Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61070527 | . | T | A | CCDS31576.1:NM_001923.4:c.2933cAa>cTa_NP_001914.3:p.978Q>L | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | GLN | A:978 | A:978 | 90.0 | 0.5 | -131.8 | 360.0 | 90.0 | 0.5 | 0.0 |
HOH |
5.121 |
O |
O |
|||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | GLN | B:978 | Y:978 | 47.0 | 0.261 | E | -130.9 | 144.8 | 47.0 | 0.261 | 0.0 | ||||||
| GLN | D:978 | B:978 | 47.0 | 0.261 | E | -133.2 | 143.9 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | GLN | A:978 | A:978 | 30.0 | 0.167 | E | -108.8 | 150.8 | 30.0 | 0.167 | 0.0 | ||||||
| GLN | B:978 | B:978 | 32.0 | 0.178 | E | -108.6 | 149.8 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | GLN | A:978 | A:978 | 53.0 | 0.294 | E | -111.6 | 152.5 | 53.0 | 0.294 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | GLN | A:978 | A:978 | 31.0 | 0.172 | E | -163.7 | 136.3 | 31.0 | 0.172 | 0.0 | ||||||
| GLN | B:978 | B:978 | 22.0 | 0.122 | E | -161.2 | 136.2 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | GLN | A:978 | A:978 | 39.0 | 0.217 | E | -132.5 | 142.8 | 39.0 | 0.217 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | GLN | B:978 | B:978 | 45.0 | 0.25 | E | -83.0 | -177.2 | 45.0 | 0.25 | 0.0 | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | GLN | A:978 | A:978 | 56.0 | 0.311 | E | -108.0 | 160.3 | 56.0 | 0.311 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | GLN | B:978 | Y:978 | 54.0 | 0.3 | E | -138.6 | 144.3 | 54.0 | 0.3 | 0.0 | ||||||
| GLN | E:978 | B:978 | 55.0 | 0.306 | E | -138.8 | 145.7 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | GLN | A:978 | A:978 | 40.0 | 0.222 | E | -137.3 | 140.8 | 40.0 | 0.222 | 0.0 | ||||||
| GLN | D:978 | D:978 | 18.0 | 0.1 | E | -138.0 | 148.5 | NA | NA | NA | |||||||||||||
| GLN | G:978 | G:978 | 37.0 | 0.206 | E | -137.3 | 142.1 | NA | NA | NA | |||||||||||||
| GLN | J:978 | J:978 | 38.0 | 0.211 | E | -136.0 | 142.3 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLN | Z:978 | d:978 | 53.0 | 0.294 | E | -145.8 | 128.8 | 53.0 | 0.294 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | GLN | A:980 | A:978 | 33.0 | 0.183 | E | -123.5 | 136.8 | 33.0 | 0.183 | 0.0 |
HOH |
7.755 |
OE1 |
O |
||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | GLN | A:980 | A:978 | 47.0 | 0.261 | E | -121.4 | 136.1 | 47.0 | 0.261 | 0.0 |
HOH |
7.018 |
C |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLN | T:981 | d:978 | 47.0 | 0.261 | E | -143.9 | 129.4 | 47.0 | 0.261 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLN | N:981 | d:978 | 39.0 | 0.217 | E | -144.6 | 123.2 | 39.0 | 0.217 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLN | Z:981 | d:978 | 39.0 | 0.217 | E | -145.1 | 122.8 | 39.0 | 0.217 | 0.0 | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLN | Z:981 | d:978 | 39.0 | 0.217 | E | -145.0 | 122.8 | 39.0 | 0.217 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLN | A:982 | A:978 | 20.0 | 0.111 | E | -129.3 | 153.3 | 20.0 | 0.111 | 0.0 | ||||||
