Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 115480864 . A C CCDS7580.1:NM_033338.5:c.283Atg>Ctg_NP_203124.1:p.95M>L Homo sapiens caspase 7 (CASP7), transcript variant a, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5v6u 1 P55210 100.0 0.0 X-RAY
2017-10-18 MET A:62 A:62 28.0 0.151 -112.5 4.9 28.0 0.151 0.0 HOH
3.388
O
O
MET B:62 B:62 29.0 0.157 -108.2 8.7 29.0 0.157 0.0 HOH
2.538
N
O
5v6z 1 P55210 100.0 0.0 X-RAY
2018-03-21 MET A:62 A:62 25.0 0.135 -105.1 12.5 25.0 0.135 0.0 HOH
4.735
CE
O
MET B:62 B:62 41.0 0.222 -97.1 10.2 41.0 0.222 0.0 HOH
2.526
N
O
4fdl 1 P55210 100.0 0.0 X-RAY
2012-08-01 MET A:64 A:62 39.0 0.211 -111.2 19.4 39.0 0.211 0.0 HOH
5.254
SD
O
MET B:64 B:62 26.0 0.141 -100.2 -5.0 26.0 0.141 0.0 HOH
3.555
O
O
1kmc 1 P55210 99.67 0.0 X-RAY
2002-01-16 MET A:62 A:155 14.0 0.076 -103.1 6.7 14.0 0.076 0.0 HOH
4.283
O
O
MET B:62 B:155 35.0 0.189 -103.2 6.3 35.0 0.189 0.0
1f1j 1 P55210 99.67 0.0 X-RAY
2001-05-23 MET A:64 A:62 41.0 0.222 -104.4 13.0 41.0 0.222 0.0 HOH
3.092
O
O
MET B:64 B:362 45.0 0.243 -95.8 11.5 NA NA NA
3r5k 1 P55210 99.01 0.0 X-RAY
2011-06-29 MET A:62 A:62 28.0 0.151 -100.9 16.6 28.0 0.151 0.0 HOH
3.775
O
O
MET B:62 B:362 20.0 0.108 -116.5 15.9 20.0 0.108 0.0 FMT
HOH
8.185
3.195
CG
O
C
O
1i4o 1 P55210 100.0 0.0 X-RAY
2001-03-21 MET A:39 A:62 24.0 0.13 -112.3 9.5 24.0 0.13 0.0 HOH
2.919
O
O
MET B:39 B:62 23.0 0.124 -111.1 11.0 NA NA NA
1gqf 1 P55210 99.61 0.0 X-RAY
2002-01-04 MET A:16 A:155 21.0 0.114 -103.3 -1.9 21.0 0.114 0.0 HOH
6.259
N
O
MET B:16 B:155 8.0 0.043 -100.7 5.4 8.0 0.043 0.0
1shj 1 P55210 99.61 0.0 X-RAY
2004-08-17 MET A:13 A:62 25.0 0.135 -102.4 18.8 25.0 0.135 0.0
MET B:13 B:62 27.0 0.146 -114.7 9.9 27.0 0.146 0.0
4hq0 1 P55210 97.34 0.0 X-RAY
2013-09-11 MET A:17 A:62 23.0 0.124 -94.6 3.0 23.0 0.124 0.0
MET B:17 B:62 39.0 0.211 -109.0 11.6 39.0 0.211 0.0
4hqr 1 P55210 97.34 0.0 X-RAY
2013-09-11 MET A:17 A:62 30.0 0.162 -99.5 8.6 30.0 0.162 0.0
MET B:17 B:62 23.0 0.124 -113.7 23.5 23.0 0.124 0.0
1k86 1 P55210 99.6 0.0 X-RAY
2001-11-21 MET A:12 A:62 14.0 0.076 -109.3 12.3 14.0 0.076 0.0 HOH
7.582
O
O
