Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61069732 | . | G | A | CCDS31576.1:NM_001923.4:c.3212tCc>tTc_NP_001914.3:p.1071S>F | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | SER | A:1071 | A:1071 | 74.0 | 0.643 | H | -62.8 | -41.9 | 74.0 | 0.643 | 0.0 |
HOH |
2.776 |
O |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | SER | B:1071 | Y:1071 | 49.0 | 0.426 | H | -71.8 | -19.3 | 49.0 | 0.426 | 0.0 | ||||||
| SER | D:1071 | B:1071 | 51.0 | 0.443 | H | -70.9 | -20.4 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | SER | A:1071 | A:1071 | 64.0 | 0.557 | H | -59.6 | -37.5 | 64.0 | 0.557 | 0.0 | ||||||
| SER | B:1071 | B:1071 | 63.0 | 0.548 | H | -59.5 | -38.5 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | SER | A:1071 | A:1071 | 75.0 | 0.652 | H | -67.3 | -43.1 | 75.0 | 0.652 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | SER | A:1071 | A:1071 | 89.0 | 0.774 | H | -49.5 | -47.8 | 89.0 | 0.774 | 0.0 | ||||||
| SER | B:1071 | B:1071 | 86.0 | 0.748 | H | -48.0 | -43.2 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | SER | A:1071 | A:1071 | 70.0 | 0.609 | H | -63.7 | -33.1 | 70.0 | 0.609 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | SER | B:1071 | B:1071 | 82.0 | 0.713 | H | -76.6 | -7.3 | 82.0 | 0.713 | 0.0 | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | SER | A:1071 | A:1071 | 79.0 | 0.687 | H | -62.3 | -40.0 | 79.0 | 0.687 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | SER | B:1071 | Y:1071 | 74.0 | 0.643 | H | -60.8 | -31.6 | 74.0 | 0.643 | 0.0 | ||||||
| SER | E:1071 | B:1071 | 71.0 | 0.617 | H | -60.3 | -31.9 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | SER | A:1071 | A:1071 | 71.0 | 0.617 | H | -61.6 | -35.8 | 71.0 | 0.617 | 0.0 | ||||||
| SER | D:1071 | D:1071 | 75.0 | 0.652 | H | -61.7 | -35.6 | NA | NA | NA | |||||||||||||
| SER | G:1071 | G:1071 | 68.0 | 0.591 | H | -60.3 | -37.5 | NA | NA | NA | |||||||||||||
| SER | J:1071 | J:1071 | 68.0 | 0.591 | H | -60.2 | -37.4 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | SER | Z:1071 | d:1071 | 71.0 | 0.617 | H | -63.9 | -39.4 | 71.0 | 0.617 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | SER | A:1073 | A:1071 | 73.0 | 0.635 | H | -57.9 | -47.9 | 73.0 | 0.635 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | SER | A:1073 | A:1071 | 75.0 | 0.652 | H | -71.7 | -29.4 | 75.0 | 0.652 | 0.0 |
HOH |
3.570 |
CB |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | SER | T:1074 | d:1071 | 74.0 | 0.643 | H | -61.4 | -40.5 | 74.0 | 0.643 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | SER | N:1074 | d:1071 | 65.0 | 0.565 | H | -61.1 | -39.2 | 65.0 | 0.565 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | SER | Z:1074 | d:1071 | 64.0 | 0.557 | H | -58.4 | -39.1 | 64.0 | 0.557 | 0.0 | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | SER | Z:1074 | d:1071 | 64.0 | 0.557 | H | -58.4 | -39.0 | 64.0 | 0.557 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | SER | A:1075 | A:1071 | 68.0 | 0.591 | H | -63.6 | -32.9 | 68.0 | 0.591 | 0.0 | ||||||
