Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61069739 | . | C | A | CCDS31576.1:NM_001923.4:c.3205Gag>Tag_NP_001914.3:p.1069E>* | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | GLU | A:1069 | A:1069 | 130.0 | 0.684 | -79.6 | 132.9 | 130.0 | 0.684 | 0.0 |
HOH |
3.037 |
OE1 |
O |
|||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | GLU | B:1069 | Y:1069 | 109.0 | 0.574 | -69.8 | 121.6 | 109.0 | 0.574 | 0.0 | |||||||
GLU | D:1069 | B:1069 | 106.0 | 0.558 | -70.1 | 121.0 | NA | NA | NA | ||||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | GLU | A:1069 | A:1069 | 113.0 | 0.595 | -73.5 | 127.3 | 113.0 | 0.595 | 0.0 | |||||||
GLU | B:1069 | B:1069 | 110.0 | 0.579 | -73.3 | 127.3 | NA | NA | NA | ||||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | GLU | A:1069 | A:1069 | 145.0 | 0.763 | -66.9 | 129.5 | 145.0 | 0.763 | 0.0 | |||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | GLU | A:1069 | A:1069 | 121.0 | 0.637 | -65.6 | 125.6 | 121.0 | 0.637 | 0.0 | |||||||
GLU | B:1069 | B:1069 | 109.0 | 0.574 | -65.1 | 124.1 | NA | NA | NA | ||||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | GLU | A:1069 | A:1069 | 134.0 | 0.705 | -71.1 | 135.3 | 134.0 | 0.705 | 0.0 | |||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | GLU | B:1069 | B:1069 | 108.0 | 0.568 | -73.2 | 134.4 | 108.0 | 0.568 | 0.0 | |||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | GLU | A:1069 | A:1069 | 139.0 | 0.732 | -61.1 | 129.7 | 139.0 | 0.732 | 0.0 | |||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | GLU | B:1069 | Y:1069 | 118.0 | 0.621 | -63.6 | 128.8 | 118.0 | 0.621 | 0.0 | |||||||
GLU | E:1069 | B:1069 | 118.0 | 0.621 | -64.0 | 128.9 | NA | NA | NA | ||||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | GLU | A:1069 | A:1069 | 136.0 | 0.716 | -59.8 | 128.1 | 136.0 | 0.716 | 0.0 | |||||||
GLU | D:1069 | D:1069 | 139.0 | 0.732 | -59.7 | 128.1 | NA | NA | NA | ||||||||||||||
GLU | G:1069 | G:1069 | 135.0 | 0.711 | -59.8 | 127.6 | NA | NA | NA | ||||||||||||||
GLU | J:1069 | J:1069 | 134.0 | 0.705 | -59.9 | 127.5 | NA | NA | NA | ||||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLU | Z:1069 | d:1069 | 109.0 | 0.574 | -80.4 | 134.7 | 109.0 | 0.574 | 0.0 | |||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | GLU | A:1071 | A:1069 | 122.0 | 0.642 | -73.9 | 136.8 | 122.0 | 0.642 | 0.0 | |||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | GLU | A:1071 | A:1069 | 134.0 | 0.705 | -70.9 | 129.6 | 134.0 | 0.705 | 0.0 |
GOL HOH |
8.675 3.093 |
N N |
O1 O |
|||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLU | T:1072 | d:1069 | 124.0 | 0.653 | -80.8 | 134.8 | 124.0 | 0.653 | 0.0 | |||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLU | N:1072 | d:1069 | 121.0 | 0.637 | -82.6 | 134.6 | 121.0 | 0.637 | 0.0 | |||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLU | Z:1072 | d:1069 | 119.0 | 0.626 | -82.4 | 133.7 | 119.0 | 0.626 | 0.0 | |||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLU | Z:1072 | d:1069 | 119.0 | 0.626 | -83.2 | 134.1 | 119.0 | 0.626 | 0.0 | |||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLU | A:1073 | A:1069 | 120.0 | 0.632 | -75.8 | 127.6 | 120.0 | 0.632 | 0.0 | |||||||
GLU | C:1073 | C:1069 | 120.0 | 0.632 | -76.1 | 127.9 | NA | NA | NA | ||||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:1073 | K:1069 | 110.0 | 0.579 | -77.5 | 137.0 | 110.0 | 0.579 | 0.0 | |||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:1092 | K:1069 | 107.0 | 0.563 | -75.3 | 135.6 | 107.0 | 0.563 | 0.0 | |||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:1092 | K:1069 | 92.0 | 0.484 | -75.4 | 134.8 | 92.0 | 0.484 | 0.0 | |||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:1092 | K:1069 | 129.0 | 0.679 | -75.4 | 134.9 | 129.0 | 0.679 | 0.0 | |||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | L:1092 | K:1069 | 108.0 | 0.568 | -75.8 | 133.8 | 108.0 | 0.568 | 0.0 | |||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLU | C:1088 | C:1069 | 121.0 | 0.637 | -75.8 | 127.7 | 121.0 | 0.637 | 0.0 | |||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | GLU | A:1088 | A:1069 | 129.0 | 0.679 | -86.5 | 129.1 | 129.0 | 0.679 | 0.0 | |||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLU | A:1088 | A:1069 | 67.0 | NA | -64.9 | 140.6 | 36.0 | NA | NA |
