Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 115480864 | . | A | C | CCDS7580.1:NM_033338.5:c.283Atg>Ctg_NP_203124.1:p.95M>L | Homo sapiens caspase 7 (CASP7), transcript variant a, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5v6u | 1 | P55210 | 100.0 | 0.0 |
X-RAY |
2017-10-18 | MET | A:62 | A:62 | 28.0 | 0.151 | -112.5 | 4.9 | 28.0 | 0.151 | 0.0 |
HOH |
3.388 |
O |
O |
|||
MET | B:62 | B:62 | 29.0 | 0.157 | -108.2 | 8.7 | 29.0 | 0.157 | 0.0 |
HOH |
2.538 |
N |
O |
||||||||||
5v6z | 1 | P55210 | 100.0 | 0.0 |
X-RAY |
2018-03-21 | MET | A:62 | A:62 | 25.0 | 0.135 | -105.1 | 12.5 | 25.0 | 0.135 | 0.0 |
HOH |
4.735 |
CE |
O |
|||
MET | B:62 | B:62 | 41.0 | 0.222 | -97.1 | 10.2 | 41.0 | 0.222 | 0.0 |
HOH |
2.526 |
N |
O |
||||||||||
4fdl | 1 | P55210 | 100.0 | 0.0 |
X-RAY |
2012-08-01 | MET | A:64 | A:62 | 39.0 | 0.211 | -111.2 | 19.4 | 39.0 | 0.211 | 0.0 |
HOH |
5.254 |
SD |
O |
|||
MET | B:64 | B:62 | 26.0 | 0.141 | -100.2 | -5.0 | 26.0 | 0.141 | 0.0 |
HOH |
3.555 |
O |
O |
||||||||||
1kmc | 1 | P55210 | 99.67 | 0.0 |
X-RAY |
2002-01-16 | MET | A:62 | A:155 | 14.0 | 0.076 | -103.1 | 6.7 | 14.0 | 0.076 | 0.0 |
HOH |
4.283 |
O |
O |
|||
MET | B:62 | B:155 | 35.0 | 0.189 | -103.2 | 6.3 | 35.0 | 0.189 | 0.0 | ||||||||||||||
1f1j | 1 | P55210 | 99.67 | 0.0 |
X-RAY |
2001-05-23 | MET | A:64 | A:62 | 41.0 | 0.222 | -104.4 | 13.0 | 41.0 | 0.222 | 0.0 |
HOH |
3.092 |
O |
O |
|||
MET | B:64 | B:362 | 45.0 | 0.243 | -95.8 | 11.5 | NA | NA | NA | ||||||||||||||
3r5k | 1 | P55210 | 99.01 | 0.0 |
X-RAY |
2011-06-29 | MET | A:62 | A:62 | 28.0 | 0.151 | -100.9 | 16.6 | 28.0 | 0.151 | 0.0 |
HOH |
3.775 |
O |
O |
|||
MET | B:62 | B:362 | 20.0 | 0.108 | -116.5 | 15.9 | 20.0 | 0.108 | 0.0 |
FMT HOH |
8.185 3.195 |
CG O |
C O |
||||||||||
1i4o | 1 | P55210 | 100.0 | 0.0 |
X-RAY |
2001-03-21 | MET | A:39 | A:62 | 24.0 | 0.13 | -112.3 | 9.5 | 24.0 | 0.13 | 0.0 |
HOH |
2.919 |
O |
O |
|||
MET | B:39 | B:62 | 23.0 | 0.124 | -111.1 | 11.0 | NA | NA | NA | ||||||||||||||
1gqf | 1 | P55210 | 99.61 | 0.0 |
X-RAY |
2002-01-04 | MET | A:16 | A:155 | 21.0 | 0.114 | -103.3 | -1.9 | 21.0 | 0.114 | 0.0 |
HOH |
6.259 |
N |
O |
|||
MET | B:16 | B:155 | 8.0 | 0.043 | -100.7 | 5.4 | 8.0 | 0.043 | 0.0 | ||||||||||||||
1shj | 1 | P55210 | 99.61 | 0.0 |
X-RAY |
2004-08-17 | MET | A:13 | A:62 | 25.0 | 0.135 | -102.4 | 18.8 | 25.0 | 0.135 | 0.0 | |||||||
MET | B:13 | B:62 | 27.0 | 0.146 | -114.7 | 9.9 | 27.0 | 0.146 | 0.0 | ||||||||||||||
4hq0 | 1 | P55210 | 97.34 | 0.0 |
