Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61069739 . C A CCDS31576.1:NM_001923.4:c.3205Gag>Tag_NP_001914.3:p.1069E>* Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 GLU A:1069 A:1069 130.0 0.684 -79.6 132.9 130.0 0.684 0.0 HOH
3.037
OE1
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 GLU B:1069 Y:1069 109.0 0.574 -69.8 121.6 109.0 0.574 0.0
GLU D:1069 B:1069 106.0 0.558 -70.1 121.0 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 GLU A:1069 A:1069 113.0 0.595 -73.5 127.3 113.0 0.595 0.0
GLU B:1069 B:1069 110.0 0.579 -73.3 127.3 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 GLU A:1069 A:1069 145.0 0.763 -66.9 129.5 145.0 0.763 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 GLU A:1069 A:1069 121.0 0.637 -65.6 125.6 121.0 0.637 0.0
GLU B:1069 B:1069 109.0 0.574 -65.1 124.1 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 GLU A:1069 A:1069 134.0 0.705 -71.1 135.3 134.0 0.705 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 GLU B:1069 B:1069 108.0 0.568 -73.2 134.4 108.0 0.568 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 GLU A:1069 A:1069 139.0 0.732 -61.1 129.7 139.0 0.732 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 GLU B:1069 Y:1069 118.0 0.621 -63.6 128.8 118.0 0.621 0.0
GLU E:1069 B:1069 118.0 0.621 -64.0 128.9 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 GLU A:1069 A:1069 136.0 0.716 -59.8 128.1 136.0 0.716 0.0
GLU D:1069 D:1069 139.0 0.732 -59.7 128.1 NA NA NA
GLU G:1069 G:1069 135.0 0.711 -59.8 127.6 NA NA NA
GLU J:1069 J:1069 134.0 0.705 -59.9 127.5 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 GLU Z:1069 d:1069 109.0 0.574 -80.4 134.7 109.0 0.574 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 GLU A:1071 A:1069 122.0 0.642 -73.9 136.8 122.0 0.642 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 GLU A:1071 A:1069 134.0 0.705 -70.9 129.6 134.0 0.705 0.0 GOL
HOH
8.675
3.093
N
N
O1
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 GLU T:1072 d:1069 124.0 0.653 -80.8 134.8 124.0 0.653 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 GLU N:1072 d:1069 121.0 0.637 -82.6 134.6 121.0 0.637 0.0
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 GLU Z:1072 d:1069 119.0 0.626 -82.4 133.7 119.0 0.626 0.0
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 GLU Z:1072 d:1069 119.0 0.626 -83.2 134.1 119.0 0.626 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 GLU A:1073 A:1069 120.0 0.632 -75.8 127.6 120.0 0.632 0.0
GLU C:1073 C:1069 120.0 0.632 -76.1 127.9 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 GLU K:1073 K:1069 110.0 0.579 -77.5 137.0 110.0 0.579 0.0
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 GLU K:1092 K:1069 107.0 0.563 -75.3 135.6 107.0 0.563 0.0
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 GLU K:1092 K:1069 92.0 0.484 -75.4 134.8 92.0 0.484 0.0
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 GLU K:1092 K:1069 129.0 0.679 -75.4 134.9 129.0 0.679 0.0
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 GLU L:1092 K:1069 108.0 0.568 -75.8 133.8 108.0 0.568 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 GLU C:1088 C:1069 121.0 0.637 -75.8 127.7 121.0 0.637 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 GLU A:1088 A:1069 129.0 0.679 -86.5 129.1 129.0 0.679 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 GLU A:1088 A:1069 67.0 NA -64.9 140.6 36.0 NA NA K:Q13619:NA
GLU E:1088 E:1069 66.0 NA -60.9 142.9 NA NA NA
GLU I:1088 I:1069 66.0 NA -60.9 142.8 NA NA NA
GLU M:1088 M:1069 67.0 NA -60.9 142.8 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 GLU A:1087 A:1069 125.0 0.658 -69.9 127.5 125.0 0.658 0.0 HOH
2.764
N
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 GLU A:1087 A:1069 121.0 0.637 -75.8 127.7 121.0 0.637 0.0 HOH
3.172
OE1
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 GLU A:1087 A:1069 118.0 0.621 -71.0 132.4 118.0 0.621 0.0 HOH
3.284
CG
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 GLU A:1087 A:1069 141.0 0.742 -71.3 126.4 141.0 0.742 0.0 HOH
2.805
N
O
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 GLU A:1087 A:1069 133.0 0.7 -72.6 129.3 133.0 0.7 0.0 HOH
9.548
O
O
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 GLU A:1087 A:1069 139.0 0.732 -72.5 126.6 139.0 0.732 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 GLU A:1087 A:1069 128.0 0.674 -69.7 152.0 128.0 0.674 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 GLU A:1068 A:1069 137.0 0.721 -66.6 119.7 137.0 0.721 0.0 HOH
