Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 158152080 | . | A | C | CCDS1173.1:NM_001766.3:c.587aAg>aCg_NP_001757.1:p.196K>T | Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1zt4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2005-07-19 | LYS | A:178 | A:178 | 111.0 | 0.555 | H | -29.7 | -62.8 | 111.0 | 0.555 | 0.0 | ||||||
LYS | C:178 | C:178 | 114.0 | 0.57 | H | -31.8 | -61.6 | NA | NA | NA | |||||||||||||
6v7y | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | LYS | A:175 | A:175 | 132.0 | 0.66 | H | -36.7 | -56.4 | 132.0 | 0.66 | 0.0 |
HOH |
4.975 |
O |
O |
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6v7z | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | LYS | A:175 | A:178 | 45.0 | NA | H | -49.4 | -40.5 | 45.0 | NA | NA | ||||||
LYS | C:175 | C:178 | 54.0 | NA | H | -49.8 | -40.4 | NA | NA | NA | |||||||||||||
6v80 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | LYS | A:175 | A:178 | 105.0 | 0.525 | H | -53.9 | -41.3 | 105.0 | 0.525 | 0.0 | ||||||
LYS | F:175 | F:178 | 117.0 | 0.585 | H | -56.1 | -40.2 | NA | NA | NA | |||||||||||||
4wwk | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | LYS | C:179 | C:178 | 52.0 | NA | H | -36.4 | -59.0 | 52.0 | NA | NA | ||||||
3huj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2009-07-28 | LYS | A:179 | A:178 | 128.0 | 0.64 | H | -41.0 | -59.7 | 128.0 | 0.64 | 0.0 |
HOH |
7.582 |
NZ |
O |
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LYS | C:179 | C:178 | 35.0 | NA | H | -58.5 | -52.8 | NA | NA | NA | |||||||||||||
3vwj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | LYS | A:179 | A:178 | 45.0 | NA | -100.9 | -19.8 | 45.0 | NA | NA | |||||||
3vwk | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | LYS | A:179 | A:178 | 59.0 | NA | H | -74.6 | -28.8 | 59.0 | NA | NA | ||||||
4ww2 | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | LYS | C:179 | C:178 | 117.0 | 0.585 | H | -50.7 | -42.9 | 117.0 | 0.585 | 0.0 |
HOH |
4.134 |
CG |
O |
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4en3 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2012-10-31 | LYS | A:179 | C:178 | 120.0 | 0.6 | H | -66.2 | -35.2 | 120.0 | 0.6 | 0.0 | ||||||
3sdx | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2011-10-05 | LYS | A:173 | A:178 | 117.0 | 0.585 | T | -53.7 | -55.7 | 117.0 | 0.585 | 0.0 | ||||||
LYS | F:173 | C:178 | 118.0 | 0.59 | H | -53.0 | -55.7 | NA | NA | NA | |||||||||||||
2po6 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2007-07-03 | LYS | A:173 | A:178 | 103.0 | 0.515 | H | -38.1 | -60.3 | 103.0 | 0.515 | 0.0 | ||||||
LYS | E:173 | E:178 | 70.0 | 0.35 | H | -61.9 | -55.2 | NA | NA | NA | |||||||||||||
4lhu | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2013-10-02 | LYS | A:173 | A:178 | 86.0 | 0.43 | H | -53.8 | -42.2 | 86.0 | 0.43 | 0.0 | ||||||
4wo4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2014-11-26 | LYS | A:173 | A:178 | 119.0 | 0.595 | H | -31.7 | -60.6 | 119.0 | 0.595 | 0.0 |
HOH |
3.956 |
CA |
O |
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3u0p | 1 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | LYS | A:179 | A:178 | 121.0 | 0.605 | H | -40.4 | -49.2 | 121.0 | 0.605 | 0.0 |
GOL HOH |
7.608 8.341 |
O NZ |
O1 O |
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LYS | C:179 | C:178 | 105.0 | 0.525 | H | -42.3 | -48.9 | NA | NA | NA | |||||||||||||
LYS | E:179 | E:178 | 135.0 | 0.675 | H | -66.0 | -15.4 | NA | NA | NA | |||||||||||||
3tzv | 3 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | LYS | C:177 | C:178 | 134.0 | 0.67 | H | -36.4 | -47.4 | 134.0 | 0.67 | 0.0 | ||||||
4mng | 2 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | LYS | B:179 | A:178 | 40.0 | NA | H | -59.8 | -41.0 | 40.0 | NA | NA | ||||||
LYS | D:179 | C:178 | 122.0 | 0.61 | H | -61.1 | -38.1 | NA | NA | NA | |||||||||||||
4mq7 | 1 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | LYS | A:179 | A:178 | 53.0 | NA | H | -69.3 | -24.7 | 53.0 | NA | NA |
HOH |
7.221 |
CB |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p15813-f1 | 1 | P15813 | 100.0 | 0.0 | LYS | A:196 | A:196 | 119.0 | 0.595 | H | -50.5 | -41.8 |