Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61070548 . G A CCDS31576.1:NM_001923.4:c.2912gCc>gTc_NP_001914.3:p.971A>V Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 ALA A:971 A:971 27.0 0.235 T -105.5 23.0 27.0 0.235 0.0 HOH
 2.633
 O
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 ALA B:971 Y:971 11.0 0.096 T 73.8 44.8 9.0 0.078 0.018 C:Q96SW2:0.017
ALA D:971 B:971 10.0 0.087 T 73.6 45.5 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 ALA A:971 A:971 26.0 0.226 T -95.2 25.2 16.0 0.139 0.087 C:Q9Y4B6:0.087
ALA B:971 B:971 25.0 0.217 T -94.5 24.9 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 ALA A:971 A:971 14.0 0.122 T 61.9 57.3 11.0 0.096 0.026 B:Q96SW2:0.026
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 ALA A:971 A:971 26.0 0.226 T -105.7 7.1 26.0 0.226 0.0
ALA B:971 B:971 17.0 0.148 S -93.5 -160.4 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 ALA A:971 A:971 18.0 0.157 T -110.4 12.1 18.0 0.157 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 ALA B:971 B:971 8.0 0.07 T -90.7 19.4 8.0 0.07 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 ALA A:971 A:971 13.0 0.113 T 68.2 40.6 9.0 0.078 0.035 B:Q96SW2:0.035
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 ALA B:971 Y:971 25.0 0.217 T 59.1 37.2 13.0 0.113 0.104 C:Q96SW2:0.104
ALA E:971 B:971 14.0 0.122 T 57.8 38.4 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 ALA A:971 A:971 18.0 0.157 T 65.4 37.7 16.0 0.139 0.018 B:Q96SW2:0.017
ALA D:971 D:971 17.0 0.148 T 65.5 38.0 NA NA NA
ALA G:971 G:971 19.0 0.165 T 65.3 37.8 NA NA NA
ALA J:971 J:971 20.0 0.174 T 64.2 38.3 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 ALA Z:971 d:971 18.0 0.157 T -94.0 28.8 15.0 0.13 0.027 W:Q13216:0.026
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 ALA A:973 A:971 21.0 0.183 T -86.2 13.2 21.0 0.183 0.0 HOH
 9.721
 C
 O
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 ALA A:973 A:971 21.0 0.183 T -108.1 17.9 21.0 0.183 0.0 HOH
 2.545
 O
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 ALA T:974 d:971 15.0 0.13 T -93.9 28.0 11.0 0.096 0.034 P:Q13216:0.035
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 ALA N:974 d:971 21.0 0.183 T -93.8 25.4 16.0 0.139 0.044 R:Q13216:0.043
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 ALA Z:974 d:971 22.0 0.191 T -94.9 24.6 16.0 0.139 0.052 W:Q13216:0.052
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 ALA Z:974 d:971 22.0 0.191 T -94.9 24.6 15.0 0.13 0.061 W:Q13216:0.061
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 ALA A:975 A:971 24.0 0.209 T -101.5 30.0 24.0 0.209 0.0
ALA C:975 C:971 25.0 0.217 T -101.8 30.2 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 ALA K:975 K:971 17.0 0.148 T -87.4 21.5 17.0 0.148 0.0
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 ALA K:994 K:971 30.0 0.261 T -88.1 19.6 30.0 0.261 0.0
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 ALA K:994 K:971 21.0 0.183 T -85.8 22.1 21.0 0.183 0.0
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 ALA K:994 K:971 25.0 0.217 T -90.7 17.0 25.0 0.217 0.0
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 ALA L:994 K:971 25.0 0.217 T -90.6 16.8 21.0 0.183 0.034 C:Q92466:0.035
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 ALA C:990 C:971 24.0 0.209 T -101.9 30.1 24.0 0.209 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 ALA A:990 A:971 27.0 0.235 T -93.5 15.7 18.0 0.157 0.078 B:Q13216:0.078
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 ALA A:990 A:971 63.0 0.548 T -90.2 22.0 63.0 0.548 0.0
ALA E:990 E:971 53.0 0.461 T -92.4 11.0 NA NA NA
ALA I:990 I:971 53.0 0.461 T -92.5 11.0 NA NA NA
ALA M:990 M:971 51.0 0.443 T -92.4 10.9 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ALA A:989 A:971 25.0 0.217 T -109.8 32.4 25.0 0.217 0.0 HOH
 5.216
 N
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ALA A:989 A:971 25.0 0.217 T -101.7 30.2 25.0 0.217 0.0 HOH
 4.427
 N
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ALA A:989 A:971 27.0 0.235 T -91.7 19.0 27.0 0.235 0.0 HOH
 2.532
 O
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ALA A:989 A:971 12.0 0.104 T 77.7 50.0 7.0 0.061 0.043 B:P0CF65:0.043
 HOH
 3.196
 N
 O
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ALA A:989 A:971 13.0 0.113 T 75.6 49.3 10.0 0.087 0.026 B:P0CF65:0.026
 HOH
 8.042
 O
 O
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ALA A:989 A:971 11.0 0.096 T 80.2 49.6 7.0 0.061 0.035 B:P0CF65:0.035
