Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152778 . C A CCDS1173.1:NM_001766.3:c.718Cgg>Agg_NP_001757.1:p.240R>R Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 ARG A:222 A:222 2.0 NA -34.8 -78.9 2.0 NA NA HOH
 6.615
 C
 O
ARG C:222 C:222 33.0 NA E -113.8 76.4 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:219 A:219 110.0 0.489 -85.4 360.0 110.0 0.489 0.0 HOH
 3.383
 NH2
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:219 A:222 96.0 0.427 E -121.8 93.6 96.0 0.427 0.0
ARG C:219 C:222 44.0 NA E -123.7 92.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:219 A:222 101.0 0.449 E -101.2 78.1 101.0 0.449 0.0
ARG F:219 F:222 101.0 0.449 E -127.6 97.3 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ARG C:223 C:222 106.0 0.471 S -87.8 -47.7 106.0 0.471 0.0
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 ARG A:223 A:222 115.0 0.511 E -110.0 98.9 115.0 0.511 0.0 HOH
 6.177
 NE
 O
ARG C:223 C:222 97.0 0.431 E -146.6 95.2 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ARG A:223 NA:NA DO NA DO DO DO NA NA NA
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ARG A:223 NA:NA DO NA DO DO DO NA NA NA
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ARG C:223 C:222 99.0 0.44 E -120.6 80.2 99.0 0.44 0.0
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 ARG A:223 C:222 199.0 0.884 -53.1 360.0 199.0 0.884 0.0
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 ARG A:217 A:222 108.0 0.48 E -109.4 87.7 108.0 0.48 0.0
ARG F:217 C:222 131.0 0.582 E -113.3 86.1 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 ARG A:217 A:222 76.0 0.338 S -79.3 -108.4 76.0 0.338 0.0
ARG E:217 E:222 4.0 NA -62.2 -78.1 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 ARG A:217 A:222 82.0 0.364 S -91.5 -17.9 82.0 0.364 0.0 HOH
 7.097
 O
 O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 ARG A:217 A:222 96.0 0.427 E -139.7 86.7 96.0 0.427 0.0 HOH
 3.641
 CA
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 ARG A:223 A:222 91.0 0.404 E -111.9 96.8 91.0 0.404 0.0 HOH
 3.726
 NH2
 O
ARG C:223 C:222 83.0 0.369 E -124.1 94.0 NA NA NA
ARG E:223 NA:NA DO NA DO DO DO NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 ARG C:221 C:223 143.0 0.636 S -87.6 -12.4 143.0 0.636 0.0
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ARG B:223 A:222 65.0 0.289 E -114.7 109.6 65.0 0.289 0.0
ARG D:223 C:222 78.0 0.347 E -114.2 109.8 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ARG A:223 A:222 70.0 0.311 E -119.1 120.5 70.0 0.311 0.0 HOH
 3.363
 NE
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ARG A:240 A:240 98.0 0.436 E -125.5 102.8