X-RAY |
2013-09-11 | MET | A:17 | A:62 | 23.0 | 0.124 | -94.6 | 3.0 | 23.0 | 0.124 | 0.0 | |||||||
MET | B:17 | B:62 | 39.0 | 0.211 | -109.0 | 11.6 | 39.0 | 0.211 | 0.0 | ||||||||||||||
4hqr | 1 | P55210 | 97.34 | 0.0 |
X-RAY |
2013-09-11 | MET | A:17 | A:62 | 30.0 | 0.162 | -99.5 | 8.6 | 30.0 | 0.162 | 0.0 | |||||||
MET | B:17 | B:62 | 23.0 | 0.124 | -113.7 | 23.5 | 23.0 | 0.124 | 0.0 | ||||||||||||||
1k86 | 1 | P55210 | 99.6 | 0.0 |
X-RAY |
2001-11-21 | MET | A:12 | A:62 | 14.0 | 0.076 | -109.3 | 12.3 | 14.0 | 0.076 | 0.0 |
HOH |
7.582 |
O |
O |
|||
MET | B:12 | B:62 | 22.0 | 0.119 | -103.5 | 27.5 | 22.0 | 0.119 | 0.0 |
HOH |
3.169 |
O |
O |
||||||||||
3h1p | 1 | P55210 | 99.21 | 0.0 |
X-RAY |
2009-06-30 | MET | A:13 | A:62 | 33.0 | 0.178 | -106.4 | 9.5 | 33.0 | 0.178 | 0.0 |
HOH |
3.358 |
CE |
O |
|||
MET | B:13 | B:62 | 20.0 | 0.108 | -108.3 | 12.7 | 20.0 | 0.108 | 0.0 |
HOH |
3.241 |
CG |
O |
||||||||||
1k88 | 1 | P55210 | 99.21 | 0.0 |
X-RAY |
2001-11-21 | MET | A:12 | A:62 | 26.0 | 0.141 | -90.8 | 11.6 | 26.0 | 0.141 | 0.0 |
HOH |
3.206 |
CG |
O |
|||
MET | B:12 | B:62 | 35.0 | 0.189 | -109.9 | 13.1 | 35.0 | 0.189 | 0.0 |
HOH |
2.679 |
N |
O |
||||||||||
4fea | 1 | P55210 | 100.0 | 0.0 |
X-RAY |
2012-08-01 | MET | A:6 | A:62 | 10.0 | 0.054 | -134.5 | 3.2 | 10.0 | 0.054 | 0.0 | |||||||
MET | B:6 | B:62 | 36.0 | 0.195 | -106.5 | -12.2 | 36.0 | 0.195 | 0.0 | ||||||||||||||
4jj8 | 1 | P55210 | 100.0 | 0.0 |
X-RAY |
2013-06-12 | MET | A:6 | A:62 | 40.0 | 0.216 | -107.5 | 16.6 | 40.0 | 0.216 | 0.0 |
HOH |
3.746 |
O |
O |
|||
MET | B:6 | B:62 | 38.0 | 0.205 | -107.5 | 15.4 | NA | NA | NA | ||||||||||||||
4jr1 | 1 | P55210 | 99.6 | 0.0 |
X-RAY |
2013-05-08 | MET | A:9 | A:62 | 22.0 | 0.119 | -105.7 | 8.9 | 22.0 | 0.119 | 0.0 |
HOH |
2.976 |
N |
O |
|||
MET | B:9 | B:62 | 39.0 | 0.211 | -104.7 | 14.0 | 39.0 | 0.211 | 0.0 |
HOH |
3.315 |
CG |
O |
||||||||||
4jr2 | 1 | P55210 | 99.6 | 0.0 |
X-RAY |
2013-05-08 | MET | A:9 | A:62 | 36.0 | 0.195 | -106.9 | 2.2 | 36.0 | 0.195 | 0.0 |
HOH |
2.978 |
O |
O |
|||
MET | B:9 | B:62 | 42.0 | 0.227 | -108.6 | 6.1 | 42.0 | 0.227 | 0.0 |
HOH |
2.894 |
O |
O |
||||||||||
1shl | 1 | P55210 | 95.55 | 1e-177 |
X-RAY |
2004-08-17 | MET | A:6 | A:62 | 25.0 | 0.135 | -96.1 | 6.1 | 25.0 | 0.135 | 0.0 | |||||||
MET | B:6 | B:62 | 33.0 | 0.178 | -114.0 | 9.0 | 33.0 | 0.178 | 0.0 | ||||||||||||||
4zvo | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-04-20 | MET | A:62 | A:62 | 95.0 | 0.514 | -99.5 | 11.0 | 25.0 | 0.135 | 0.379 |