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 ALA A:989 A:971 23.0 0.2 T -80.9 37.3 13.0 0.113 0.087 B:Q13216:0.087
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 ALA A:970 A:971 13.0 0.113 T 72.7 45.9 10.0 0.087 0.026 B:Q96SW2:0.026
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 23.0 0.2 T -98.1 11.6 23.0 0.2 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 22.0 0.191 T -108.0 24.9 22.0 0.191 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 28.0 0.243 T -124.4 27.2 28.0 0.243 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 21.0 0.183 T -125.4 32.3 21.0 0.183 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 23.0 0.2 S -101.9 -0.5 23.0 0.2 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 19.0 0.165 T -135.1 25.7 19.0 0.165 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 25.0 0.217 T -114.6 31.3 25.0 0.217 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 25.0 0.217 T -103.9 20.1 25.0 0.217 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ALA A:974 A:971 29.0 0.252 T -90.4 25.7 29.0 0.252 0.0
ALA B:974 B:971 30.0 0.261 T -102.6 8.3 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ALA A:971 A:971 22.0 0.191 T -119.1 20.3 22.0 0.191 0.0
ALA B:971 B:971 19.0 0.165 T -97.7 6.6 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ALA A:971 A:971 22.0 0.191 T -111.6 15.0 22.0 0.191 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 ALA A:971 A:971 17.0 0.148 T -72.0 -17.5 17.0 0.148 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ALA A:990 A:971 30.0 0.261 T -115.7 31.5 30.0 0.261 0.0
ALA C:990 C:971 24.0 0.209 T -97.5 36.5 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ALA A:990 A:971 32.0 0.278 T -89.5 30.8 32.0 0.278 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ALA A:990 A:971 30.0 0.261 T -91.1 25.9 30.0 0.261 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ALA A:990 A:971 28.0 0.243 T -84.9 22.1 28.0 0.243 0.0 HOH
 9.278
 N
 O
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 ALA A:981 A:971 16.0 0.139 T -100.9 27.3 16.0 0.139 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 ALA A:981 A:971 9.0 0.078 T -103.3 25.0 9.0 0.078 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 ALA A:989 A:971 13.0 0.113 T -89.0 8.4 13.0 0.113 0.0
ALA C:989 C:971 14.0 0.122 T -90.9 6.1 NA NA NA
ALA E:989 E:971 13.0 0.113 T -89.3 6.8 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ALA B:667 B:971 22.0 0.191 T -97.0 28.3 22.0 0.191 0.0 HOH
 4.171
 CB
 O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ALA B:667 B:971 23.0 0.2 T -92.1 24.0 23.0 0.2 0.0 HOH
 4.902
 N
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 ALA A:671 A:971 25.0 0.217 T -94.9 23.7 25.0 0.217 0.0
ALA D:671 D:971 26.0 0.226 T -95.8 23.9 NA NA NA
ALA G:671 G:971 27.0 0.235 T -96.2 23.9 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 ALA A:687 A:971 14.0 0.122 T 77.9 50.4 12.0 0.104 0.018 B:Q96SW2:0.017
 HOH
 3.156
 N
 O
ALA D:687 D:971 12.0 0.104 T 79.7 43.5 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 ALA A:687 A:971 11.0 0.096 T 66.1 48.8 9.0 0.078 0.018 B:Q96SW2:0.017
ALA D:687 D:971 17.0 0.148 T 66.2 48.9 NA NA NA
ALA G:687 G:971 18.0 0.157 T 66.0 48.8 NA NA NA
ALA J:687 J:971 12.0 0.104 T 66.4 49.2 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 ALA A:687 A:971 14.0 0.122 T -76.5 42.6 14.0 0.122 0.0
ALA D:687 D:971 14.0 0.122 T -76.6 42.2 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ALA A:695 A:971 19.0 0.165 T 68.2 37.7 16.0 0.139 0.026 B:Q96SW2:0.026
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 ALA A:695 A:971 20.0 0.174 T 62.4 31.9 17.0 0.148 0.026 B:Q96SW2:0.026
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ALA A:695 A:971 19.0 0.165 T 61.1 33.3 17.0 0.148 0.017 B:Q96SW2:0.017
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ALA A:695 A:971 22.0 0.191 T 60.4 39.9 17.0 0.148 0.043 B:Q96SW2:0.043
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ALA A:695 A:971 22.0 0.191 T 63.2 34.8 17.0 0.148 0.043 B:Q96SW2:0.043
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ALA A:695 A:971 22.0 0.191 T -91.3 9.2 22.0 0.191 0.0 HOH
 4.946
 N
 O
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ALA A:695 A:971 20.0 0.174 T -92.1 8.8 20.0 0.174 0.0 HOH
 5.032
 N
 O
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ALA A:695 A:971 21.0 0.183 T -95.3 18.9 21.0 0.183 0.0 HOH
 4.917
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ALA A:971 A:971 22.0 0.191 T -91.9 21.0