Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151373 . A C CCDS1173.1:NM_001766.3:c.190Acc>Ccc_NP_001757.1:p.64T>P Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 THR A:46 A:46 61.0 0.436 S -144.2 152.5 61.0 0.436 0.0 AGH
HOH
 8.267
9.882
 C
O
 CAP
O
THR C:46 C:46 59.0 0.421 S -143.3 153.4 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 THR A:43 A:43 50.0 0.357 S -117.1 170.3 50.0 0.357 0.0 AGH
CL
HOH
 8.380
4.334
3.619
 C
N
CA
 CAP
CL
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 THR A:43 A:46 47.0 0.336 S -137.8 156.6 47.0 0.336 0.0 NAG
AGH
CL
HOH
 9.569
8.022
9.358
4.065
 N
C
CG2
N
 O6
CAO
CL
O
THR C:43 C:46 71.0 0.507 S -130.0 147.7 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 THR A:43 A:46 55.0 0.393 S -139.7 151.1 55.0 0.393 0.0 NAG
AGH
 9.389
8.421
 N
C
 O6
CAO
THR F:43 F:46 60.0 0.429 S -128.5 134.0 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 THR C:47 C:46 74.0 0.529 S -124.4 154.7 74.0 0.529 0.0 JLS
 8.104
 C
 CAQ
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 THR A:47 A:46 52.0 0.371 S -116.7 163.5 52.0 0.371 0.0 AGH
HOH
 8.304
2.450
 C
OG1
 CAO
O
THR C:47 C:46 56.0 0.4 S -132.4 164.2 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 THR A:47 A:46 75.0 0.536 S -130.3 -174.1 75.0 0.536 0.0 NAG
DB3
 9.718
8.357
 N
O
 O6
CAQ
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 THR A:47 A:46 70.0 0.5 S -144.6 152.4 70.0 0.5 0.0 4GH
 8.447
 C
 CAQ
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 THR C:47 C:46 61.0 0.436 S -136.9 152.6 61.0 0.436 0.0 JLS
HOH
 8.146
2.901
 C
O
 CAP
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 THR A:47 C:46 50.0 0.357 S -112.4 160.5 50.0 0.357 0.0 NAG
AGH
HOH
 9.374
8.214
3.776
 N
C
CA
 O6
CAQ
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 THR A:41 A:46 62.0 0.443 S -129.7 173.8 62.0 0.443 0.0 HOH
 4.613
 CG2
 O
THR F:41 C:46 64.0 0.457 S -126.8 175.6 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 THR A:41 A:46 64.0 0.457 S -108.7 163.0 64.0 0.457 0.0 NAG
AGH
 9.715
8.178
 N
C
 C6
CAO
THR E:41 E:46 59.0 0.421 S -159.1 155.7 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 THR A:41 A:46 58.0 0.414 S -149.1 167.9 58.0 0.414 0.0 JLS
HOH
 7.978
5.214
 C
CB
 CAQ
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 THR A:41 A:46 74.0 0.529 S -136.6 152.5 74.0 0.529 0.0 JLS
HOH
 8.188
2.846
 C
O
 CAR
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 THR A:47 A:46 65.0 0.464 S -136.9 151.4 65.0 0.464 0.0 UND
HOH
 8.159
8.073
 O
O
 C5
O
THR C:47 C:46 74.0 0.529 S -135.3 150.8 NA NA NA
THR E:47 E:46 68.0 0.486 S -136.0 165.5 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 THR C:45 C:46 77.0 0.55 S -78.8 146.4 77.0 0.55 0.0 D12
 8.954
 C
 C7
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 THR B:47 A:46 65.0 0.464 S -138.6 167.7 65.0 0.464 0.0 NAG
CIS
HOH
 9.411
8.337
9.075
 N
C
CG2
 O6
C34
O
THR D:47 C:46 61.0 0.436 S -138.0 168.0 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 THR A:47 A:46 73.0 0.521 S -124.8 134.8 73.0 0.521 0.0 NAG
CIS
HOH
 9.773
8.106
2.613
 N
C
O
 C6
C35
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 THR A:64 A:64 65.0 0.464 S -130.6 147.7