Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151956 . G A CCDS1173.1:NM_001766.3:c.463Gcc>Acc_NP_001757.1:p.155A>T Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
2005-07-19 ALA A:137 A:137 17.0 0.148 175.6 97.3 17.0 0.148 0.0
ALA C:137 C:137 8.0 0.07 -19.7 136.7 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
2020-09-16 ALA A:134 A:134 16.0 0.139 -15.0 127.6 16.0 0.139 0.0 HOH
7.404
N
O
6v7z 1 P15813 100.0 0.0 X-RAY
2020-09-16 ALA A:134 A:137 19.0 0.165 -83.8 137.8 9.0 0.078 0.087 F:None:0.087
HOH
5.163
N
O
ALA C:134 C:137 18.0 0.157 -84.1 138.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
2020-09-16 ALA A:134 A:137 24.0 0.209 -102.5 152.7 24.0 0.209 0.0
ALA F:134 F:137 43.0 0.374 -138.8 -171.2 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
2016-02-03 ALA C:138 C:137 15.0 0.13 -68.2 145.7 15.0 0.13 0.0
3huj 1 P15813 99.28 0.0 X-RAY
2009-07-28 ALA A:138 A:137 23.0 0.2 -78.7 147.3 23.0 0.2 0.0 HOH
4.367
N
O
ALA C:138 C:137 19.0 0.165 -14.7 132.7 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
2012-10-03 ALA A:138 A:137 24.0 0.209 -71.8 142.8 24.0 0.209 0.0
3vwk 1 P15813 99.28 0.0 X-RAY
2012-10-03 ALA A:138 A:137 31.0 0.27 -102.9 151.9 31.0 0.27 0.0
4ww2 3 P15813 99.28 0.0 X-RAY
2016-02-03 ALA C:138 C:137 28.0 0.243 -137.2 134.3 28.0 0.243 0.0 HOH
4.783
N
O
4en3 1 P15813 100.0 0.0 X-RAY
2012-10-31 ALA A:138 C:137 26.0 0.226 -138.7 129.2 26.0 0.226 0.0
3sdx 1 P15813 100.0 0.0 X-RAY
2011-10-05 ALA A:132 A:137 21.0 0.183 -63.7 150.0 21.0 0.183 0.0 HOH
7.153
CA
O
ALA F:132 C:137 22.0 0.191 -63.4 149.3 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
2007-07-03 ALA A:132 A:137 20.0 0.174 -62.3 143.1 20.0 0.174 0.0
ALA E:132 E:137 26.0 0.226 -149.4 128.9 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
2013-10-02 ALA A:132 A:137 26.0 0.226 -97.5 105.3 26.0 0.226 0.0
4wo4 1 P15813 100.0 0.0 X-RAY
2014-11-26 ALA A:132 A:137 24.0 0.209 -120.1 145.4 24.0 0.209 0.0 HOH
6.553
CA
O
3u0p 1 P15813 98.91 0.0 X-RAY
2012-04-25 ALA A:138 A:137 12.0 0.104 -35.5 127.2 12.0 0.104 0.0
ALA C:138 C:137 18.0 0.157 -66.4 142.5 NA NA NA
ALA E:138 E:137 20.0 0.174 -113.0 163.5 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
2012-04-25 ALA C:136 C:137 16.0 0.139 S -76.2 132.0 16.0 0.139 0.0 LSC
8.775
CB
C2
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
2013-12-18 ALA B:138 A:137 32.0 0.278 -149.6 148.6 32.0 0.278 0.0
ALA D:138 C:137 32.0 0.278 -149.8 148.6 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
2013-12-18 ALA A:138 A:137 31.0 0.27 -155.0 136.2 31.0 0.27 0.0 HOH
8.504
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ALA A:155 A:155 22.0 0.191 -65.1 136.4