MET B:12 B:62 22.0 0.119 -103.5 27.5 22.0 0.119 0.0 HOH
3.169
O
O
3h1p 1 P55210 99.21 0.0 X-RAY
2009-06-30 MET A:13 A:62 33.0 0.178 -106.4 9.5 33.0 0.178 0.0 HOH
3.358
CE
O
MET B:13 B:62 20.0 0.108 -108.3 12.7 20.0 0.108 0.0 HOH
3.241
CG
O
1k88 1 P55210 99.21 0.0 X-RAY
2001-11-21 MET A:12 A:62 26.0 0.141 -90.8 11.6 26.0 0.141 0.0 HOH
3.206
CG
O
MET B:12 B:62 35.0 0.189 -109.9 13.1 35.0 0.189 0.0 HOH
2.679
N
O
4fea 1 P55210 100.0 0.0 X-RAY
2012-08-01 MET A:6 A:62 10.0 0.054 -134.5 3.2 10.0 0.054 0.0
MET B:6 B:62 36.0 0.195 -106.5 -12.2 36.0 0.195 0.0
4jj8 1 P55210 100.0 0.0 X-RAY
2013-06-12 MET A:6 A:62 40.0 0.216 -107.5 16.6 40.0 0.216 0.0 HOH
3.746
O
O
MET B:6 B:62 38.0 0.205 -107.5 15.4 NA NA NA
4jr1 1 P55210 99.6 0.0 X-RAY
2013-05-08 MET A:9 A:62 22.0 0.119 -105.7 8.9 22.0 0.119 0.0 HOH
2.976
N
O
MET B:9 B:62 39.0 0.211 -104.7 14.0 39.0 0.211 0.0 HOH
3.315
CG
O
4jr2 1 P55210 99.6 0.0 X-RAY
2013-05-08 MET A:9 A:62 36.0 0.195 -106.9 2.2 36.0 0.195 0.0 HOH
2.978
O
O
MET B:9 B:62 42.0 0.227 -108.6 6.1 42.0 0.227 0.0 HOH
2.894
O
O
1shl 1 P55210 95.55 1e-177 X-RAY
2004-08-17 MET A:6 A:62 25.0 0.135 -96.1 6.1 25.0 0.135 0.0
MET B:6 B:62 33.0 0.178 -114.0 9.0 33.0 0.178 0.0
4zvo 1 P55210 100.0 1e-146 X-RAY
2016-04-20 MET A:62 A:62 95.0 0.514 -99.5 11.0 25.0 0.135 0.379 B:P55210:0.378
HOH
4.517
O
O
MET C:62 C:362 96.0 0.519 -100.1 11.2 25.0 0.135 0.384 D:P55210:0.384
HOH
6.784
O
O
4zvp 1 P55210 100.0 1e-146 X-RAY
2016-04-20 MET A:62 A:62 90.0 0.486 -107.6 13.7 23.0 0.124 0.362 B:P55210:0.362
HOH
3.182
CE
O
MET C:62 C:362 99.0 0.535 -107.4 15.6 28.0 0.151 0.384 D:P55210:0.384
HOH
3.200
CE
O
4zvq 1 P55210 100.0 1e-146 X-RAY
2016-04-20 MET A:62 A:62 93.0 0.503 -108.7 12.9 25.0 0.135 0.368 B:P55210:0.368
HOH
2.661
N
O
MET C:62 C:362 98.0 0.53 -108.0 12.0 27.0 0.146 0.384 D:P55210:0.384
HOH
2.601
N
O
4zvr 1 P55210 100.0 1e-146 X-RAY
2016-04-20 MET A:62 A:62 93.0 0.503 -110.1 11.3 24.0 0.13 0.373 B:P55210:0.373
HOH
2.973
N
O
MET C:62 C:362 94.0 0.508 -107.7 12.7 24.0 0.13 0.378 D:P55210:0.378
HOH
2.733
N
O
4zvs 1 P55210 100.0 1e-146 X-RAY
2016-04-20 MET A:62 A:62 96.0 0.519 -108.8 9.4 27.0 0.146 0.373 B:P55210:0.373