| SER | C:1075 | C:1071 | 68.0 | 0.591 | H | -63.7 | -32.9 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:1075 | K:1071 | 66.0 | 0.574 | H | -60.7 | -43.1 | 66.0 | 0.574 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:1094 | K:1071 | 75.0 | 0.652 | H | -62.0 | -38.9 | 75.0 | 0.652 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:1094 | K:1071 | 62.0 | 0.539 | H | -60.8 | -38.7 | 62.0 | 0.539 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:1094 | K:1071 | 70.0 | 0.609 | H | -60.5 | -37.3 | 70.0 | 0.609 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | L:1094 | K:1071 | 73.0 | 0.635 | H | -60.9 | -37.7 | 73.0 | 0.635 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | SER | C:1090 | C:1071 | 69.0 | 0.6 | H | -63.6 | -32.9 | 69.0 | 0.6 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | SER | A:1090 | A:1071 | 71.0 | 0.617 | H | -65.6 | -29.1 | 71.0 | 0.617 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | SER | A:1090 | A:1071 | 68.0 | NA | H | -59.4 | -38.3 | 37.0 | NA | NA |
K:Q13619:NA |
|||||
| SER | E:1090 | E:1071 | 76.0 | NA | H | -69.7 | -15.7 | NA | NA | NA | |||||||||||||
| SER | I:1090 | I:1071 | 76.0 | NA | H | -69.8 | -15.5 | NA | NA | NA | |||||||||||||
| SER | M:1090 | M:1071 | 79.0 | NA | H | -69.7 | -15.6 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | SER | A:1089 | A:1071 | 73.0 | 0.635 | H | -52.4 | -46.7 | 73.0 | 0.635 | 0.0 |
HOH |
5.851 |
O |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | SER | A:1089 | A:1071 | 69.0 | 0.6 | H | -63.6 | -32.8 | 69.0 | 0.6 | 0.0 |
HOH |
2.721 |
O |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | SER | A:1089 | A:1071 | 70.0 | 0.609 | H | -65.8 | -32.5 | 70.0 | 0.609 | 0.0 |
HOH |
2.727 |
OG |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | SER | A:1089 | A:1071 | 69.0 | 0.6 | H | -55.5 | -40.2 | 69.0 | 0.6 | 0.0 |
HOH |
2.937 |
O |
O |
||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | SER | A:1089 | A:1071 | 66.0 | 0.574 | H | -55.0 | -34.1 | 66.0 | 0.574 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | SER | A:1089 | A:1071 | 67.0 | 0.583 | H | -54.2 | -40.6 | 67.0 | 0.583 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | SER | A:1089 | A:1071 | 56.0 | 0.487 | H | -71.5 | 2.4 | 56.0 | 0.487 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | SER | A:1070 | A:1071 | 81.0 | 0.704 | H | -55.1 | -38.9 | 81.0 | 0.704 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 72.0 | 0.626 | H | -82.5 | -41.1 | 72.0 | 0.626 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 73.0 | 0.635 | H | -61.2 | -44.9 | 73.0 | 0.635 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 68.0 | 0.591 | H | -65.2 | -34.5 | 68.0 | 0.591 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 57.0 | 0.496 | H | -71.5 | -22.2 | 57.0 | 0.496 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 54.0 | 0.47 | H | -76.6 | -27.8 | 54.0 | 0.47 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 55.0 | 0.478 | H | -76.5 | -24.2 | 55.0 | 0.478 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 58.0 | 0.504 | H | -75.7 | -23.5 | 58.0 | 0.504 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 62.0 | 0.539 | H | -71.3 | -24.2 | 62.0 | 0.539 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:1074 | A:1071 | 58.0 | 0.504 | H | -67.5 | -31.0 | 58.0 | 0.504 | 0.0 | ||||||
| SER | B:1074 | B:1071 | 68.0 | 0.591 | H | -61.5 | -31.7 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | SER | A:1071 | A:1071 | 72.0 | 0.626 | H | -65.7 | -26.5 | 72.0 | 0.626 | 0.0 | ||||||
| SER | B:1071 | B:1071 | 76.0 | 0.661 | H | -51.6 | -32.8 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | SER | A:1071 | A:1071 | 86.0 | 0.748 | H | -68.8 | -41.1 | 86.0 | 0.748 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | SER | A:1071 | A:1071 | 72.0 | 0.626 | H | -67.3 | -36.0 | 72.0 | 0.626 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:1090 | A:1071 | 75.0 | 0.652 | H | -44.3 | -46.3 | 75.0 | 0.652 | 0.0 | ||||||