K:Q13619:NA |
||||||
GLU | E:1088 | E:1069 | 66.0 | NA | -60.9 | 142.9 | NA | NA | NA | ||||||||||||||
GLU | I:1088 | I:1069 | 66.0 | NA | -60.9 | 142.8 | NA | NA | NA | ||||||||||||||
GLU | M:1088 | M:1069 | 67.0 | NA | -60.9 | 142.8 | NA | NA | NA | ||||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:1087 | A:1069 | 125.0 | 0.658 | -69.9 | 127.5 | 125.0 | 0.658 | 0.0 |
HOH |
2.764 |
N |
O |
|||
3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:1087 | A:1069 | 121.0 | 0.637 | -75.8 | 127.7 | 121.0 | 0.637 | 0.0 |
HOH |
3.172 |
OE1 |
O |
|||
3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:1087 | A:1069 | 118.0 | 0.621 | -71.0 | 132.4 | 118.0 | 0.621 | 0.0 |
HOH |
3.284 |
CG |
O |
|||
4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLU | A:1087 | A:1069 | 141.0 | 0.742 | -71.3 | 126.4 | 141.0 | 0.742 | 0.0 |
HOH |
2.805 |
N |
O |
|||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLU | A:1087 | A:1069 | 133.0 | 0.7 | -72.6 | 129.3 | 133.0 | 0.7 | 0.0 |
HOH |
9.548 |
O |
O |
|||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLU | A:1087 | A:1069 | 139.0 | 0.732 | -72.5 | 126.6 | 139.0 | 0.732 | 0.0 | |||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | GLU | A:1087 | A:1069 | 128.0 | 0.674 | -69.7 | 152.0 | 128.0 | 0.674 | 0.0 | |||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | GLU | A:1068 | A:1069 | 137.0 | 0.721 | -66.6 | 119.7 | 137.0 | 0.721 | 0.0 |
HOH |
8.638 |
N |
O |
|||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 127.0 | 0.668 | -76.9 | 117.1 | 127.0 | 0.668 | 0.0 | |||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 131.0 | 0.689 | -64.6 | 117.4 | 131.0 | 0.689 | 0.0 | |||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 134.0 | 0.705 | -84.2 | 126.6 | 134.0 | 0.705 | 0.0 | |||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 110.0 | 0.579 | -76.2 | 121.1 | 110.0 | 0.579 | 0.0 | |||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 105.0 | 0.553 | -65.6 | 117.2 | 105.0 | 0.553 | 0.0 | |||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 116.0 | 0.611 | -75.5 | 114.4 | 116.0 | 0.611 | 0.0 | |||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 129.0 | 0.679 | -72.4 | 113.1 | 129.0 | 0.679 | 0.0 | |||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 127.0 | 0.668 | -66.5 | 122.4 | 127.0 | 0.668 | 0.0 | |||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:1072 | A:1069 | 134.0 | 0.705 | -48.0 | 124.4 | 134.0 | 0.705 | 0.0 | |||||||
GLU | B:1072 | B:1069 | 135.0 | 0.711 | -60.4 | 127.6 | NA | NA | NA | ||||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLU | A:1069 | A:1069 | 146.0 | 0.768 | -84.8 | 123.9 | 146.0 | 0.768 | 0.0 | |||||||
GLU | B:1069 | B:1069 | 135.0 | 0.711 | -82.2 | 137.9 | NA | NA | NA | ||||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLU | A:1069 | A:1069 | 129.0 | 0.679 | -64.3 | 121.7 | 129.0 | 0.679 | 0.0 | |||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | GLU | A:1069 | A:1069 | 113.0 | 0.595 | -79.0 | 119.9 | 113.0 | 0.595 | 0.0 | |||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:1088 | A:1069 | 134.0 | 0.705 | -50.7 | 128.9 | 134.0 | 0.705 | 0.0 | |||||||
