Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151845 . G A CCDS1173.1:NM_001766.3:c.352Gct>Act_NP_001757.1:p.118A>T Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 ALA A:100 A:100 15.0 0.13 E -118.1 158.5 15.0 0.13 0.0 AGH
HOH
 4.030
7.638
 CB
N
 CAZ
O
ALA C:100 C:100 15.0 0.13 E -118.2 163.5 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ALA A:97 A:97 12.0 0.104 E -142.4 149.7 12.0 0.104 0.0 AGH
HOH
 3.793
7.437
 CB
N
 CAZ
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ALA A:97 A:100 12.0 0.104 E -122.0 153.2 12.0 0.104 0.0 AGH
HOH
 4.122
7.602
 CB
N
 CAZ
O
ALA C:97 C:100 15.0 0.13 E -124.1 155.3 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ALA A:97 A:100 10.0 0.087 E -162.6 159.5 10.0 0.087 0.0 AGH
 4.639
 CB
 CAZ
ALA F:97 F:100 11.0 0.096 E -153.9 147.1 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ALA C:101 C:100 13.0 0.113 E -117.8 159.5 13.0 0.113 0.0 JLS
 4.464
 CB
 CAJ
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 ALA A:101 A:100 13.0 0.113 E -131.8 157.2 13.0 0.113 0.0 AGH
HOH
 3.904
6.200
 CB
N
 CAZ
O
ALA C:101 C:100 14.0 0.122 E -134.3 136.3 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ALA A:101 A:100 13.0 0.113 -86.7 -161.3 13.0 0.113 0.0 DB3
HOH
 4.644
5.718
 CB
O
 CAJ
O
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ALA A:101 A:100 14.0 0.122 E -123.9 153.7 14.0 0.122 0.0 4GH
 4.040
 CB
 CAJ
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ALA C:101 C:100 15.0 0.13 E -116.8 157.0 15.0 0.13 0.0 JLS
HOH
 4.066
7.405
 CB
N
 CAJ
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 ALA A:101 C:100 13.0 0.113 E -137.5 152.4 13.0 0.113 0.0 AGH
HOH
 4.763
7.132
 CB
CA
 CAI
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 ALA A:95 A:100 14.0 0.122 E -134.0 148.8 14.0 0.122 0.0 GCY
HOH
 4.668
6.487
 CB
O
 CAM
O
ALA F:95 C:100 14.0 0.122 E -134.5 153.0 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 ALA A:95 A:100 14.0 0.122 E -126.2 144.8 14.0 0.122 0.0 AGH
 3.926
 CB
 CAZ
ALA E:95 E:100 12.0 0.104 E -143.9 138.2 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 ALA A:95 A:100 13.0 0.113 E -135.2 168.9 13.0 0.113 0.0 JLS
HOH
 4.297
7.348
 CB
CA
 CAJ
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 ALA A:95 A:100 12.0 0.104 E -133.8 147.7 12.0 0.104 0.0 JLS
HOH
 4.120
7.385
 CB
CA
 CAJ
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 ALA A:101 A:100 13.0 0.113 E -138.2 148.3 13.0 0.113 0.0 LSC
HEX
SO4
UND
HOH
 9.385
4.366
8.978
4.606
6.933
 CB
O
CA
CB
N
 C10
C5
O3
C10
O
ALA C:101 C:100 11.0 0.096 E -145.8 148.9 NA NA NA
ALA E:101 E:100 11.0 0.096 E -137.5 161.1 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 ALA C:99 C:100 10.0 0.087 E -140.1 158.5 10.0 0.087 0.0 LSC
HEX
D12
 9.729
5.121
7.115
 CB
N
O
 C8
C6
C12
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ALA B:101 A:100 9.0 0.078 E -141.7 157.3 9.0 0.078 0.0 CIS
 4.469
 CB
 C27
ALA D:101 C:100 10.0 0.087 E -141.6 157.3 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ALA A:101 A:100 11.0 0.096 E -133.2 168.4 11.0 0.096 0.0 CIS
HOH
 4.460
6.899
 CB
O
 C27
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ALA A:118 A:118 13.0 0.113 E -128.0 153.9