HOH
2.947
N
O
MET C:62 C:362 97.0 0.524 -107.9 9.6 36.0 0.195 0.329 D:P55210:0.33
HOH
2.520
N
O
4zvt 1 P55210 100.0 1e-146 X-RAY
2016-04-20 MET A:62 A:62 95.0 0.514 -99.9 9.3 26.0 0.141 0.373 B:P55210:0.373
MET C:62 C:362 98.0 0.53 -99.7 7.0 34.0 0.184 0.346 D:P55210:0.346
HOH
3.183
O
O
4zvu 1 P55210 100.0 1e-146 X-RAY
2016-04-20 MET A:62 A:62 93.0 0.503 -100.1 6.0 27.0 0.146 0.357 B:P55210:0.357
HOH
3.050
N
O
MET C:62 C:362 98.0 0.53 -99.3 7.4 39.0 0.211 0.319 D:P55210:0.319
HOH
6.766
O
O
5ic6 1 P55210 100.0 1e-146 X-RAY
2016-07-20 MET A:62 A:62 98.0 0.53 -109.7 -2.3 56.0 0.303 0.227 B:P55210:0.227
MET C:62 C:62 103.0 0.557 -109.0 -1.3 NA NA NA
5k20 1 P55210 100.0 1e-146 X-RAY
2017-01-11 MET A:62 A:62 100.0 0.541 -106.9 9.3 26.0 0.141 0.4 B:P55210:0.4
HOH
3.012
N
O
MET C:62 C:362 98.0 0.53 -106.2 5.8 40.0 0.216 0.314 D:P55210:0.314
FMT
HOH
3.178
3.345
O
CG
O2
O
6cl1 1 P55210 100.0 1e-146 X-RAY
2019-03-06 MET A:62 A:62 96.0 0.519 -110.0 10.1 40.0 0.216 0.303 B:P55210:0.303
HOH
2.891
N
O
MET C:62 C:62 98.0 0.53 -108.3 14.4 41.0 0.222 0.308 D:P55210:0.308
HOH
8.431
O
O
6cl2 1 P55210 100.0 1e-146 X-RAY
2019-03-06 MET A:62 A:62 97.0 0.524 -112.9 6.9 40.0 0.216 0.308 B:P55210:0.308
MET C:62 C:62 98.0 0.53 -104.8 14.0 38.0 0.205 0.325 D:P55210:0.324
HOH
2.638
N
O
6x8j 1 P55210 100.0 1e-146 X-RAY
2021-06-02 MET A:62 A:62 98.0 0.53 -111.4 12.1 39.0 0.211 0.319 B:P55210:0.319
HOH
3.276
CE
O
MET C:62 B:62 96.0 0.519 -111.4 12.2 42.0 0.227 0.292 D:P55210:0.292
HOH
5.595
CE
O
6x8l 1 P55210 100.0 1e-146 X-RAY
2021-06-02 MET A:62 A:62 98.0 0.53 -106.0 17.5 37.0 0.2 0.33 B:P55210:0.33
HOH
3.319
CE
O
MET C:62 B:62 96.0 0.519 -106.7 14.2 38.0 0.205 0.314 D:P55210:0.314
HOH
3.358
CE
O
4jb8 1 P55210 100.0 1e-128 X-RAY
2013-08-21 MET A:39 A:62 97.0 0.524 -117.6 6.3 33.0 0.178 0.346 B:P55210:0.346
HOH
3.075
N
O
4lsz 1 P55210 100.0 1e-128 X-RAY
2014-07-02 MET A:39 A:62 85.0 0.459 -103.4 2.0 12.0 0.065 0.394 B:P55210:0.395
HOH
4.069
CG
O
MET C:39 C:62 93.0 0.503 -104.8 3.7 14.0 0.076 0.427 D:P55210:0.427
HOH
3.846
CE
O
2ql5 1 P55210 100.0 4e-127 X-RAY
2007-08-28 MET A:39 A:62 94.0 0.508 -99.8 6.4 25.0 0.135 0.373 B:P55210:0.373
