Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151305 . G A CCDS1173.1:NM_001766.3:c.122tGg>tAg_NP_001757.1:p.41W>* Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 TRP A:23 A:23 183.0 0.718 E -116.4 110.4 183.0 0.718 0.0 HOH
 6.959
 N
 O
TRP C:23 C:23 138.0 0.541 -85.3 108.7 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:20 A:20 129.0 0.506 -84.1 128.0 124.0 0.486 0.02 B:P61769:0.02
 NAG
NAG
NAG
NAG
HOH
 3.517
8.076
3.757
3.426
6.558
 CZ2
CD1
CB
NE1
C
 C8
O6
O5
C8
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:20 A:23 133.0 0.522 -78.1 125.5 133.0 0.522 0.0 NAG
NAG
NAG
BMA
HOH
 3.776
3.396
3.527
8.172
7.786
 CB
NE1
CZ2
N
C
 C1
C8
C8
O2
O
TRP C:20 C:23 136.0 0.533 -76.9 126.4 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:20 A:23 139.0 0.545 E -128.7 138.5 136.0 0.533 0.012 B:P61769:0.012
 NAG
NAG
 3.218
6.900
 NE1
CA
 C8
O7
TRP F:20 F:23 159.0 0.624 -112.2 130.1 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 TRP C:24 C:23 132.0 0.518 -57.6 130.0 126.0 0.494 0.024 D:P61769:0.024
 NAG
NAG
 3.939
3.560
 CB
CZ2
 O5
C8
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 TRP A:24 A:23 134.0 0.525 E -126.7 118.3 134.0 0.525 0.0 NAG
BMA
NAG
HOH
 3.489
7.973
3.283
5.278
 CZ2
CA
CB
CH2
 C8
O5
O5
O
TRP C:24 C:23 138.0 0.541 E -138.9 119.0 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 TRP A:24 A:23 135.0 0.529 E -141.8 112.2 127.0 0.498 0.031 B:P61769:0.031
 NAG
NAG
 3.627
3.222
 CB
CZ2
 C1
O7
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 TRP A:24 A:23 141.0 0.553 -106.6 118.3 141.0 0.553 0.0 NAG
NAG
 3.654
3.247
 CB
CZ2
 C1
O7
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 TRP C:24 C:23 130.0 0.51 -99.5 126.2 130.0 0.51 0.0 NAG
NAG
HOH
 3.663
3.539
9.755
 CB
CZ2
CA
 O5
C8
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 TRP A:24 C:23 137.0 0.537 -120.7 122.6 137.0 0.537 0.0 NAG
NAG
NAG
HOH
 3.710
7.764
3.311
7.257
 CZ2
CA
CB
CZ3
 C8
O6
C1
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 TRP A:18 A:23 148.0 0.58 -111.0 124.4 140.0 0.549 0.031 B:P61769:0.031
 HOH
 7.681
 N
 O
TRP F:18 C:23 147.0 0.576 -108.1 122.8 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 TRP A:18 A:23 166.0 0.651 B -154.6 122.0 166.0 0.651 0.0 NAG
BMA
NAG
NAG
 6.995
8.454
4.480
3.606
 CE3
N
CD2
CE2
 O6
C1
C8
O6
TRP E:18 E:23 176.0 0.69 E -132.3 117.0 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 TRP A:18 A:23 132.0 0.518 -67.0 126.9 132.0 0.518 0.0 NAG
NAG
NAG
NAG
BMA
HOH
 3.531
3.480
3.378
7.115
9.033
9.943
 CB
NE1
CZ2
N
N
C
 O3
O6
C8
O5
O6
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 TRP A:18 A:23 142.0 0.557 E -126.2 114.9 142.0 0.557 0.0 NAG
NAG
FUC
NAG
NAG
HOH
 3.654
3.687
4.160
3.330
8.313
3.552
 CB
NE1
CZ3
NE1
N
CA
 O5
O7
C6
C8
O7
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 TRP A:24 A:23 145.0 0.569 -105.3 122.3 145.0 0.569 0.0 NAG
FUC
NAG
FUC
HOH
 3.994
8.025
5.477
4.685
3.731
 CB
CD1
NE1
CE3
CZ2
 C1
O2
O3
O2
O
TRP C:24 C:23 113.0 0.443 -87.2 129.4 NA NA NA
TRP E:24 E:23 132.0 0.518 -108.1 111.9 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 TRP C:22 C:23 144.0 0.565 -119.5 135.2 144.0 0.565 0.0 NAG
FUC
 3.598
5.224
 CB
CZ3
 C5
O4
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 TRP B:24 A:23 128.0 0.502 -108.6 120.8 111.0 0.435 0.067 A:P01887:0.067
 NAG
NAG
 3.736
3.370
 CB
NE1
 C1
C8
TRP D:24 C:23 134.0 0.525 -108.6 119.2 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 TRP A:24 A:23 126.0 0.494 -113.6 131.4 103.0 0.404 0.09 B:P01887:0.09
 NAG
HOH
 3.438
4.430
 NE1
CZ3
 C8
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 TRP A:41 A:41 127.0 0.498 -97.8 122.9