Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152887 . G A CCDS1173.1:NM_001766.3:c.827gGc>gAc_NP_001757.1:p.276G>D Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 GLY A:258 A:258 58.0 0.773 S 75.6 -12.0 58.0 0.773 0.0 HOH
 9.835
 O
 O
GLY C:258 C:258 57.0 0.76 T 76.2 -6.1 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLY A:255 A:255 47.0 0.627 -130.0 44.6 47.0 0.627 0.0 HOH
 4.204
 N
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLY A:255 A:258 51.0 0.68 T 90.4 6.8 51.0 0.68 0.0
GLY C:255 C:258 62.0 0.827 S 82.4 16.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLY A:255 A:258 52.0 0.693 T 75.1 -5.5 52.0 0.693 0.0
GLY F:255 F:258 42.0 0.56 S 50.8 49.7 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLY C:259 C:258 44.0 0.587 T 90.7 -27.8 44.0 0.587 0.0
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 GLY A:259 A:258 56.0 0.747 S 92.1 22.2 56.0 0.747 0.0 HOH
 4.713
 N
 O
GLY C:259 C:258 48.0 0.64 S 110.6 -31.1 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLY A:259 NA:NA DO NA DO DO DO NA NA NA
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLY A:259 NA:NA DO NA DO DO DO NA NA NA
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLY C:259 C:258 58.0 0.773 T 80.2 8.0 58.0 0.773 0.0 HOH
 9.079
 N
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 GLY A:259 C:258 53.0 0.707 90.8 -15.1 53.0 0.707 0.0
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 GLY A:253 A:258 53.0 0.707 S -114.5 135.3 53.0 0.707 0.0
GLY F:253 NA:NA DO NA DO DO DO NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 GLY A:253 A:258 43.0 0.573 T 108.2 -24.2 43.0 0.573 0.0
GLY E:253 E:258 58.0 0.773 T 68.4 32.2 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 GLY A:253 A:258 56.0 0.747 T 66.0 48.1 56.0 0.747 0.0 HOH
 3.361
 C
 O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 GLY A:253 A:258 36.0 0.48 T 96.9 -7.2 36.0 0.48 0.0 HOH
 2.628
 O
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 GLY A:259 A:258 51.0 0.68 T 93.8 -12.0 51.0 0.68 0.0 HOH
 2.658
 O
 O
GLY C:259 C:258 39.0 0.52 T 104.4 -23.2 NA NA NA
GLY E:259 NA:NA DO NA DO DO DO NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 GLY C:257 C:259 49.0 0.653 -74.2 123.3 49.0 0.653 0.0
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 GLY B:259 A:258 46.0 0.613 T 101.5 -21.3 46.0 0.613 0.0
GLY D:259 C:258 44.0 0.587 T 101.5 -21.5 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 GLY A:259 A:258 50.0 0.667 T 94.3 -7.5 50.0 0.667 0.0 HOH
 2.974
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 GLY A:276 A:276 50.0 0.667 T 78.4 0.4