| SER | C:1090 | C:1071 | 91.0 | 0.791 | H | -42.3 | -50.4 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:1090 | A:1071 | 60.0 | 0.522 | H | -59.1 | -45.6 | 60.0 | 0.522 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:1090 | A:1071 | 69.0 | 0.6 | H | -59.8 | -38.4 | 69.0 | 0.6 | 0.0 |
HOH |
5.296 |
N |
O |
||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:1090 | A:1071 | 65.0 | 0.565 | H | -68.3 | -34.7 | 65.0 | 0.565 | 0.0 |
HOH |
8.508 |
N |
O |
||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | SER | A:1081 | A:1071 | 74.0 | 0.643 | H | -63.4 | 155.7 | 74.0 | 0.643 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | SER | A:1081 | A:1071 | 76.0 | 0.661 | H | -69.0 | -43.9 | 76.0 | 0.661 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | SER | A:1089 | A:1071 | 56.0 | 0.487 | H | -45.5 | -41.2 | 56.0 | 0.487 | 0.0 | ||||||
| SER | C:1089 | C:1071 | 53.0 | 0.461 | H | -44.7 | -41.9 | NA | NA | NA | |||||||||||||
| SER | E:1089 | E:1071 | 54.0 | 0.47 | H | -44.4 | -42.2 | NA | NA | NA | |||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | SER | B:767 | B:1071 | 67.0 | 0.583 | H | -54.6 | -38.4 | 67.0 | 0.583 | 0.0 |
HOH |
3.356 |
N |
O |
||
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | SER | B:767 | B:1071 | 76.0 | 0.661 | H | -57.4 | -41.1 | 76.0 | 0.661 | 0.0 |
HOH |
3.731 |
N |
O |
||
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | SER | A:771 | A:1071 | 62.0 | 0.539 | H | -54.0 | -41.5 | 62.0 | 0.539 | 0.0 | ||||||
| SER | D:771 | D:1071 | 65.0 | 0.565 | H | -53.0 | -41.3 | NA | NA | NA | |||||||||||||
| SER | G:771 | G:1071 | 62.0 | 0.539 | H | -55.8 | -41.2 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | SER | A:787 | A:1071 | 69.0 | 0.6 | H | -61.5 | -37.3 | 69.0 | 0.6 | 0.0 |
HOH |
6.968 |
C |
O |
||
| SER | D:787 | D:1071 | 70.0 | 0.609 | H | -62.9 | -36.2 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | SER | A:787 | A:1071 | 54.0 | 0.47 | H | -53.4 | -48.3 | 54.0 | 0.47 | 0.0 |
HOH |
7.648 |
HA |
O |
||
| SER | D:787 | D:1071 | 67.0 | 0.583 | H | -53.6 | -48.1 | NA | NA | NA | |||||||||||||
| SER | G:787 | G:1071 | 61.0 | 0.53 | H | -53.6 | -48.1 | NA | NA | NA | |||||||||||||
| SER | J:787 | J:1071 | 67.0 | 0.583 | H | -53.6 | -47.9 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | SER | A:787 | A:1071 | 62.0 | 0.539 | H | -65.3 | -31.0 | 62.0 | 0.539 | 0.0 | ||||||
| SER | D:787 | D:1071 | 68.0 | 0.591 | H | -66.2 | -30.3 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:795 | A:1071 | 75.0 | 0.652 | H | -64.9 | -37.2 | 75.0 | 0.652 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | SER | A:795 | A:1071 | 77.0 | 0.67 | H | -69.4 | -28.2 | 77.0 | 0.67 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:795 | A:1071 | 69.0 | 0.6 | H | -65.4 | -37.1 | 69.0 | 0.6 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:795 | A:1071 | 62.0 | 0.539 | H | -69.7 | -24.8 | 62.0 | 0.539 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:795 | A:1071 | 69.0 | 0.6 | H | -62.9 | -36.2 | 69.0 | 0.6 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | SER | A:795 | A:1071 | 76.0 | 0.661 | H | -56.3 | -42.9 | 76.0 | 0.661 | 0.0 | ||||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | SER | A:795 | A:1071 | 73.0 | 0.635 | H | -57.1 | -39.8 | 73.0 | 0.635 | 0.0 |
HOH |
9.876 |
N |
O |
||
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | SER | A:795 | A:1071 | 75.0 | 0.652 | H | -59.4 | -37.3 | 75.0 | 0.652 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | SER | A:1071 | A:1071 | 81.0 | 0.704 | H | -63.4 | -36.4 | |