8.638
N
O
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 127.0 0.668 -76.9 117.1 127.0 0.668 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 131.0 0.689 -64.6 117.4 131.0 0.689 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 134.0 0.705 -84.2 126.6 134.0 0.705 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 110.0 0.579 -76.2 121.1 110.0 0.579 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 105.0 0.553 -65.6 117.2 105.0 0.553 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 116.0 0.611 -75.5 114.4 116.0 0.611 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 129.0 0.679 -72.4 113.1 129.0 0.679 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 127.0 0.668 -66.5 122.4 127.0 0.668 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLU A:1072 A:1069 134.0 0.705 -48.0 124.4 134.0 0.705 0.0
GLU B:1072 B:1069 135.0 0.711 -60.4 127.6 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 GLU A:1069 A:1069 146.0 0.768 -84.8 123.9 146.0 0.768 0.0
GLU B:1069 B:1069 135.0 0.711 -82.2 137.9 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 GLU A:1069 A:1069 129.0 0.679 -64.3 121.7 129.0 0.679 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 GLU A:1069 A:1069 113.0 0.595 -79.0 119.9 113.0 0.595 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLU A:1088 A:1069 134.0 0.705 -50.7 128.9 134.0 0.705 0.0
GLU C:1088 C:1069 70.0 0.368 -73.3 146.2 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLU A:1088 A:1069 118.0 0.621 -65.4 127.4 118.0 0.621 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLU A:1088 A:1069 110.0 0.579 -76.5 125.7 110.0 0.579 0.0 HOH
3.325
OE2
O
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLU A:1088 A:1069 129.0 0.679 -73.3 134.2 129.0 0.679 0.0 HOH
3.625
OE1
O
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 GLU A:1079 A:1069 110.0 0.579 -75.6 128.7 110.0 0.579 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 GLU A:1079 A:1069 113.0 0.595 -75.8 131.1 113.0 0.595 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 GLU A:1087 A:1069 139.0 0.732 -75.2 124.6 139.0 0.732 0.0
GLU C:1087 C:1069 140.0 0.737 -74.2 124.4 NA NA NA
GLU E:1087 E:1069 141.0 0.742 -74.0 124.0 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
2019-12-18 GLU B:765 B:1069 132.0 0.695 -64.9 131.6 132.0 0.695 0.0 HOH
2.722
OE1
O
6ue5 2 Q16531 100.0 0.0 X-RAY
2019-12-18 GLU B:765 B:1069 129.0 0.679 -64.0 130.3 129.0 0.679 0.0 HOH
5.825
N
O
6td3 1 Q16531 100.0 0.0 X-RAY
2020-06-17 GLU A:769 A:1069 112.0 0.589 -67.4 129.1 112.0 0.589 0.0
GLU D:769 D:1069 112.0 0.589 -67.2 129.1 NA NA NA
GLU G:769 G:1069 112.0 0.589 -67.0 128.4 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
2016-02-24 GLU A:785 A:1069 140.0 0.737 -74.8 137.1 140.0 0.737 0.0 HOH
3.064
N
O
GLU D:785 D:1069 139.0 0.732 -75.0 138.0 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
2018-11-07 GLU A:785 A:1069 133.0 0.7 -76.7 131.8 133.0 0.7 0.0 HOH
8.710
C
O
GLU D:785 D:1069 125.0 0.658 -72.1 131.9 NA NA NA
GLU G:785 G:1069 124.0 0.653 -73.2 131.7 NA NA NA
GLU J:785 J:1069 123.0 0.647 -74.1 132.0 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
2018-11-07 GLU A:785 A:1069 126.0 0.663 -62.4 129.9 126.0 0.663 0.0
GLU D:785 D:1069 133.0 0.7 -60.3 128.1 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
2018-05-30 GLU A:793 A:1069 136.0 0.716 -68.8 134.3 136.0 0.716 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
2018-06-06 GLU A:793 A:1069 141.0 0.742 -63.2 134.0 141.0 0.742 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
2018-05-30 GLU A:793 A:1069 147.0 0.774 -67.2 133.9 147.0 0.774 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
2018-05-30 GLU A:793 A:1069 133.0 0.7 -61.3 134.1 133.0 0.7 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
2018-05-30 GLU A:793 A:1069 136.0 0.716 -68.9 128.7 136.0 0.716 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
2019-11-13 GLU A:793 A:1069 124.0 0.653 -70.5 135.2 114.0 0.6 0.053 E:Q9BW61:0.053
6q0v 1 Q16531 100.0 0.0 X-RAY
2019-11-13 GLU A:793 A:1069 128.0 0.674 -66.1 133.9 122.0 0.642 0.032 E:Q9BW61:0.032
HOH
6.761
N
O
6q0w 1 Q16531 100.0 0.0 X-RAY
2019-11-13 GLU A:793 A:1069 125.0 0.658 -73.9 134.6 115.0 0.605 0.053 E:Q9BW61:0.053

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 GLU A:1069 A:1069 129.0 0.679 -66.3 137.2