | A:48 | A:54 | 100.0 | 0.476 | E | -90.2 | 102.0 | 6.0 | 0.029 | 0.447 |
C:None:0.152 B:P01138:0.352 |
|||||
PHE | B:48 | B:54 | 100.0 | 0.476 | E | -90.7 | 102.2 | 6.0 | 0.029 | 0.447 |
A:P01138:0.357 H:None:0.162 |
||||||||||||
PHE | E:48 | E:54 | 94.0 | 0.448 | E | -90.6 | 102.4 | NA | NA | NA | |||||||||||||
PHE | F:48 | F:54 | 98.0 | 0.467 | E | -90.5 | 101.9 | NA | NA | NA | |||||||||||||
4eax | 1 | P01139 | 89.17 | 1e-77 |
X-RAY |
2012-09-12 | PHE | A:54 | A:54 | 101.0 | 0.481 | E | -88.4 | 105.3 | 31.0 | 0.148 | 0.333 |
B:P01139:0.333 |
HOH |
3.804 |
CE2 |
O |
|
PHE | B:54 | B:54 | 98.0 | 0.467 | E | -85.3 | 101.1 | 33.0 | 0.157 | 0.31 |
A:P01139:0.31 |
HOH |
8.087 |
N |
O |
||||||||
PHE | C:54 | C:54 | 107.0 | 0.51 | E | -92.8 | 112.3 | NA | NA | NA | |||||||||||||
PHE | D:54 | D:54 | 94.0 | 0.448 | E | -81.1 | 104.8 | NA | NA | NA | |||||||||||||
4xpj | 1 | P01139 | 89.17 | 1e-77 |
X-RAY |
2015-07-15 | PHE | A:54 | A:54 | 99.0 | 0.471 | E | -97.4 | 110.6 | 29.0 | 0.138 | 0.333 |
B:P01139:0.333 |
HOH |
3.883 |
CD2 |
O |
|
PHE | B:54 | B:54 | 91.0 | 0.433 | E | -105.4 | 110.9 | 31.0 | 0.148 | 0.285 |
A:P01139:0.286 |
HOH |
3.767 |
CE1 |
O |
||||||||
1sgf | 2 | P01139 | 89.83 | 8e-77 |
X-RAY |
1998-05-27 | PHE | B:54 | B:54 | 100.0 | 0.476 | E | -89.9 | 114.6 | 6.0 | 0.029 | 0.447 |
E:P01139:0.319 D:P00757:0.167 |
|||||
PHE | E:54 | Y:54 | 101.0 | 0.481 | E | -88.2 | 112.5 | 6.0 | 0.029 | 0.452 |
B:P01139:0.329 A:P00757:0.2 |
||||||||||||
5lsd | 1 | P01139 | 89.83 | 8e-77 |
NMR |
2017-07-05 | PHE | A:54 | A:54 | 81.0 | 0.386 | E | -84.4 | 94.9 | 11.0 | 0.052 | 0.334 |
B:P01139:0.333 |
|||||
PHE | B:54 | B:54 | 85.0 | 0.405 | E | -84.4 | 95.0 | 12.0 | 0.057 | 0.348 |
A:P01139:0.348 |
||||||||||||
6ffy | 2 | P01139 | 90.43 | 4e-75 |
X-RAY |
2018-08-01 | PHE | B:54 | B:175 | 98.0 | 0.467 | E | -91.4 | 105.8 | 18.0 | 0.086 | 0.381 |
C:P01139:0.3 A:Q9EPR5:0.095 |
|||||
PHE | C:54 | C:175 | 104.0 | 0.495 | E | -98.5 | 104.5 | 40.0 | 0.19 | 0.305 |
B:P01139:0.305 |
||||||||||||
1btg | 1 | P01139 | 91.74 | 4e-71 |
X-RAY |
1996-03-08 | PHE | A:46 | A:54 | 95.0 | 0.452 | E | -107.5 | 108.9 | 95.0 | 0.452 | 0.0 |
HOH |
3.514 |
N |
O |
||
PHE | B:46 | B:54 | 110.0 | 0.524 | E | -91.3 | 116.5 | 32.0 | 0.152 | 0.372 |
C:P01139:0.371 |
HOH |
3.086 |
N |
O |
||||||||
PHE | C:46 | C:54 | 99.0 | 0.471 | E | -87.3 | 122.5 | 25.0 | 0.119 | 0.352 |
B:P01139:0.352 |
HOH |
3.174 |
N |
O |
||||||||
1bet | 1 | P01139 | 92.52 | 2e-70 |
X-RAY |
1994-05-31 | PHE | A:45 | A:54 | 99.0 | 0.471 | E | -95.4 | 112.2 | 36.0 | 0.171 | 0.3 |
A:P01139:0.3 |
HOH |
3.214 |
N |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p01138-f1 | 1 | P01138 | 100.0 | 0.0 | PHE | A:175 | A:175 | 62.0 | 0.295 | E | -84.8 | 93.8 |