Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 115828894 . A C CCDS882.1:NM_002506.2:c.523Ttt>Gtt_NP_002497.2:p.175F>V Homo sapiens nerve growth factor (NGF), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6xuo 1 F6SVV7 94.62 8e-146 X-RAY
2020-01-29 PHE A:158 A:54 102.0 0.486 E -100.8 111.2 31.0 0.148 0.338 A:F6SVV7:0.338
3ij2 1 P01139 82.19 2e-135 X-RAY
2010-01-12 PHE A:157 A:54 93.0 0.443 E -111.8 100.4 34.0 0.162 0.281 C:P01139:0.281
PHE C:157 B:54 90.0 0.429 E -110.6 98.8 34.0 0.162 0.267 B:P07174:0.005
A:P01139:0.267
1sg1 1 P01138 100.0 1e-87 X-RAY
2004-06-01 PHE A:54 A:54 91.0 0.433 E -86.0 110.1 28.0 0.133 0.3 B:P01138:0.3
HOH
2.512
N
O
PHE B:54 B:54 95.0 0.452 E -85.8 105.7 35.0 0.167 0.285 A:P01138:0.286
HOH
2.924
N
O
1www 1 P01138 100.0 1e-87 X-RAY
1999-09-15 PHE A:54 V:54 103.0 0.49 E -89.0 113.5 4.0 0.019 0.471 D:P04629:0.176
B:P01138:0.352
HOH
3.058
N
O
PHE B:54 W:54 111.0 0.529 E -90.8 114.2 5.0 0.024 0.505 A:P01138:0.371
C:P04629:0.214
HOH
2.780
O
O
2ifg 2 P01138 100.0 1e-87 X-RAY
2007-02-13 PHE C:54 E:54 115.0 0.548 E -89.0 113.6 8.0 0.038 0.51 D:P01138:0.381
A:P04629:0.195
PHE D:54 F:54 112.0 0.533 E -90.9 114.1 3.0 0.014 0.519 C:P01138:0.376
B:P04629:0.224
4edw 1 P01138 100.0 1e-87 X-RAY
2014-04-02 PHE A:54 V:54 102.0 0.486 E -106.2 124.2 46.0 0.219 0.267 C:None:0.267
HOH
5.229
CE1
O
4edx 1 P01138 100.0 1e-87 X-RAY
2014-04-02 PHE A:54 W:54 111.0 0.529 E -95.1 118.0 1.0 0.005 0.524 C:None:0.276
D:P01138:0.371
HOH
4.018
CD1
O
PHE D:54 V:54 117.0 0.557 E -96.0 118.0 2.0 0.01 0.547 F:None:0.295
A:P01138:0.386
HOH
4.214
CD1
O
4zbn 2 P01138 100.0 1e-87 X-RAY
2015-06-10 PHE C:54 A:54 102.0 0.486 E -93.9 117.7 34.0 0.162 0.324 D:P01138:0.324
DG
DG
DG
DUZ
DC
DC
DG
DUZ
HOH
9.022
7.174
8.634
7.004
9.112
3.460
3.496
7.595
2.904
CE1
CE1
CE1
CD1
CE1
CZ
CZ
CZ
N
N2
N2
N2
C24
O2
O3'
OP1
O4
O
PHE D:54 B:54 101.0 0.481 E -93.5 122.7 32.0 0.152 0.329 C:P01138:0.329
DG
DG
DG
DUZ
DC
DC
DG
DUZ
HOH
9.289
7.248
8.689
6.879
8.756
3.451
3.567
7.963
2.810
CE1
CE1
CE1
CD1
CE1
CZ
CZ
CZ
O
N2
N2
N2
C24
O2
O3'
OP1
O4
O
6yw8 1 P01138 100.0 4e-86 NMR
2021-05-12 PHE A:54 A:54 67.0 0.319 E -106.1 113.6 8.0 0.038 0.281 B:P01138:0.281
