Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151254 . G A CCDS1173.1:NM_001766.3:c.71aGg>aAg_NP_001757.1:p.24R>K Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 ARG A:6 A:6 199.0 0.884 360.0 57.4 199.0 0.884 0.0
ARG C:6 C:6 144.0 0.64 -115.5 56.8 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:3 A:3 168.0 0.747 G -70.5 -23.3 168.0 0.747 0.0 HOH
 4.672
 N
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:3 A:6 116.0 NA -64.4 153.6 116.0 NA NA
ARG C:3 C:6 172.0 NA 360.0 -20.9 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:3 A:6 256.0 1.0 360.0 7.1 256.0 1.0 0.0
ARG F:3 NA:NA DO NA DO DO DO NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ARG C:7 NA:NA DO NA DO DO DO NA NA NA
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 ARG A:7 A:6 143.0 NA 360.0 21.5 143.0 NA NA HOH
 3.006
 N
 O
ARG C:7 C:6 219.0 0.973 -160.4 -14.7 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ARG A:7 NA:NA DO NA DO DO DO NA NA NA
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ARG A:7 NA:NA DO NA DO DO DO NA NA NA
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ARG C:7 C:6 42.0 0.187 -86.0 107.0 42.0 0.187 0.0
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 ARG A:7 NA:NA DO NA DO DO DO NA NA NA
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 ARG A:1 A:6 183.0 0.813 360.0 151.9 183.0 0.813 0.0
ARG F:1 C:6 133.0 NA 360.0 150.9 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 ARG A:1 A:6 208.0 0.924 360.0 109.3 208.0 0.924 0.0
ARG E:1 E:6 228.0 1.0 360.0 136.0 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 ARG A:1 A:6 120.0 0.533 360.0 97.9 120.0 0.533 0.0
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 ARG A:1 NA:NA DO NA DO DO DO NA NA NA
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 ARG A:7 A:6 230.0 1.0 360.0 -118.4 230.0 1.0 0.0 HOH
 3.061
 N
 O
ARG C:7 C:6 242.0 1.0 360.0 31.8 NA NA NA
ARG E:7 NA:NA DO NA DO DO DO NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 ARG C:5 NA:NA DO NA DO DO DO NA NA NA
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ARG B:7 A:6 271.0 1.0 360.0 62.8 271.0 1.0 0.0
ARG D:7 C:6 144.0 NA 360.0 63.5 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ARG A:7 A:6 139.0 NA 360.0 97.3 139.0 NA NA HOH
 9.555
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ARG A:24 A:24 68.0 0.302 -67.2 104.9