Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152786 . G A CCDS1173.1:NM_001766.3:c.726gaG>gaA_NP_001757.1:p.242E>E Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 GLU A:224 A:224 133.0 0.7 S -52.8 -36.6 133.0 0.7 0.0 HOH
 6.517
 C
 O
GLU C:224 C:224 184.0 0.968 T -110.6 -6.9 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLU A:221 A:221 72.0 NA 360.0 141.9 72.0 NA NA HOH
 2.648
 O
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLU A:221 A:224 176.0 0.926 T -105.1 8.7 176.0 0.926 0.0
GLU C:221 C:224 96.0 NA T -104.2 5.5 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLU A:221 A:224 143.0 0.753 T -124.9 4.8 143.0 0.753 0.0
GLU F:221 F:224 170.0 0.895 T -104.1 28.6 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLU C:225 C:224 186.0 0.979 S -82.5 -30.5 186.0 0.979 0.0
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 GLU A:225 A:224 100.0 NA T -96.9 3.0 100.0 NA NA
GLU C:225 C:224 93.0 NA T -110.2 -26.9 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLU A:225 NA:NA DO NA DO DO DO NA NA NA
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLU A:225 NA:NA DO NA DO DO DO NA NA NA
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLU C:225 C:224 185.0 0.974 T -112.6 -7.6 185.0 0.974 0.0 HOH
 8.881
 O
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 GLU A:225 NA:NA DO NA DO DO DO NA NA NA
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 GLU A:219 A:224 102.0 NA T -92.4 2.8 102.0 NA NA HOH
 8.368
 CA
 O
GLU F:219 C:224 193.0 1.0 T -92.8 3.4 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 GLU A:219 A:224 100.0 0.526 S 68.0 -17.3 100.0 0.526 0.0
GLU E:219 E:224 128.0 0.674 T -42.8 -21.9 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 GLU A:219 A:224 192.0 1.0 S -90.4 -17.6 192.0 1.0 0.0
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 GLU A:219 A:224 153.0 0.805 T -93.6 9.2 153.0 0.805 0.0 HOH
 3.037
 N
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 GLU A:225 A:224 192.0 1.0 T -105.6 1.7 192.0 1.0 0.0 HOH
 3.229
 O
 O
GLU C:225 C:224 195.0 1.0 T -93.3 3.1 NA NA NA
GLU E:225 NA:NA DO NA DO DO DO NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 GLU C:223 C:225 100.0 NA S -58.7 -11.5 100.0 NA NA
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ASP B:225 A:224 155.0 1.0 T -93.0 2.7 155.0 1.0 0.0
ASP D:225 C:224 152.0 1.0 T -93.4 2.9 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ASP A:225 A:224 158.0 1.0 T -103.4 -1.5 158.0 1.0 0.0 HOH
 5.227
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 GLU A:242 A:242 145.0 0.763 T -89.9 -3.5