Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61076540 | . | T | A | CCDS31576.1:NM_001923.4:c.2576cAg>cTg_NP_001914.3:p.859Q>L | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | GLN | A:859 | A:859 | 58.0 | NA | E | -88.5 | 139.5 | 58.0 | NA | NA |
HOH |
6.800 |
N |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | GLN | B:859 | Y:859 | 122.0 | 0.678 | E | -97.9 | 140.7 | 122.0 | 0.678 | 0.0 | ||||||
| GLN | D:859 | B:859 | 117.0 | 0.65 | E | -96.6 | 142.0 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | GLN | A:859 | A:859 | 116.0 | 0.644 | E | -101.9 | 140.0 | 116.0 | 0.644 | 0.0 | ||||||
| GLN | B:859 | B:859 | 82.0 | NA | E | -101.7 | 139.5 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | GLN | A:859 | A:859 | 82.0 | 0.456 | E | -99.0 | 130.1 | 82.0 | 0.456 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | GLN | A:859 | A:859 | 98.0 | 0.544 | E | -61.5 | 142.5 | 98.0 | 0.544 | 0.0 | ||||||
| GLN | B:859 | B:859 | 94.0 | 0.522 | E | -65.6 | 143.0 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | GLN | A:859 | A:859 | 112.0 | 0.622 | E | -102.5 | 136.5 | 112.0 | 0.622 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | GLN | B:859 | B:859 | 99.0 | 0.55 | E | -112.6 | 124.1 | 99.0 | 0.55 | 0.0 | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | GLN | A:859 | A:859 | 127.0 | 0.706 | E | -112.4 | 136.1 | 127.0 | 0.706 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | GLN | B:859 | Y:859 | 114.0 | 0.633 | E | -75.1 | 130.4 | 114.0 | 0.633 | 0.0 | ||||||
| GLN | E:859 | B:859 | 118.0 | 0.656 | E | -75.8 | 130.9 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | GLN | A:859 | A:859 | 88.0 | 0.489 | E | -123.6 | 139.2 | 88.0 | 0.489 | 0.0 | ||||||
| GLN | D:859 | D:859 | 87.0 | 0.483 | E | -123.8 | 140.1 | NA | NA | NA | |||||||||||||
| GLN | G:859 | G:859 | 88.0 | 0.489 | E | -124.0 | 140.3 | NA | NA | NA | |||||||||||||
| GLN | J:859 | J:859 | 90.0 | 0.5 | E | -123.7 | 141.4 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLN | Z:859 | d:859 | 104.0 | 0.578 | E | -81.3 | 149.2 | 104.0 | 0.578 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | GLN | A:861 | A:859 | 100.0 | 0.556 | E | -106.4 | 130.0 | 100.0 | 0.556 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | GLN | A:861 | A:859 | 84.0 | 0.467 | E | -121.2 | 146.6 | 84.0 | 0.467 | 0.0 |
HOH |
7.624 |
O |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLN | T:862 | d:859 | 82.0 | 0.456 | E | -81.4 | 147.1 | 82.0 | 0.456 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLN | N:862 | d:859 | 77.0 | 0.428 | E | -82.5 | 144.7 | 77.0 | 0.428 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLN | Z:862 | d:859 | 82.0 | 0.456 | E | -82.4 | 145.2 | 71.0 | 0.394 | 0.062 |
AA:Q13619:0.061 |
|||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLN | Z:862 | d:859 | 82.0 | 0.456 | E | -82.4 | 145.1 | 82.0 | 0.456 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLN | A:863 | A:859 | 90.0 | 0.5 | E | -91.8 | 133.0 | 90.0 | 0.5 | 0.0 | ||||||
| GLN | C:863 | C:859 | 45.0 | NA | E | -91.8 | 133.3 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:863 | K:859 | 102.0 | 0.567 | E | -107.2 | 133.6 | 102.0 | 0.567 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:882 | K:859 | 92.0 | 0.511 | E | -114.3 | 130.2 | 92.0 | 0.511 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:882 | K:859 | 100.0 | 0.556 | E | -113.5 | 130.3 | 100.0 | 0.556 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | K:882 | K:859 | 140.0 | 0.778 | E | -108.8 | 136.9 | 140.0 | 0.778 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLN | L:882 | K:859 | 102.0 | 0.567 | E | -110.1 | 136.6 | 102.0 | 0.567 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLN | C:878 | C:859 | 89.0 | 0.494 | E | -91.8 | 133.0 | 89.0 | 0.494 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | GLN | A:878 | A:859 | 116.0 | 0.644 | E | -107.3 | 135.4 | 116.0 | 0.644 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLN | A:878 | A:859 | 60.0 | NA | E | -119.6 | 132.5 | 60.0 | NA | NA | ||||||