B:P55210:0.378 |
HOH |
4.517 |
O |
O |
||
MET | C:62 | C:362 | 96.0 | 0.519 | -100.1 | 11.2 | 25.0 | 0.135 | 0.384 |
D:P55210:0.384 |
HOH |
6.784 |
O |
O |
|||||||||
4zvp | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-04-20 | MET | A:62 | A:62 | 90.0 | 0.486 | -107.6 | 13.7 | 23.0 | 0.124 | 0.362 |
B:P55210:0.362 |
HOH |
3.182 |
CE |
O |
||
MET | C:62 | C:362 | 99.0 | 0.535 | -107.4 | 15.6 | 28.0 | 0.151 | 0.384 |
D:P55210:0.384 |
HOH |
3.200 |
CE |
O |
|||||||||
4zvq | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-04-20 | MET | A:62 | A:62 | 93.0 | 0.503 | -108.7 | 12.9 | 25.0 | 0.135 | 0.368 |
B:P55210:0.368 |
HOH |
2.661 |
N |
O |
||
MET | C:62 | C:362 | 98.0 | 0.53 | -108.0 | 12.0 | 27.0 | 0.146 | 0.384 |
D:P55210:0.384 |
HOH |
2.601 |
N |
O |
|||||||||
4zvr | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-04-20 | MET | A:62 | A:62 | 93.0 | 0.503 | -110.1 | 11.3 | 24.0 | 0.13 | 0.373 |
B:P55210:0.373 |
HOH |
2.973 |
N |
O |
||
MET | C:62 | C:362 | 94.0 | 0.508 | -107.7 | 12.7 | 24.0 | 0.13 | 0.378 |
D:P55210:0.378 |
HOH |
2.733 |
N |
O |
|||||||||
4zvs | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-04-20 | MET | A:62 | A:62 | 96.0 | 0.519 | -108.8 | 9.4 | 27.0 | 0.146 | 0.373 |
B:P55210:0.373 |
HOH |
2.947 |
N |
O |
||
MET | C:62 | C:362 | 97.0 | 0.524 | -107.9 | 9.6 | 36.0 | 0.195 | 0.329 |
D:P55210:0.33 |
HOH |
2.520 |
N |
O |
|||||||||
4zvt | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-04-20 | MET | A:62 | A:62 | 95.0 | 0.514 | -99.9 | 9.3 | 26.0 | 0.141 | 0.373 |
B:P55210:0.373 |
||||||
MET | C:62 | C:362 | 98.0 | 0.53 | -99.7 | 7.0 | 34.0 | 0.184 | 0.346 |
D:P55210:0.346 |
HOH |
3.183 |
O |
O |
|||||||||
4zvu | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-04-20 | MET | A:62 | A:62 | 93.0 | 0.503 | -100.1 | 6.0 | 27.0 | 0.146 | 0.357 |
B:P55210:0.357 |
HOH |
3.050 |
N |
O |
||
MET | C:62 | C:362 | 98.0 | 0.53 | -99.3 | 7.4 | 39.0 | 0.211 | 0.319 |
D:P55210:0.319 |
HOH |
6.766 |
O |
O |
|||||||||
5ic6 | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2016-07-20 | MET | A:62 | A:62 | 98.0 | 0.53 | -109.7 | -2.3 | 56.0 | 0.303 | 0.227 |
B:P55210:0.227 |
||||||
MET | C:62 | C:62 | 103.0 | 0.557 | -109.0 | -1.3 | NA | NA | NA | ||||||||||||||
5k20 | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2017-01-11 | MET | A:62 | A:62 | 100.0 | 0.541 | -106.9 | 9.3 | 26.0 | 0.141 | 0.4 |
B:P55210:0.4 |
HOH |
3.012 |
N |
O |
||
