Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 158151902 | . | C | A | CCDS1173.1:NM_001766.3:c.409Caa>Aaa_NP_001757.1:p.137Q>K | Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1zt4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2005-07-19 | GLN | A:119 | A:119 | 88.0 | 0.489 | T | 52.1 | 36.6 | 52.0 | 0.289 | 0.2 |
B:P61769:0.2 |
AGH |
7.599 |
CG |
C18 |
|
GLN | C:119 | C:119 | 92.0 | 0.511 | T | 54.4 | 32.6 | NA | NA | NA | |||||||||||||
6v7y | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | GLN | A:116 | A:116 | 103.0 | 0.572 | T | 61.5 | 49.4 | 70.0 | 0.389 | 0.183 |
B:P61769:0.183 |
AGH HOH |
8.786 4.045 |
N NE2 |
C17 O |
|
6v7z | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | GLN | A:116 | A:119 | 101.0 | 0.561 | T | 50.3 | 36.6 | 22.0 | 0.122 | 0.439 |
B:P61769:0.294 F:None:0.239 |
AGH HOH |
7.975 2.995 |
CG NE2 |
C18 O |
|
GLN | C:116 | C:119 | 95.0 | 0.528 | T | 49.0 | 37.7 | NA | NA | NA | |||||||||||||
6v80 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | GLN | A:116 | A:119 | 88.0 | 0.489 | T | 42.1 | 52.6 | 71.0 | 0.394 | 0.095 |
B:P61769:0.094 |
AGH |
8.417 |
CG |
C17 |
|
GLN | F:116 | F:119 | 100.0 | 0.556 | T | 50.4 | 33.0 | NA | NA | NA | |||||||||||||
4wwk | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | GLN | C:120 | C:119 | 95.0 | 0.528 | T | 58.3 | 40.2 | 62.0 | 0.344 | 0.184 |
D:P61769:0.183 |
JLS |
8.080 |
CG |
C17 |
|
3huj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2009-07-28 | GLN | A:120 | A:119 | 93.0 | 0.517 | T | 49.8 | 36.3 | 68.0 | 0.378 | 0.139 |
B:P61769:0.139 |
AGH HOH |
8.293 2.659 |
N OE1 |
C17 O |
|
GLN | C:120 | C:119 | 89.0 | 0.494 | T | 47.5 | 34.9 | NA | NA | NA | |||||||||||||
3vwj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | GLN | A:120 | A:119 | 96.0 | 0.533 | T | 50.8 | 44.7 | 75.0 | 0.417 | 0.116 |
B:P61769:0.117 |
DB3 |
8.731 |
N |
C17 |
|
3vwk | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | GLN | A:120 | A:119 | 103.0 | 0.572 | T | 50.4 | 28.4 | 68.0 | 0.378 | 0.194 |
B:P61769:0.194 |
4GH HOH |
8.142 3.564 |
N NE2 |
C17 O |
|
4ww2 | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | GLN | C:120 | C:119 | 107.0 | 0.594 | T | 56.2 | 44.9 | 83.0 | 0.461 | 0.133 |
D:P61769:0.133 |
JLS |
8.491 |
CG |
C18 |
|
4en3 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2012-10-31 | GLN | A:120 | C:119 | 89.0 | 0.494 | T | 60.1 | 30.6 | 65.0 | 0.361 | 0.133 |
D:P61769:0.133 |
AGH HOH |
8.086 3.132 |
N N |
C18 O |
|
3sdx | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2011-10-05 | GLN | A:114 | A:119 | 83.0 | 0.461 | T | 45.9 | 31.3 | 56.0 | 0.311 | 0.15 |
B:P61769:0.15 |
GCY HOH |
7.803 4.733 |
N CB |
C2 O |
|
GLN | F:114 | C:119 | 84.0 | 0.467 | T | 44.9 | 34.3 | NA | NA | NA | |||||||||||||
2po6 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2007-07-03 | GLN | A:114 | A:119 | 82.0 | 0.456 | T | 41.1 | 53.9 | 49.0 | 0.272 | 0.184 |
B:P61769:0.183 |
AGH |
7.372 |
NE2 |
C18 |
|
GLN | E:114 | E:119 | 84.0 | 0.467 | T | 53.7 | 44.3 | NA | NA | NA | |||||||||||||
4lhu | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2013-10-02 | GLN | A:114 | A:119 | 63.0 | 0.35 | T | 59.7 | 43.5 | 47.0 | 0.261 | 0.089 |
B:P61769:0.089 |
JLS |
7.481 |
NE2 |
C18 |
|
4wo4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2014-11-26 | GLN | A:114 | A:119 | 76.0 | 0.422 | T | 57.4 | 39.0 | 53.0 | 0.294 | 0.128 |
B:P61769:0.128 |
JLS HOH |
7.585 3.127 |
NE2 N |
C18 O |
|
3u0p | 1 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | GLN | A:120 | A:119 | 87.0 | 0.483 | T | 50.4 | 32.1 | 64.0 | 0.356 | 0.127 |
B:P61769:0.128 |
LSC SO4 HOH |
7.980 8.943 8.096 |
CG NE2 O |
C1 O2 O |
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GLN | C:120 | C:119 | 91.0 | 0.506 | T | 58.1 | 31.3 | NA | NA | NA | |||||||||||||
GLN | E:120 | E:119 | 93.0 | 0.517 | T | 57.0 | 39.4 | NA | NA | NA | |||||||||||||
3tzv | 3 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | GLN | C:118 | C:119 | 91.0 | 0.506 | S | 61.1 | 34.8 | 63.0 | 0.35 | 0.156 |
D:P61769:0.156 |
LSC |
7.717 |
N |
C1 |
|
4mng | 2 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | GLN | B:120 | A:119 | 81.0 | 0.45 | T | 56.6 | 37.6 | 53.0 | 0.294 | 0.156 |
A:P01887:0.156 |
CIS |
7.263 |
NE2 |
C17 |
|
GLN | D:120 | C:119 | 71.0 | 0.394 | T | 57.1 | 37.6 | NA | NA | NA | |||||||||||||
4mq7 | 1 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | GLN | A:120 | A:119 | 73.0 | 0.406 | T | 56.9 | 41.1 | 50.0 | 0.278 | 0.128 |
B:P01887:0.128 |
CIS HOH |
7.112 5.945 |
NE2 O |
C17 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p15813-f1 | 1 | P15813 | 100.0 | 0.0 | GLN | A:137 | A:137 | 94.0 | 0.522 | T | 53.1 | 41.2 |