| GLN | E:878 | E:859 | 47.0 | NA | E | -93.5 | 124.5 | NA | NA | NA | |||||||||||||
| GLN | I:878 | I:859 | 46.0 | NA | E | -93.5 | 124.5 | NA | NA | NA | |||||||||||||
| GLN | M:878 | M:859 | 47.0 | NA | E | -93.6 | 124.5 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:877 | A:859 | 86.0 | 0.478 | E | -105.9 | 140.5 | 86.0 | 0.478 | 0.0 |
HOH |
4.343 |
C |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:877 | A:859 | 87.0 | 0.483 | E | -91.9 | 133.3 | 87.0 | 0.483 | 0.0 |
HOH |
7.225 |
O |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:877 | A:859 | 94.0 | 0.522 | E | -98.5 | 137.9 | 94.0 | 0.522 | 0.0 |
HOH |
7.291 |
O |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLN | A:877 | A:859 | 55.0 | NA | E | -110.2 | 119.4 | 55.0 | NA | NA | ||||||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLN | A:877 | A:859 | 56.0 | NA | E | -85.1 | 122.9 | 56.0 | NA | NA | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLN | A:877 | A:859 | 53.0 | NA | E | -107.6 | 121.3 | 53.0 | NA | NA | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | GLN | A:877 | A:859 | 114.0 | 0.633 | E | -76.3 | 151.1 | 114.0 | 0.633 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | GLN | A:858 | A:859 | 115.0 | 0.639 | E | -98.0 | 148.0 | 115.0 | 0.639 | 0.0 |
HOH |
8.418 |
OE1 |
O |
||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 90.0 | 0.5 | E | -115.3 | 127.7 | 90.0 | 0.5 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 107.0 | 0.594 | E | -113.5 | 127.0 | 107.0 | 0.594 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 114.0 | 0.633 | E | -104.4 | 134.7 | 114.0 | 0.633 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 117.0 | 0.65 | E | -92.3 | 128.1 | 117.0 | 0.65 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 113.0 | 0.628 | E | -97.8 | 110.5 | 113.0 | 0.628 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 123.0 | 0.683 | E | -109.6 | 126.1 | 123.0 | 0.683 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 121.0 | 0.672 | E | -81.3 | 114.9 | 121.0 | 0.672 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 123.0 | 0.683 | E | -90.6 | 119.2 | 123.0 | 0.683 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLN | A:862 | A:859 | 104.0 | 0.578 | E | -91.4 | 124.9 | 104.0 | 0.578 | 0.0 | ||||||
| GLN | B:862 | B:859 | 109.0 | 0.606 | E | -109.6 | 129.9 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLN | A:859 | A:859 | 120.0 | 0.667 | E | -127.2 | 124.6 | 120.0 | 0.667 | 0.0 | ||||||
| GLN | B:859 | B:859 | 133.0 | 0.739 | E | -106.1 | 124.1 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLN | A:859 | A:859 | 113.0 | 0.628 | E | -82.3 | 158.4 | 113.0 | 0.628 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | GLN | A:859 | A:859 | 122.0 | 0.678 | -159.2 | 97.0 | 59.0 | 0.328 | 0.35 |
C:Q13619:0.35 |
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| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:878 | A:859 | 106.0 | 0.589 | E | -105.9 | 127.6 | 106.0 | 0.589 | 0.0 | ||||||