PHE B:54 B:54 66.0 0.314 E -105.9 113.4 7.0 0.033 0.281 A:P01138:0.281
4efv 1 ? 97.37 4e-81 X-RAY
2012-08-22 PHE A:54 A:54 106.0 0.505 E -92.9 111.9 36.0 0.171 0.334 B:None:0.333
HOH
2.438
O
O
PHE B:54 B:54 99.0 0.471 E -94.2 107.0 32.0 0.152 0.319 A:None:0.319
HOH
2.645
O
O
5jz7 1 P01138 100.0 4e-80 X-RAY
2017-01-11 PHE A:48 A:54 100.0 0.476 E -90.2 102.0 6.0 0.029 0.447 C:None:0.152
B:P01138:0.352
PHE B:48 B:54 100.0 0.476 E -90.7 102.2 6.0 0.029 0.447 A:P01138:0.357
H:None:0.162
PHE E:48 E:54 94.0 0.448 E -90.6 102.4 NA NA NA
PHE F:48 F:54 98.0 0.467 E -90.5 101.9 NA NA NA
4eax 1 P01139 89.17 1e-77 X-RAY
2012-09-12 PHE A:54 A:54 101.0 0.481 E -88.4 105.3 31.0 0.148 0.333 B:P01139:0.333
HOH
3.804
CE2
O
PHE B:54 B:54 98.0 0.467 E -85.3 101.1 33.0 0.157 0.31 A:P01139:0.31
HOH
8.087
N
O
PHE C:54 C:54 107.0 0.51 E -92.8 112.3 NA NA NA
PHE D:54 D:54 94.0 0.448 E -81.1 104.8 NA NA NA
4xpj 1 P01139 89.17 1e-77 X-RAY
2015-07-15 PHE A:54 A:54 99.0 0.471 E -97.4 110.6 29.0 0.138 0.333 B:P01139:0.333
HOH
3.883
CD2
O
PHE B:54 B:54 91.0 0.433 E -105.4 110.9 31.0 0.148 0.285 A:P01139:0.286
HOH
3.767
CE1
O
1sgf 2 P01139 89.83 8e-77 X-RAY
1998-05-27 PHE B:54 B:54 100.0 0.476 E -89.9 114.6 6.0 0.029 0.447 E:P01139:0.319
D:P00757:0.167
PHE E:54 Y:54 101.0 0.481 E -88.2 112.5 6.0 0.029 0.452 B:P01139:0.329
A:P00757:0.2
5lsd 1 P01139 89.83 8e-77 NMR
2017-07-05 PHE A:54 A:54 81.0 0.386 E -84.4 94.9 11.0 0.052 0.334 B:P01139:0.333
PHE B:54 B:54 85.0 0.405 E -84.4 95.0 12.0 0.057 0.348 A:P01139:0.348
6ffy 2 P01139 90.43 4e-75 X-RAY
2018-08-01 PHE B:54 B:175 98.0 0.467 E -91.4 105.8 18.0 0.086 0.381 C:P01139:0.3
A:Q9EPR5:0.095
PHE C:54 C:175 104.0 0.495 E -98.5 104.5 40.0 0.19 0.305 B:P01139:0.305
1btg 1 P01139 91.74 4e-71 X-RAY
1996-03-08 PHE A:46 A:54 95.0 0.452 E -107.5 108.9 95.0 0.452 0.0 HOH
3.514
N
O
PHE B:46 B:54 110.0 0.524 E -91.3 116.5 32.0 0.152 0.372 C:P01139:0.371
HOH
3.086
N
O
PHE C:46 C:54 99.0 0.471 E -87.3 122.5 25.0 0.119 0.352 B:P01139:0.352
HOH
3.174
N
O
1bet 1 P01139 92.52 2e-70 X-RAY
1994-05-31 PHE A:45 A:54 99.0 0.471 E -95.4 112.2 36.0 0.171 0.3 A:P01139:0.3
HOH
3.214
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p01138-f1 1 P01138 100.0 0.0 PHE A:175 A:175 62.0 0.295 E -84.8 93.8