Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 158152911 | . | G | A | CCDS1173.1:NM_001766.3:c.851aGc>aAc_NP_001757.1:p.284S>N | Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1zt4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2005-07-19 | SER | A:266 | A:266 | 50.0 | 0.435 | T | -31.3 | -40.0 | 50.0 | 0.435 | 0.0 | ||||||
SER | C:266 | C:266 | 59.0 | 0.513 | T | -31.4 | -38.6 | NA | NA | NA | |||||||||||||
6v7y | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | SER | A:263 | A:263 | 46.0 | 0.4 | G | -51.5 | -40.2 | 46.0 | 0.4 | 0.0 |
HOH |
3.919 |
O |
O |
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6v7z | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | SER | A:263 | A:266 | 62.0 | 0.539 | G | -58.8 | -24.3 | 62.0 | 0.539 | 0.0 | ||||||
SER | C:263 | C:266 | 62.0 | 0.539 | T | -64.5 | -17.0 | NA | NA | NA | |||||||||||||
6v80 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | SER | A:263 | A:266 | 69.0 | 0.6 | T | -64.0 | -25.7 | 69.0 | 0.6 | 0.0 | ||||||
SER | F:263 | F:266 | 72.0 | 0.626 | S | -77.0 | -8.4 | NA | NA | NA | |||||||||||||
4wwk | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | SER | C:267 | C:266 | 54.0 | 0.47 | T | -57.0 | -27.5 | 54.0 | 0.47 | 0.0 | ||||||
3huj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2009-07-28 | SER | A:267 | A:266 | 56.0 | 0.487 | T | -88.7 | 15.4 | 56.0 | 0.487 | 0.0 |
HOH |
7.503 |
O |
O |
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SER | C:267 | C:266 | 63.0 | 0.548 | T | -62.5 | -31.3 | NA | NA | NA | |||||||||||||
3vwj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | SER | A:267 | A:266 | 57.0 | 0.496 | S | -70.7 | -34.6 | 57.0 | 0.496 | 0.0 | ||||||
3vwk | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | SER | A:267 | A:266 | 69.0 | 0.6 | T | -63.3 | -38.2 | 69.0 | 0.6 | 0.0 |
HOH |
7.125 |
O |
O |
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4ww2 | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | SER | C:267 | C:266 | 53.0 | 0.461 | G | -55.2 | -35.3 | 53.0 | 0.461 | 0.0 |
HOH |
4.023 |
CA |
O |
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4en3 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2012-10-31 | SER | A:267 | C:266 | 68.0 | 0.591 | T | -56.2 | -34.8 | 68.0 | 0.591 | 0.0 |
HOH |
6.525 |
O |
O |
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3sdx | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2011-10-05 | SER | A:261 | A:266 | 60.0 | 0.522 | S | -91.0 | 9.7 | 60.0 | 0.522 | 0.0 | ||||||
SER | F:261 | C:266 | 61.0 | 0.53 | S | -91.6 | 8.8 | NA | NA | NA | |||||||||||||
2po6 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2007-07-03 | SER | A:261 | A:266 | 59.0 | 0.513 | T | -62.2 | -32.8 | 59.0 | 0.513 | 0.0 | ||||||
SER | E:261 | E:266 | 66.0 | 0.574 | T | -59.7 | -32.7 | NA | NA | NA | |||||||||||||
4lhu | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2013-10-02 | SER | A:261 | A:266 | 66.0 | 0.574 | S | -66.2 | -40.2 | 66.0 | 0.574 | 0.0 | ||||||
4wo4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2014-11-26 | SER | A:261 | A:266 | 74.0 | 0.643 | T | -53.7 | -30.0 | 74.0 | 0.643 | 0.0 | ||||||
3u0p | 1 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | SER | A:267 | A:266 | 66.0 | 0.574 | G | -56.1 | -29.7 | 66.0 | 0.574 | 0.0 |
HOH |
2.503 |
N |
O |
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SER | C:267 | C:266 | 54.0 | 0.47 | T | -63.5 | -22.7 | NA | NA | NA | |||||||||||||
SER | E:267 | E:266 | 50.0 | 0.435 | S | 40.6 | 44.5 | NA | NA | NA | |||||||||||||
3tzv | 3 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | SER | C:265 | C:267 | 53.0 | 0.461 | S | -96.4 | -2.7 | 53.0 | 0.461 | 0.0 | ||||||
4mng | 2 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | SER | B:267 | A:266 | 73.0 | 0.635 | G | -66.4 | -21.5 | 73.0 | 0.635 | 0.0 | ||||||
SER | D:267 | C:266 | 70.0 | 0.609 | G | -66.7 | -21.2 | NA | NA | NA | |||||||||||||
4mq7 | 1 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | SER | A:267 | A:266 | 72.0 | 0.626 | G | -63.0 | -29.3 | 72.0 | 0.626 | 0.0 |
HOH |
9.547 |
OG |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p15813-f1 | 1 | P15813 | 100.0 | 0.0 | SER | A:284 | A:284 | 62.0 | 0.539 | G | -58.6 | -33.0 |