Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152031 . C A CCDS1173.1:NM_001766.3:c.538Ctt>Att_NP_001757.1:p.180L>I Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 LEU A:162 A:162 8.0 0.047 I -72.1 -51.1 8.0 0.047 0.0 AGH
 4.627
 CD2
 CAZ
LEU C:162 C:162 9.0 0.053 I -69.8 -46.8 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:159 A:159 8.0 0.047 I -69.4 -44.5 8.0 0.047 0.0 AGH
NAG
CL
HOH
 3.830
6.344
9.407
2.588
 CD2
C
CD1
O
 CAY
C1
CL
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:159 A:162 13.0 0.076 I -82.2 -37.9 13.0 0.076 0.0 NAG
AGH
HOH
 7.128
4.067
7.262
 C
CD2
CD1
 C1
CAZ
O
LEU C:159 C:162 11.0 0.065 I -81.0 -37.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:159 A:162 18.0 0.106 I -62.5 -48.0 18.0 0.106 0.0 AGH
 3.915
 CD2
 CAZ
LEU F:159 F:162 19.0 0.112 T -79.4 170.0 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LEU C:163 C:162 16.0 0.094 I -84.5 -39.7 16.0 0.094 0.0 JLS
 6.500
 N
 CAX
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 LEU A:163 A:162 11.0 0.065 I -68.6 -45.4 11.0 0.065 0.0 AGH
HOH
 4.168
6.661
 CD2
CD1
 CAZ
O
LEU C:163 C:162 10.0 0.059 I -71.6 -39.2 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LEU A:163 A:162 13.0 0.076 I -75.4 -40.8 13.0 0.076 0.0 DB3
 7.102
 CD2
 CAH
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LEU A:163 A:162 14.0 0.082 I -90.5 -34.3 14.0 0.082 0.0 4GH
HOH
 4.107
6.547
 CD2
O
 CAY
O
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LEU C:163 C:162 10.0 0.059 I -77.9 -51.7 10.0 0.059 0.0 JLS
HOH
 6.048
7.831
 CD2
N
 CAX
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 LEU A:163 C:162 9.0 0.053 I -81.5 -43.3 9.0 0.053 0.0 AGH
HOH
 4.348
5.244
 CD2
CD1
 CAZ
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 LEU A:157 A:162 16.0 0.094 I -88.7 -47.9 16.0 0.094 0.0 GCY
HOH
 7.430
5.732
 CD2
C
 CAJ
O
LEU F:157 C:162 15.0 0.088 I -86.0 -48.1 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 LEU A:157 A:162 11.0 0.065 I -93.1 -52.5 11.0 0.065 0.0 AGH
 4.334
 CD2
 CAZ
LEU E:157 E:162 11.0 0.065 I -76.7 -66.0 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 LEU A:157 A:162 6.0 0.035 I -84.0 -47.0 6.0 0.035 0.0 NAG
JLS
HOH
 7.141
5.243
5.762
 C
CD2
CD1
 C1
CAX
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 LEU A:157 A:162 11.0 0.065 I -68.8 -45.2 11.0 0.065 0.0 NAG
FUC
JLS
HOH
 7.052
6.966
6.854
3.294
 C
O
CD2
O
 C1
C6
CAJ
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 LEU A:163 A:162 9.0 0.053 I -66.6 -52.2 9.0 0.053 0.0 LSC
HEX
SO4
UND
HOH
 9.988
4.648
7.967
7.714
6.188
 CD1
CD2
CD1
CD2
CD1
 C11
C6
O3
C11
O
LEU C:163 C:162 13.0 0.076 I -83.1 -44.1 NA NA NA
LEU E:163 E:162 13.0 0.076 I -74.6 -44.7 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 LEU C:161 C:162 10.0 0.059 H -69.0 -47.7 10.0 0.059 0.0 HEX
D12
 7.439
7.827
 CD2
N
 C4
C12
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LEU B:163 A:162 10.0 0.059 I -66.1 -55.8 10.0 0.059 0.0 NAG
CIS
 6.791
5.318
 O
N
 O7
C41
LEU D:163 C:162 11.0 0.065 I -65.8 -57.0 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LEU A:163 A:162 11.0 0.065 I -73.9 -39.1 11.0 0.065 0.0 CIS
HOH
 6.493
5.558
 CD2
CD1
 C24
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 LEU A:180 A:180 9.0 0.053 I -77.4 -44.4