MET | C:62 | C:362 | 98.0 | 0.53 | -106.2 | 5.8 | 40.0 | 0.216 | 0.314 |
D:P55210:0.314 |
FMT HOH |
3.178 3.345 |
O CG |
O2 O |
|||||||||
6cl1 | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2019-03-06 | MET | A:62 | A:62 | 96.0 | 0.519 | -110.0 | 10.1 | 40.0 | 0.216 | 0.303 |
B:P55210:0.303 |
HOH |
2.891 |
N |
O |
||
MET | C:62 | C:62 | 98.0 | 0.53 | -108.3 | 14.4 | 41.0 | 0.222 | 0.308 |
D:P55210:0.308 |
HOH |
8.431 |
O |
O |
|||||||||
6cl2 | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2019-03-06 | MET | A:62 | A:62 | 97.0 | 0.524 | -112.9 | 6.9 | 40.0 | 0.216 | 0.308 |
B:P55210:0.308 |
||||||
MET | C:62 | C:62 | 98.0 | 0.53 | -104.8 | 14.0 | 38.0 | 0.205 | 0.325 |
D:P55210:0.324 |
HOH |
2.638 |
N |
O |
|||||||||
6x8j | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2021-06-02 | MET | A:62 | A:62 | 98.0 | 0.53 | -111.4 | 12.1 | 39.0 | 0.211 | 0.319 |
B:P55210:0.319 |
HOH |
3.276 |
CE |
O |
||
MET | C:62 | B:62 | 96.0 | 0.519 | -111.4 | 12.2 | 42.0 | 0.227 | 0.292 |
D:P55210:0.292 |
HOH |
5.595 |
CE |
O |
|||||||||
6x8l | 1 | P55210 | 100.0 | 1e-146 |
X-RAY |
2021-06-02 | MET | A:62 | A:62 | 98.0 | 0.53 | -106.0 | 17.5 | 37.0 | 0.2 | 0.33 |
B:P55210:0.33 |
HOH |
3.319 |
CE |
O |
||
MET | C:62 | B:62 | 96.0 | 0.519 | -106.7 | 14.2 | 38.0 | 0.205 | 0.314 |
D:P55210:0.314 |
HOH |
3.358 |
CE |
O |
|||||||||
4jb8 | 1 | P55210 | 100.0 | 1e-128 |
X-RAY |
2013-08-21 | MET | A:39 | A:62 | 97.0 | 0.524 | -117.6 | 6.3 | 33.0 | 0.178 | 0.346 |
B:P55210:0.346 |
HOH |
3.075 |
N |
O |
||
4lsz | 1 | P55210 | 100.0 | 1e-128 |
X-RAY |
2014-07-02 | MET | A:39 | A:62 | 85.0 | 0.459 | -103.4 | 2.0 | 12.0 | 0.065 | 0.394 |
B:P55210:0.395 |
HOH |
4.069 |
CG |
O |
||
MET | C:39 | C:62 | 93.0 | 0.503 | -104.8 | 3.7 | 14.0 | 0.076 | 0.427 |
D:P55210:0.427 |
HOH |
3.846 |
CE |
O |
|||||||||
2ql5 | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2007-08-28 | MET | A:39 | A:62 | 94.0 | 0.508 | -99.8 | 6.4 | 25.0 | 0.135 | 0.373 |
B:P55210:0.373 |
HOH |
3.500 |
CG |
O |
||
MET | C:39 | C:362 | 97.0 | 0.524 | -107.0 | 14.0 | 27.0 | 0.146 | 0.378 |
D:P55210:0.378 |
HOH |
3.060 |
O |
O |
|||||||||
2ql7 | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2007-08-28 | MET | A:39 | A:62 | 96.0 | 0.519 | -107.7 | 10.9 | 24.0 | 0.13 | 0.389 |
B:P55210:0.389 |
HOH |
3.012 |
N |
O |
||
MET | C:39 | C:362 | 97.0 | 0.524 | -105.5 | 12.5 | 26.0 | 0.141 | 0.383 |
D:P55210:0.384 |
HOH |
3.027 |
O |
O |
|||||||||
2ql9 | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2007-08-28 | MET | A:39 | A:62 | 100.0 | 0.541 | -105.1 | 10.7 | 20.0 | 0.108 | 0.433 |