GLU | C:1088 | C:1069 | 70.0 | 0.368 | -73.3 | 146.2 | NA | NA | NA | ||||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:1088 | A:1069 | 118.0 | 0.621 | -65.4 | 127.4 | 118.0 | 0.621 | 0.0 | |||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:1088 | A:1069 | 110.0 | 0.579 | -76.5 | 125.7 | 110.0 | 0.579 | 0.0 |
HOH |
3.325 |
OE2 |
O |
|||
4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:1088 | A:1069 | 129.0 | 0.679 | -73.3 | 134.2 | 129.0 | 0.679 | 0.0 |
HOH |
3.625 |
OE1 |
O |
|||
4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | GLU | A:1079 | A:1069 | 110.0 | 0.579 | -75.6 | 128.7 | 110.0 | 0.579 | 0.0 | |||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | GLU | A:1079 | A:1069 | 113.0 | 0.595 | -75.8 | 131.1 | 113.0 | 0.595 | 0.0 | |||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:1087 | A:1069 | 139.0 | 0.732 | -75.2 | 124.6 | 139.0 | 0.732 | 0.0 | |||||||
GLU | C:1087 | C:1069 | 140.0 | 0.737 | -74.2 | 124.4 | NA | NA | NA | ||||||||||||||
GLU | E:1087 | E:1069 | 141.0 | 0.742 | -74.0 | 124.0 | NA | NA | NA | ||||||||||||||
6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLU | B:765 | B:1069 | 132.0 | 0.695 | -64.9 | 131.6 | 132.0 | 0.695 | 0.0 |
HOH |
2.722 |
OE1 |
O |
|||
6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLU | B:765 | B:1069 | 129.0 | 0.679 | -64.0 | 130.3 | 129.0 | 0.679 | 0.0 |
HOH |
5.825 |
N |
O |
|||
6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | GLU | A:769 | A:1069 | 112.0 | 0.589 | -67.4 | 129.1 | 112.0 | 0.589 | 0.0 | |||||||
GLU | D:769 | D:1069 | 112.0 | 0.589 | -67.2 | 129.1 | NA | NA | NA | ||||||||||||||
GLU | G:769 | G:1069 | 112.0 | 0.589 | -67.0 | 128.4 | NA | NA | NA | ||||||||||||||
5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | GLU | A:785 | A:1069 | 140.0 | 0.737 | -74.8 | 137.1 | 140.0 | 0.737 | 0.0 |
HOH |
3.064 |
N |
O |
|||
GLU | D:785 | D:1069 | 139.0 | 0.732 | -75.0 | 138.0 | NA | NA | NA | ||||||||||||||
6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLU | A:785 | A:1069 | 133.0 | 0.7 | -76.7 | 131.8 | 133.0 | 0.7 | 0.0 |
HOH |
8.710 |
C |
O |
|||
GLU | D:785 | D:1069 | 125.0 | 0.658 | -72.1 | 131.9 | NA | NA | NA | ||||||||||||||
GLU | G:785 | G:1069 | 124.0 | 0.653 | -73.2 | 131.7 | NA | NA | NA | ||||||||||||||
GLU | J:785 | J:1069 | 123.0 | 0.647 | -74.1 | 132.0 | NA | NA | NA | ||||||||||||||
6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLU | A:785 | A:1069 | 126.0 | 0.663 | -62.4 | 129.9 | 126.0 | 0.663 | 0.0 | |||||||
GLU | D:785 | D:1069 | 133.0 | 0.7 | -60.3 | 128.1 | NA | NA | NA | ||||||||||||||
6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:793 | A:1069 | 136.0 | 0.716 | -68.8 | 134.3 | 136.0 | 0.716 | 0.0 | |||||||
6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | GLU | A:793 | A:1069 | 141.0 | 0.742 | -63.2 | 134.0 | 141.0 | 0.742 | 0.0 | |||||||
6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:793 | A:1069 | 147.0 | 0.774 | -67.2 | 133.9 | 147.0 | 0.774 | 0.0 | |||||||
6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:793 | A:1069 | 133.0 | 0.7 | -61.3 | 134.1 | 133.0 | 0.7 | 0.0 | |||||||
6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:793 | A:1069 | 136.0 | 0.716 | -68.9 | 128.7 | 136.0 | 0.716 | 0.0 | |||||||
6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLU | A:793 | A:1069 | 124.0 | 0.653 | -70.5 | 135.2 | 114.0 | 0.6 | 0.053 |
E:Q9BW61:0.053 |
||||||
6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLU | A:793 | A:1069 | 128.0 | 0.674 | -66.1 | 133.9 | 122.0 | 0.642 | 0.032 |
E:Q9BW61:0.032 |
HOH |
6.761 |
N |
O |
||
6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLU | A:793 | A:1069 | 125.0 | 0.658 | -73.9 | 134.6 | 115.0 | 0.605 | 0.053 |
E:Q9BW61:0.053 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | GLU | A:1069 | A:1069 | 129.0 | 0.679 | -66.3 | 137.2 |