Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152683 . G A CCDS1173.1:NM_001766.3:c.623tGg>tAg_NP_001757.1:p.208W>* Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 TRP A:190 A:190 107.0 0.42 E -158.7 162.4 57.0 0.224 0.196 B:P61769:0.196
 HOH
 9.757
 CZ2
 O
TRP C:190 C:190 114.0 0.447 E -164.6 158.0 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:187 A:187 114.0 0.447 E -153.8 153.6 66.0 0.259 0.188 B:P61769:0.188
 HOH
 3.394
 CB
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:187 A:190 116.0 0.455 E -150.9 162.8 45.0 0.176 0.279 B:P61769:0.278
TRP C:187 C:190 115.0 0.451 E -156.1 165.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 TRP A:187 A:190 108.0 0.424 E -160.1 -179.5 48.0 0.188 0.236 B:P61769:0.235
TRP F:187 F:190 118.0 0.463 E -163.2 -179.0 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 TRP C:191 C:190 117.0 0.459 E -151.8 155.1 51.0 0.2 0.259 D:P61769:0.259
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 TRP A:191 A:190 118.0 0.463 E -144.0 154.0 47.0 0.184 0.279 B:P61769:0.278
 HOH
 4.584
 CZ3
 O
TRP C:191 C:190 117.0 0.459 E -150.7 151.1 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 TRP A:191 A:190 123.0 0.482 E -150.1 154.3 60.0 0.235 0.247 B:P61769:0.247
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 TRP A:191 A:190 126.0 0.494 E -155.0 160.6 60.0 0.235 0.259 B:P61769:0.259
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 TRP C:191 C:190 109.0 0.427 E -154.7 155.2 81.0 0.318 0.109 D:P61769:0.11
 HOH
 3.567
 CD1
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 TRP A:191 C:190 108.0 0.424 E -159.9 149.5 38.0 0.149 0.275 D:P61769:0.275
 HOH
 3.120
 NE1
 O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 TRP A:185 A:190 120.0 0.471 E -160.6 164.9 61.0 0.239 0.232 B:P61769:0.231
 HOH
 7.356
 CB
 O
TRP F:185 C:190 118.0 0.463 E -160.1 165.0 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 TRP A:185 A:190 110.0 0.431 E -142.0 -179.1 48.0 0.188 0.243 B:P61769:0.243
TRP E:185 E:190 109.0 0.427 E -154.2 162.7 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 TRP A:185 A:190 114.0 0.447 E -154.5 148.7 46.0 0.18 0.267 B:P61769:0.267
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 TRP A:185 A:190 118.0 0.463 E -150.6 150.8 39.0 0.153 0.31 B:P61769:0.31
 HOH
 3.571
 CA
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 TRP A:191 A:190 121.0 0.475 E -142.3 155.5 39.0 0.153 0.322 B:P61769:0.322
 HOH
 3.781
 CB
 O
TRP C:191 C:190 121.0 0.475 E -138.8 161.8 NA NA NA
TRP E:191 E:190 196.0 0.769 -142.0 158.6 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 TRP C:189 C:190 102.0 0.4 E -165.7 159.3 62.0 0.243 0.157 D:P61769:0.157
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 TRP B:191 A:190 111.0 0.435 E -150.4 154.7 26.0 0.102 0.333 A:P01887:0.333
TRP D:191 C:190 112.0 0.439 E -152.5 154.3 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 TRP A:191 A:190 112.0 0.439 E -151.8 162.7 26.0 0.102 0.337 B:P01887:0.337
 HOH
 3.398
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 TRP A:208 A:208 115.0 0.451 E -151.3 159.7