B:P55210:0.432 |
HOH |
2.750 |
N |
O |
||
MET | C:39 | C:362 | 100.0 | 0.541 | -108.3 | 12.9 | 20.0 | 0.108 | 0.433 |
D:P55210:0.432 |
HOH |
2.900 |
O |
O |
|||||||||
2qlb | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2007-08-28 | MET | A:39 | A:62 | 94.0 | 0.508 | -107.9 | 6.9 | 22.0 | 0.119 | 0.389 |
B:P55210:0.389 |
HOH |
3.056 |
N |
O |
||
MET | C:39 | C:362 | 92.0 | 0.497 | -106.0 | 2.4 | 28.0 | 0.151 | 0.346 |
D:P55210:0.346 |
HOH |
2.779 |
N |
O |
|||||||||
2qlf | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2007-08-28 | MET | A:39 | A:62 | 89.0 | 0.481 | -101.8 | 6.2 | 22.0 | 0.119 | 0.362 |
B:P55210:0.362 |
HOH |
4.161 |
O |
O |
||
MET | C:39 | C:362 | 97.0 | 0.524 | -101.4 | 19.5 | 28.0 | 0.151 | 0.373 |
D:P55210:0.373 |
HOH |
3.042 |
CG |
O |
|||||||||
2qlj | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2007-08-28 | MET | A:39 | A:62 | 96.0 | 0.519 | -108.7 | 5.9 | 25.0 | 0.135 | 0.384 |
B:P55210:0.384 |
HOH |
4.095 |
O |
O |
||
MET | C:39 | C:362 | 96.0 | 0.519 | -101.5 | 9.1 | 27.0 | 0.146 | 0.373 |
D:P55210:0.373 |
HOH |
2.725 |
N |
O |
|||||||||
3edr | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2008-10-28 | MET | A:39 | A:62 | 91.0 | 0.492 | -104.8 | 7.5 | 24.0 | 0.13 | 0.362 |
B:P55210:0.362 |
HOH |
3.532 |
O |
O |
||
MET | C:39 | C:362 | 95.0 | 0.514 | -97.3 | 4.4 | 25.0 | 0.135 | 0.379 |
D:P55210:0.378 |
HOH |
2.700 |
N |
O |
|||||||||
3ibc | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2009-09-01 | MET | A:39 | A:62 | 98.0 | 0.53 | -103.2 | 18.5 | 21.0 | 0.114 | 0.416 |
B:P55210:0.416 |
HOH |
3.486 |
O |
O |
||
MET | C:39 | C:362 | 101.0 | 0.546 | -102.2 | 3.3 | 29.0 | 0.157 | 0.389 |
D:P55210:0.389 |
HOH |
3.436 |
CG |
O |
|||||||||
3ibf | 1 | P55210 | 100.0 | 4e-127 |
X-RAY |
2009-09-01 | MET | A:39 | A:62 | 103.0 | 0.557 | -102.1 | 8.6 | 23.0 | 0.124 | 0.433 |
B:P55210:0.432 |
HOH |
3.540 |
O |
O |
||
MET | C:39 | C:362 | 104.0 | 0.562 | -106.3 | 23.3 | 23.0 | 0.124 | 0.438 |
D:P55210:0.438 |
HOH |
2.741 |
N |
O |
|||||||||
1i51 | 1 | P55210 | 99.32 | 6e-107 |
X-RAY |
2002-02-23 | MET | A:12 | A:62 | 103.0 | 0.557 | -105.4 | 16.4 | 16.0 | 0.086 | 0.471 |
B:P55210:0.47 |
||||||
MET | C:12 | C:62 | 104.0 | 0.562 | -108.5 | 21.6 | 21.0 | 0.114 | 0.448 |
D:P55210:0.449 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p55210-f1 | 1 | P55210 | 100.0 | 0.0 | MET | A:62 | A:62 | 20.0 | 0.108 | -107.5 | -0.7 |