Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152910 . A C CCDS1173.1:NM_001766.3:c.850Agc>Cgc_NP_001757.1:p.284S>R Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 SER A:266 A:266 50.0 0.435 T -31.3 -40.0 50.0 0.435 0.0
SER C:266 C:266 59.0 0.513 T -31.4 -38.6 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 SER A:263 A:263 46.0 0.4 G -51.5 -40.2 46.0 0.4 0.0 HOH
 3.919
 O
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 SER A:263 A:266 62.0 0.539 G -58.8 -24.3 62.0 0.539 0.0
SER C:263 C:266 62.0 0.539 T -64.5 -17.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 SER A:263 A:266 69.0 0.6 T -64.0 -25.7 69.0 0.6 0.0
SER F:263 F:266 72.0 0.626 S -77.0 -8.4 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 SER C:267 C:266 54.0 0.47 T -57.0 -27.5 54.0 0.47 0.0
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 SER A:267 A:266 56.0 0.487 T -88.7 15.4 56.0 0.487 0.0 HOH
 7.503
 O
 O
SER C:267 C:266 63.0 0.548 T -62.5 -31.3 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 SER A:267 A:266 57.0 0.496 S -70.7 -34.6 57.0 0.496 0.0
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 SER A:267 A:266 69.0 0.6 T -63.3 -38.2 69.0 0.6 0.0 HOH
 7.125
 O
 O
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 SER C:267 C:266 53.0 0.461 G -55.2 -35.3 53.0 0.461 0.0 HOH
 4.023
 CA
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 SER A:267 C:266 68.0 0.591 T -56.2 -34.8 68.0 0.591 0.0 HOH
 6.525
 O
 O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 SER A:261 A:266 60.0 0.522 S -91.0 9.7 60.0 0.522 0.0
SER F:261 C:266 61.0 0.53 S -91.6 8.8 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 SER A:261 A:266 59.0 0.513 T -62.2 -32.8 59.0 0.513 0.0
SER E:261 E:266 66.0 0.574 T -59.7 -32.7 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 SER A:261 A:266 66.0 0.574 S -66.2 -40.2 66.0 0.574 0.0
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 SER A:261 A:266 74.0 0.643 T -53.7 -30.0 74.0 0.643 0.0
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 SER A:267 A:266 66.0 0.574 G -56.1 -29.7 66.0 0.574 0.0 HOH
 2.503
 N
 O
SER C:267 C:266 54.0 0.47 T -63.5 -22.7 NA NA NA
SER E:267 E:266 50.0 0.435 S 40.6 44.5 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 SER C:265 C:267 53.0 0.461 S -96.4 -2.7 53.0 0.461 0.0
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 SER B:267 A:266 73.0 0.635 G -66.4 -21.5 73.0 0.635 0.0
SER D:267 C:266 70.0 0.609 G -66.7 -21.2 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 SER A:267 A:266 72.0 0.626 G -63.0 -29.3 72.0 0.626 0.0 HOH
 9.547
 OG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 SER A:284 A:284 62.0 0.539 G -58.6 -33.0