| GLN | C:982 | C:978 | 20.0 | 0.111 | E | -129.0 | 153.3 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:982 | K:978 | 27.0 | 0.15 | E | -138.6 | 161.3 | 27.0 | 0.15 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:1001 | K:978 | 4.0 | 0.022 | E | -133.9 | 160.8 | 4.0 | 0.022 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:1001 | K:978 | 12.0 | 0.067 | E | -136.7 | 159.8 | 12.0 | 0.067 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:1001 | K:978 | 6.0 | 0.033 | E | -136.4 | 155.5 | 6.0 | 0.033 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | L:1001 | K:978 | 11.0 | 0.061 | E | -135.8 | 156.3 | 11.0 | 0.061 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLN | C:997 | C:978 | 21.0 | 0.117 | E | -129.1 | 153.4 | 21.0 | 0.117 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | GLN | A:997 | A:978 | 51.0 | 0.283 | E | -146.8 | 140.6 | 51.0 | 0.283 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLN | A:997 | A:978 | 27.0 | NA | E | -116.7 | 129.8 | 27.0 | NA | NA | ||||||
| GLN | E:997 | E:978 | 27.0 | NA | E | -125.8 | 133.6 | NA | NA | NA | |||||||||||||
| GLN | I:997 | I:978 | 27.0 | NA | E | -125.7 | 133.6 | NA | NA | NA | |||||||||||||
| GLN | M:997 | M:978 | 27.0 | NA | E | -125.8 | 133.6 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:996 | A:978 | 19.0 | 0.106 | E | -125.2 | 150.4 | 19.0 | 0.106 | 0.0 |
HOH |
7.099 |
NE2 |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:996 | A:978 | 21.0 | 0.117 | E | -129.1 | 153.4 | 21.0 | 0.117 | 0.0 |
HOH |
7.248 |
O |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:996 | A:978 | 28.0 | 0.156 | E | -135.1 | 152.5 | 28.0 | 0.156 | 0.0 |
HOH |
4.108 |
CD |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLN | A:996 | A:978 | 69.0 | 0.383 | E | -111.8 | 180.0 | 69.0 | 0.383 | 0.0 | ||||||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLN | A:996 | A:978 | 63.0 | 0.35 | E | -122.4 | 170.6 | 63.0 | 0.35 | 0.0 |
HOH |
7.533 |
NE2 |
O |
||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLN | A:996 | A:978 | 63.0 | 0.35 | E | -121.2 | 178.8 | 63.0 | 0.35 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | GLN | A:996 | A:978 | 56.0 | 0.311 | E | -166.1 | 155.6 | 56.0 | 0.311 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | GLN | A:977 | A:978 | 47.0 | 0.261 | E | -123.4 | 137.1 | 47.0 | 0.261 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 37.0 | 0.206 | E | -139.5 | 147.9 | 37.0 | 0.206 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 28.0 | 0.156 | E | -139.3 | 148.9 | 28.0 | 0.156 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 25.0 | 0.139 | E | -142.1 | 145.7 | 25.0 | 0.139 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 34.0 | 0.189 | E | -137.0 | 159.4 | 34.0 | 0.189 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 35.0 | 0.194 | E | -145.0 | 165.0 | 35.0 | 0.194 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 36.0 | 0.2 | E | -128.8 | 162.6 | 36.0 | 0.2 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 33.0 | 0.183 | -124.0 | -177.9 | 33.0 | 0.183 | 0.0 | |||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 37.0 | 0.206 | E | -139.4 | 153.5 | 37.0 | 0.206 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:981 | A:978 | 41.0 | 0.228 | E | -150.0 | 154.4 | 41.0 | 0.228 | 0.0 | ||||||
| GLN | B:981 | B:978 | 19.0 | 0.106 | E | -131.0 | 152.5 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLN | A:978 | A:978 | 22.0 | 0.122 | E | -131.4 | 150.7 | 22.0 | 0.122 | 0.0 | ||||||
| GLN | B:978 | B:978 | 32.0 | 0.178 | E | -118.1 | 163.4 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLN | A:978 | A:978 | 24.0 | 0.133 | E | -147.1 | 146.3 | 24.0 | 0.133 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | GLN | A:978 | A:978 | 27.0 | 0.15 | E | -142.0 | 139.0 | 27.0 | 0.15 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:997 | A:978 | 82.0 | 0.456 | E | -126.1 | 158.1 | 82.0 | 0.456 | 0.0 | ||||||
