Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 2417177 . A C CCDS7734.1:NM_004356.3:c.538Aac>Cac_NP_004347.1:p.180N>H Homo sapiens CD81 molecule (CD81), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7jic 2 P60033 99.15 6e-172 EM
2021-01-20 ASN B:191 B:180 80.0 0.5 S -158.0 -142.9 18.0 0.113 0.387 A:P15391:0.388
5tcx 1 P60033 98.3 7e-170 X-RAY
2016-11-09 ASN A:180 A:180 85.0 0.531 -75.3 -174.9 85.0 0.531 0.0
6ejg 1 P60033 98.91 1e-61 X-RAY
2018-05-30 ASN A:71 A:180 63.0 0.394 -79.0 114.3 52.0 0.325 0.069 C:None:0.069
HOH
4.903
ND2
O
ASN B:71 B:180 72.0 0.45 62.4 7.3 62.0 0.388 0.062 D:None:0.062
HOH
4.513
ND2
O
6ejm 1 P60033 98.91 1e-61 X-RAY
2018-05-30 ASN A:71 A:180 72.0 0.45 -51.2 115.2 34.0 0.212 0.238 D:None:0.237
HOH
3.129
OD1
O
ASN B:71 B:180 52.0 0.325 -84.9 98.1 25.0 0.156 0.169 C:None:0.169
HOH
3.491
CA
O
5dfv 1 P60033 97.83 7e-61 X-RAY
2015-12-16 ASN A:71 A:180 62.0 0.388 360.0 148.5 62.0 0.388 0.0
ASN B:71 NA:NA DO NA DO DO DO NA NA NA
5dfw 1 P60033 97.83 9e-61 X-RAY
2015-12-16 ASN A:71 A:180 89.0 0.556 -73.8 177.8 89.0 0.556 0.0 HOH
2.698
ND2
O
6ek2 1 P60033 97.83 9e-61 X-RAY
2018-05-30 ASN A:71 A:180 8.0 0.05 -116.1 -12.6 8.0 0.05 0.0 HOH
6.408
OD1
O
ASN B:71 B:180 13.0 0.081 -113.4 -17.2 13.0 0.081 0.0 HOH
5.488
N
O
5m2c 1 P60033 100.0 2e-60 X-RAY
2016-12-14 ASN A:71 A:180 97.0 0.606 -102.7 172.9 97.0 0.606 0.0 HOH
6.573
N
O
ASN B:71 B:180 98.0 0.613 -104.8 171.5 98.0 0.613 0.0 HOH
4.577
H
O
5m33 1 P60033 100.0 2e-60 X-RAY
2016-12-14 ASN A:71 A:180 69.0 0.431 -156.4 172.8 69.0 0.431 0.0 EDO
HOH
6.008
2.355
HD21
HD22
HO1
O
ASN B:71 B:180 95.0 0.594 H -65.1 -43.2 95.0 0.594 0.0 HOH
4.002
O
O
5m3d 1 P60033 100.0 2e-60 X-RAY
2016-12-14 ASN A:71 A:180 85.0 0.531 -124.8 150.3 85.0 0.531 0.0 EDO
5.101
HA
H21
ASN B:71 B:180 94.0 0.588 -119.8 159.9 NA NA NA
ASN C:71 C:180 96.0 0.6 -62.8 165.3 NA NA NA
ASN D:71 D:180 101.0 0.631 -94.0 -170.0 101.0 0.631 0.0 EDO
HOH
4.059
3.073
HA
HD21
H22
O
5m3t 1 P60033 100.0 2e-60 X-RAY
2016-12-14 ASN A:71 A:180 98.0 0.613 60.9 84.1 98.0 0.613 0.0 EDO
EDO
HOH
9.692
6.520
8.145
HD22
HD22
O
HO2
H21
O
ASN B:71 B:180 89.0 0.556 -73.9 171.8 89.0 0.556 0.0 EDO
HOH
4.485
8.602
N
O
HO1
O
5m4r 1 P60033 100.0 2e-60 X-RAY
2016-12-14 ASN A:71 A:180 123.0 0.769 -72.8 134.0 123.0 0.769 0.0
ASN B:71 B:180 101.0 0.631 -129.6 -21.7 NA NA NA
ASN C:71 C:180 84.0 0.525 -141.6 104.1 NA NA NA
ASN D:71 D:180 110.0 0.688 -79.3 167.7 110.0 0.688 0.0
ASN E:71 E:180 104.0 0.65 -58.2 149.5 NA NA NA
3x0e 1 P60033 100.0 3e-60 X-RAY
2015-07-01 ASN A:71 A:180 74.0 0.463 -152.7 173.3 74.0 0.463 0.0 HOH
2.871
H
O
ASN B:71 B:180 148.0 0.925 360.0 -173.8 148.0 0.925 0.0 HOH
5.386
O
O
6u9s 3 P60033 96.74 4e-60 X-RAY
2020-05-13 ASN C:71 C:180 159.0 0.994 S -72.2 -39.1 6.0 0.037 0.957 A:None:0.956
HOH
3.190
N
O
ASN F:71 F:180 159.0 0.994 S -72.5 -39.5 NA NA NA
1g8q 1 P60033 100.0 2e-59 X-RAY
2001-02-21 ASN A:68 A:180 71.0 0.444 -163.7 164.5 71.0 0.444 0.0 HOH
3.186
ND2
O
ASN B:68 B:280 86.0 0.537 H -75.9 -32.8 86.0 0.537 0.0 HOH
2.860
ND2
O
1iv5 1 P60033 100.0 2e-59 X-RAY
2003-01-28 ASN A:68 A:180 67.0 0.419 -125.8 -148.7 67.0 0.419 0.0 HOH
2.351
OD1
O
ASN B:68 B:280 94.0 0.588 S 177.4 -77.9 94.0 0.588 0.0
7mws 1 Q9N0J9 92.55 4e-59 X-RAY
2021-09-15 SER A:75 A:180 62.0 0.539 -88.4 166.6 62.0 0.539 0.0 HOH
2.881
N
O
SER B:75 B:180 53.0 0.461 S -88.1 135.2 NA NA NA
7mwx 4 Q9N0J9 93.41 3e-57 X-RAY
2021-09-15 SER E:71 D:77 89.0 0.774 -93.2 16.2 69.0 0.6 0.174 A:A0A2I6PIY1:0.174
SER H:71 H:77 80.0 0.696 S -94.7 165.8 NA NA NA
3x0g 1 ? 94.44 1e-56 X-RAY
2015-07-01 ASN A:71 A:180 69.0 0.431 -139.1 172.8 69.0 0.431 0.0 HOH
2.685
HB2
O
3x0f 1 P35762 81.11 4e-45 X-RAY
2015-07-01 ASN A:71 A:180 78.0 0.487 -151.8 -171.2 78.0 0.487 0.0 HOH
1.491
HD21
O
ASN B:71 B:180 146.0 0.912 S -70.4 -26.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p60033-f1 1 P60033 100.0 8e-175 ASN A:180 A:180 94.0 0.588 -102.4 167.3