| GLN | C:878 | C:859 | 93.0 | 0.517 | E | -108.9 | 127.0 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:878 | A:859 | 88.0 | 0.489 | E | -142.8 | 121.2 | 88.0 | 0.489 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:878 | A:859 | 85.0 | 0.472 | E | -112.3 | 140.6 | 85.0 | 0.472 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLN | A:878 | A:859 | 84.0 | 0.467 | E | -99.6 | 138.9 | 84.0 | 0.467 | 0.0 |
HOH |
7.212 |
C |
O |
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| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | GLN | A:869 | A:859 | 140.0 | 0.778 | E | -91.3 | 134.6 | 140.0 | 0.778 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | GLN | A:869 | A:859 | 84.0 | 0.467 | E | -86.3 | 154.4 | 84.0 | 0.467 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | GLN | A:877 | A:859 | 121.0 | 0.672 | E | -114.3 | 122.8 | 121.0 | 0.672 | 0.0 | ||||||
| GLN | C:877 | C:859 | 120.0 | 0.667 | E | -114.3 | 123.0 | NA | NA | NA | |||||||||||||
| GLN | E:877 | E:859 | 123.0 | 0.683 | E | -114.2 | 122.8 | NA | NA | NA | |||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLN | B:555 | B:859 | 67.0 | 0.372 | E | -124.4 | 143.5 | 67.0 | 0.372 | 0.0 |
HOH |
3.940 |
CA |
O |
||
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLN | B:555 | B:859 | 95.0 | 0.528 | E | -133.0 | 137.4 | 95.0 | 0.528 | 0.0 |
HOH |
3.330 |
NE2 |
O |
||
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | GLN | A:559 | A:859 | 139.0 | 0.772 | E | -99.5 | 137.4 | 139.0 | 0.772 | 0.0 | ||||||
| GLN | D:559 | D:859 | 93.0 | 0.517 | E | -143.4 | 134.6 | NA | NA | NA | |||||||||||||
| GLN | G:559 | G:859 | 139.0 | 0.772 | E | -96.0 | 149.5 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | GLN | A:575 | A:859 | 86.0 | 0.478 | E | -124.7 | 153.1 | 86.0 | 0.478 | 0.0 |
HOH |
7.111 |
N |
O |
||
| GLN | D:575 | D:859 | 86.0 | 0.478 | E | -124.8 | 153.7 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLN | A:575 | A:859 | 104.0 | 0.578 | E | -119.1 | 139.7 | 104.0 | 0.578 | 0.0 | ||||||
| GLN | D:575 | D:859 | 105.0 | 0.583 | E | -119.2 | 142.1 | NA | NA | NA | |||||||||||||
| GLN | G:575 | G:859 | 105.0 | 0.583 | E | -119.2 | 139.7 | NA | NA | NA | |||||||||||||
| GLN | J:575 | J:859 | 104.0 | 0.578 | E | -119.5 | 139.6 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLN | A:575 | A:859 | 87.0 | 0.483 | E | -120.3 | 122.7 | 87.0 | 0.483 | 0.0 | ||||||
| GLN | D:575 | D:859 | 70.0 | 0.389 | E | -123.6 | 128.2 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:583 | A:859 | 96.0 | 0.533 | E | -124.9 | 146.6 | 96.0 | 0.533 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | GLN | A:583 | A:859 | 106.0 | 0.589 | E | -121.8 | 126.7 | 106.0 | 0.589 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:583 | A:859 | 110.0 | 0.611 | E | -119.6 | 143.5 | 110.0 | 0.611 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:583 | A:859 | 94.0 | 0.522 | E | -137.7 | 145.8 | 94.0 | 0.522 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLN | A:583 | A:859 | 94.0 | 0.522 | E | -118.1 | 140.5 | 94.0 | 0.522 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLN | A:583 | A:859 | 56.0 | NA | E | -109.9 | 130.8 | 56.0 | NA | NA | ||||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLN | A:583 | A:859 | 90.0 | 0.5 | E | -106.8 | 136.6 | 90.0 | 0.5 | 0.0 | ||||||
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLN | A:583 | A:859 | 91.0 | 0.506 | E | -106.8 | 139.4 | 91.0 | 0.506 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | GLN | A:859 | A:859 | 104.0 | 0.578 | E | -121.7 | 133.1 | |