HOH
3.500
CG
O
MET C:39 C:362 97.0 0.524 -107.0 14.0 27.0 0.146 0.378 D:P55210:0.378
HOH
3.060
O
O
2ql7 1 P55210 100.0 4e-127 X-RAY
2007-08-28 MET A:39 A:62 96.0 0.519 -107.7 10.9 24.0 0.13 0.389 B:P55210:0.389
HOH
3.012
N
O
MET C:39 C:362 97.0 0.524 -105.5 12.5 26.0 0.141 0.383 D:P55210:0.384
HOH
3.027
O
O
2ql9 1 P55210 100.0 4e-127 X-RAY
2007-08-28 MET A:39 A:62 100.0 0.541 -105.1 10.7 20.0 0.108 0.433 B:P55210:0.432
HOH
2.750
N
O
MET C:39 C:362 100.0 0.541 -108.3 12.9 20.0 0.108 0.433 D:P55210:0.432
HOH
2.900
O
O
2qlb 1 P55210 100.0 4e-127 X-RAY
2007-08-28 MET A:39 A:62 94.0 0.508 -107.9 6.9 22.0 0.119 0.389 B:P55210:0.389
HOH
3.056
N
O
MET C:39 C:362 92.0 0.497 -106.0 2.4 28.0 0.151 0.346 D:P55210:0.346
HOH
2.779
N
O
2qlf 1 P55210 100.0 4e-127 X-RAY
2007-08-28 MET A:39 A:62 89.0 0.481 -101.8 6.2 22.0 0.119 0.362 B:P55210:0.362
HOH
4.161
O
O
MET C:39 C:362 97.0 0.524 -101.4 19.5 28.0 0.151 0.373 D:P55210:0.373
HOH
3.042
CG
O
2qlj 1 P55210 100.0 4e-127 X-RAY
2007-08-28 MET A:39 A:62 96.0 0.519 -108.7 5.9 25.0 0.135 0.384 B:P55210:0.384
HOH
4.095
O
O
MET C:39 C:362 96.0 0.519 -101.5 9.1 27.0 0.146 0.373 D:P55210:0.373
HOH
2.725
N
O
3edr 1 P55210 100.0 4e-127 X-RAY
2008-10-28 MET A:39 A:62 91.0 0.492 -104.8 7.5 24.0 0.13 0.362 B:P55210:0.362
HOH
3.532
O
O
MET C:39 C:362 95.0 0.514 -97.3 4.4 25.0 0.135 0.379 D:P55210:0.378
HOH
2.700
N
O
3ibc 1 P55210 100.0 4e-127 X-RAY
2009-09-01 MET A:39 A:62 98.0 0.53 -103.2 18.5 21.0 0.114 0.416 B:P55210:0.416
HOH
3.486
O
O
MET C:39 C:362 101.0 0.546 -102.2 3.3 29.0 0.157 0.389 D:P55210:0.389
HOH
3.436
CG
O
3ibf 1 P55210 100.0 4e-127 X-RAY
2009-09-01 MET A:39 A:62 103.0 0.557 -102.1 8.6 23.0 0.124 0.433 B:P55210:0.432
HOH
3.540
O
O
MET C:39 C:362 104.0 0.562 -106.3 23.3 23.0 0.124 0.438 D:P55210:0.438
HOH
2.741
N
O
1i51 1 P55210 99.32 6e-107 X-RAY
2002-02-23 MET A:12 A:62 103.0 0.557 -105.4 16.4 16.0 0.086 0.471 B:P55210:0.47
MET C:12 C:62 104.0 0.562 -108.5 21.6 21.0 0.114 0.448 D:P55210:0.449

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55210-f1 1 P55210 100.0 0.0 MET A:62 A:62 20.0 0.108 -107.5 -0.7