Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 158151505 | . | T | A | CCDS1173.1:NM_001766.3:c.322Tta>Ata_NP_001757.1:p.108L>I | Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1zt4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2005-07-19 | LEU | A:90 | A:90 | 32.0 | 0.188 | -121.0 | 129.0 | 32.0 | 0.188 | 0.0 |
AGH HOH |
3.458 7.381 |
CD1 O |
C18 O |
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LEU | C:90 | C:90 | 26.0 | 0.153 | -97.3 | 129.2 | NA | NA | NA | ||||||||||||||
6v7y | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | LEU | A:87 | A:87 | 35.0 | 0.206 | -81.0 | 96.7 | 35.0 | 0.206 | 0.0 |
AGH HOH |
3.801 4.328 |
CD1 C |
C18 O |
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6v7z | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | LEU | A:87 | A:90 | 35.0 | 0.206 | -85.0 | 151.5 | 20.0 | 0.118 | 0.088 |
F:None:0.088 |
AGH HOH |
3.492 5.623 |
CD1 CD2 |
C18 O |
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LEU | C:87 | C:90 | 34.0 | 0.2 | -91.6 | 156.6 | NA | NA | NA | ||||||||||||||
6v80 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | LEU | A:87 | A:90 | 43.0 | 0.253 | -96.6 | 112.5 | 43.0 | 0.253 | 0.0 |
AGH |
4.383 |
CD1 |
C17 |
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LEU | F:87 | F:90 | 34.0 | 0.2 | -79.8 | 126.6 | NA | NA | NA | ||||||||||||||
4wwk | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | LEU | C:91 | C:90 | 40.0 | 0.235 | -106.1 | 134.1 | 40.0 | 0.235 | 0.0 |
JLS |
3.688 |
CD1 |
C18 |
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3huj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2009-07-28 | LEU | A:91 | A:90 | 36.0 | 0.212 | -91.5 | 136.7 | 36.0 | 0.212 | 0.0 |
AGH HOH |
3.401 4.446 |
CD1 O |
C18 O |
|||
LEU | C:91 | C:90 | 38.0 | 0.224 | -100.4 | 148.2 | NA | NA | NA | ||||||||||||||
3vwj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | LEU | A:91 | A:90 | 35.0 | 0.206 | -63.3 | 135.1 | 35.0 | 0.206 | 0.0 |
DB3 |
3.718 |
CD1 |
C18 |
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3vwk | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | LEU | A:91 | A:90 | 42.0 | 0.247 | -69.0 | 162.2 | 42.0 | 0.247 | 0.0 |
4GH HOH |
4.122 4.429 |
CD1 CB |
C18 O |
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4ww2 | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | LEU | C:91 | C:90 | 34.0 | 0.2 | -104.8 | 130.0 | 34.0 | 0.2 | 0.0 |
JLS |
3.703 |
CD1 |
C17 |
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4en3 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2012-10-31 | LEU | A:91 | C:90 | 33.0 | 0.194 | -103.1 | 150.7 | 33.0 | 0.194 | 0.0 |
AGH HOH |
4.039 6.845 |
CD1 O |
C17 O |
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3sdx | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2011-10-05 | LEU | A:85 | A:90 | 41.0 | 0.241 | -102.4 | 147.5 | 41.0 | 0.241 | 0.0 |
GCY HOH |
3.619 8.544 |
CD1 CD1 |
C1 O |
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LEU | F:85 | C:90 | 42.0 | 0.247 | -99.4 | 146.8 | NA | NA | NA | ||||||||||||||
2po6 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2007-07-03 | LEU | A:85 | A:90 | 36.0 | 0.212 | -103.8 | 125.7 | 36.0 | 0.212 | 0.0 |
AGH |
3.536 |
CD1 |
C18 |
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LEU | E:85 | E:90 | 38.0 | 0.224 | -112.8 | 143.8 | NA | NA | NA | ||||||||||||||
4lhu | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2013-10-02 | LEU | A:85 | A:90 | 38.0 | 0.224 | -116.7 | 129.1 | 38.0 | 0.224 | 0.0 |
JLS HOH |
3.798 4.157 |
CD1 CD2 |
C18 O |
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4wo4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2014-11-26 | LEU | A:85 | A:90 | 30.0 | 0.176 | -102.6 | 126.4 | 30.0 | 0.176 | 0.0 |
JLS HOH |
3.708 3.895 |
CD1 CD2 |
C18 O |
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3u0p | 1 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | LEU | A:91 | A:90 | 32.0 | 0.188 | -83.9 | 131.0 | 32.0 | 0.188 | 0.0 |
LSC SO4 HOH |
3.181 3.902 5.667 |
CD1 O O |
C1 O2 O |
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LEU | C:91 | C:90 | 29.0 | 0.171 | -79.7 | 133.9 | NA | NA | NA | ||||||||||||||
LEU | E:91 | E:90 | 27.0 | 0.159 | -83.0 | 122.2 | NA | NA | NA | ||||||||||||||
3tzv | 3 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | LEU | C:89 | C:90 | 40.0 | 0.235 | -61.1 | 162.1 | 40.0 | 0.235 | 0.0 |
LSC |
3.686 |
CD1 |
C1 |
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4mng | 2 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | LEU | B:91 | A:90 | 40.0 | 0.235 | -75.4 | 137.1 | 40.0 | 0.235 | 0.0 |
CIS |
3.743 |
CD1 |
C17 |
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LEU | D:91 | C:90 | 38.0 | 0.224 | -74.2 | 137.8 | NA | NA | NA | ||||||||||||||
4mq7 | 1 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | LEU | A:91 | A:90 | 39.0 | 0.229 | -97.6 | 134.0 | 39.0 | 0.229 | 0.0 |
CIS HOH |
3.658 5.117 |
CD1 O |
C17 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p15813-f1 | 1 | P15813 | 100.0 | 0.0 | LEU | A:108 | A:108 | 36.0 | 0.212 | -73.1 | 136.8 |