Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151328 . T A CCDS1173.1:NM_001766.3:c.145Tgg>Agg_NP_001757.1:p.49W>R Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 TRP A:31 A:31 65.0 0.255 E -124.3 128.4 35.0 0.137 0.118 B:P61769:0.118
 AGH
HOH
 7.162
8.340
 N
NE1
 CAR
O
TRP C:31 C:31 64.0 0.251 E -127.6 126.6 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:28 A:28 61.0 0.239 E -120.6 122.3 30.0 0.118 0.121 B:P61769:0.122
 AGH
SO4
HOH
 6.755
8.653
3.277
 N
NE1
CZ3
 CAO
O1
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:28 A:31 61.0 0.239 E -121.4 135.3 33.0 0.129 0.11 B:P61769:0.11
 AGH
SO4
BGC
 6.839
8.427
4.404
 N
NE1
CH2
 CAP
O3
O2
TRP C:28 C:31 55.0 0.216 E -119.4 135.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:28 A:31 72.0 0.282 E -111.4 135.9 44.0 0.173 0.109 B:P61769:0.11
 AGH
 6.881
 N
 CAP
TRP F:28 F:31 67.0 0.263 E -120.1 139.8 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 TRP C:32 C:31 76.0 0.298 E -128.8 130.9 39.0 0.153 0.145 D:P61769:0.145
 JLS
 6.818
 N
 CAP
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 TRP A:32 A:31 74.0 0.29 E -115.4 127.9 39.0 0.153 0.137 B:P61769:0.137
 AGH
HOH
 6.881
3.298
 N
O
 CAR
O
TRP C:32 C:31 79.0 0.31 E -116.7 146.6 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 TRP A:32 A:31 80.0 0.314 E -107.3 111.0 45.0 0.176 0.138 B:P61769:0.137
 DB3
HOH
 6.925
8.850
 N
CD1
 CAR
O
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 TRP A:32 A:31 86.0 0.337 E -112.3 134.9 52.0 0.204 0.133 B:P61769:0.133
 4GH
 7.157
 N
 CAP
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 TRP C:32 C:31 81.0 0.318 E -111.7 132.2 44.0 0.173 0.145 D:P61769:0.145
 JLS
HOH
 7.051
6.344
 N
CD1
 CAR
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 TRP A:32 C:31 75.0 0.294 E -114.8 124.9 45.0 0.176 0.118 D:P61769:0.118
 AGH
HOH
 6.568
3.247
 N
O
 CAP
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 TRP A:26 A:31 80.0 0.314 E -119.3 127.9 45.0 0.176 0.138 B:P61769:0.137
 GCY
HOH
 9.556
3.826
 N
CZ3
 CAM
O
TRP F:26 C:31 80.0 0.314 E -118.7 127.8 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 TRP A:26 A:31 65.0 0.255 E -114.6 137.5 33.0 0.129 0.126 B:P61769:0.125
 AGH
 6.911
 N
 CAP
TRP E:26 E:31 68.0 0.267 E -111.2 137.5 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 TRP A:26 A:31 66.0 0.259 E -122.7 124.1 33.0 0.129 0.13 B:P61769:0.129
 JLS
 7.041
 N
 CAR
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 TRP A:26 A:31 62.0 0.243 E -123.2 126.3 30.0 0.118 0.125 B:P61769:0.125
 JLS
HOH
 7.023
3.274
 N
O
 CAQ
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 TRP A:32 A:31 78.0 0.306 E -114.5 132.6 41.0 0.161 0.145 B:P61769:0.145
 HEX
UND
GOL
HOH
 9.762
7.076
8.979
3.439
 O
N
CG
O
 C4
C4
O3
O
TRP C:32 C:31 79.0 0.31 E -117.4 128.2 NA NA NA
TRP E:32 E:31 82.0 0.322 E -121.0 121.1 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 TRP C:30 C:31 81.0 0.318 E -95.6 130.8 42.0 0.165 0.153 D:P61769:0.153
 HEX
D12
 9.821
7.158
 N
N
 C6
C5
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 TRP B:32 A:31 63.0 0.247 E -105.2 131.5 34.0 0.133 0.114 A:P01887:0.114
 CIS
 6.938
 N
 C35
TRP D:32 C:31 62.0 0.243 E -105.6 131.5 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 TRP A:32 A:31 79.0 0.31 E -114.5 127.5 43.0 0.169 0.141 B:P01887:0.141
 CIS
HOH
 6.983
3.170
 N
O
 C34
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 TRP A:49 A:49 76.0 0.298 E -114.5 129.5