| GLN | C:997 | C:978 | 22.0 | 0.122 | E | -133.2 | 141.0 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:997 | A:978 | 24.0 | 0.133 | E | -150.2 | 141.6 | 24.0 | 0.133 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:997 | A:978 | 53.0 | 0.294 | E | -130.2 | 161.2 | 53.0 | 0.294 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:997 | A:978 | 22.0 | 0.122 | E | -125.7 | 158.7 | 22.0 | 0.122 | 0.0 |
HOH |
9.147 |
O |
O |
||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | GLN | A:988 | A:978 | 31.0 | 0.172 | E | -129.9 | 152.3 | 31.0 | 0.172 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | GLN | A:988 | A:978 | 20.0 | 0.111 | E | -134.0 | 141.7 | 20.0 | 0.111 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:996 | A:978 | 36.0 | 0.2 | E | -140.2 | 142.7 | 36.0 | 0.2 | 0.0 | ||||||
| GLN | C:996 | C:978 | 38.0 | 0.211 | E | -140.3 | 141.7 | NA | NA | NA | |||||||||||||
| GLN | E:996 | E:978 | 37.0 | 0.206 | E | -140.6 | 142.3 | NA | NA | NA | |||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLN | B:674 | B:978 | 47.0 | 0.261 | E | -128.1 | 158.2 | 47.0 | 0.261 | 0.0 |
HOH |
6.952 |
NE2 |
O |
||
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLN | B:674 | B:978 | 42.0 | 0.233 | E | -134.2 | 168.3 | 42.0 | 0.233 | 0.0 |
HOH |
2.946 |
OE1 |
O |
||
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | GLN | A:678 | A:978 | 20.0 | 0.111 | E | -127.7 | 152.1 | 20.0 | 0.111 | 0.0 | ||||||
| GLN | D:678 | D:978 | 36.0 | 0.2 | E | -144.0 | 171.2 | NA | NA | NA | |||||||||||||
| GLN | G:678 | G:978 | 30.0 | 0.167 | E | -139.4 | 154.0 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | GLN | A:694 | A:978 | 40.0 | 0.222 | E | -132.7 | 146.6 | 40.0 | 0.222 | 0.0 |
HOH |
7.013 |
NE2 |
O |
||
| GLN | D:694 | D:978 | 38.0 | 0.211 | E | -130.3 | 145.9 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLN | A:694 | A:978 | 18.0 | 0.1 | E | -132.6 | 147.0 | 18.0 | 0.1 | 0.0 | ||||||
| GLN | D:694 | D:978 | 16.0 | 0.089 | E | -132.9 | 147.2 | NA | NA | NA | |||||||||||||
| GLN | G:694 | G:978 | 26.0 | 0.144 | E | -132.9 | 147.2 | NA | NA | NA | |||||||||||||
| GLN | J:694 | J:978 | 13.0 | 0.072 | E | -132.5 | 137.6 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLN | A:694 | A:978 | 23.0 | 0.128 | E | -140.4 | 152.8 | 23.0 | 0.128 | 0.0 | ||||||
| GLN | D:694 | D:978 | 21.0 | 0.117 | E | -144.0 | 149.4 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:702 | A:978 | 33.0 | 0.183 | E | -132.1 | 144.8 | 33.0 | 0.183 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | GLN | A:702 | A:978 | 29.0 | 0.161 | E | -120.0 | 149.0 | 29.0 | 0.161 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:702 | A:978 | 39.0 | 0.217 | E | -131.8 | 154.1 | 39.0 | 0.217 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:702 | A:978 | 47.0 | 0.261 | E | -109.4 | 133.5 | 47.0 | 0.261 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:702 | A:978 | 40.0 | 0.222 | E | -124.3 | 157.0 | 40.0 | 0.222 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLN | A:702 | A:978 | 27.0 | 0.15 | E | -138.4 | 146.4 | 27.0 | 0.15 | 0.0 | ||||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLN | A:702 | A:978 | 29.0 | 0.161 | E | -141.2 | 145.4 | 29.0 | 0.161 | 0.0 | ||||||
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLN | A:702 | A:978 | 29.0 | 0.161 | E | -139.1 | 145.1 | 29.0 | 0.161 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | GLN | A:978 | A:978 | 40.0 | 0.222 | E | -114.4 | 133.0 | |