Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61077421 . G A CCDS31576.1:NM_001923.4:c.2413Cac>Tac_NP_001914.3:p.805H>Y Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 HIS A:805 A:805 4.0 0.021 E -102.4 112.5 4.0 0.021 0.0 HOH
7.510
O
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 HIS B:805 Y:805 2.0 0.01 E -83.1 137.7 2.0 0.01 0.0
HIS D:805 B:805 3.0 0.015 E -84.7 138.4 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 HIS A:805 A:805 2.0 0.01 E -115.5 115.6 2.0 0.01 0.0
HIS B:805 B:805 2.0 0.01 E -115.1 115.5 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 HIS A:805 A:805 6.0 0.031 E -93.8 121.4 6.0 0.031 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 HIS A:805 A:805 8.0 0.041 E -89.5 123.4 8.0 0.041 0.0
HIS B:805 B:805 7.0 0.036 E -87.8 125.0 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 HIS A:805 A:805 4.0 0.021 E -104.5 118.4 4.0 0.021 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 HIS B:805 B:805 10.0 0.051 E -97.7 111.6 10.0 0.051 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 HIS A:805 A:805 2.0 0.01 E -88.3 113.6 2.0 0.01 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 HIS B:805 Y:805 7.0 0.036 E -82.6 134.9 7.0 0.036 0.0
HIS E:805 B:805 4.0 0.021 E -83.2 135.1 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 HIS A:805 A:805 3.0 0.015 E -96.7 123.6 3.0 0.015 0.0
HIS D:805 D:805 3.0 0.015 E -96.7 123.1 NA NA NA
HIS G:805 G:805 4.0 0.021 E -96.2 123.3 NA NA NA
HIS J:805 J:805 3.0 0.015 E -96.3 123.2 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 HIS Z:805 d:805 4.0 0.021 E -97.1 109.5 4.0 0.021 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 HIS A:807 A:805 3.0 0.015 E -93.7 115.7 3.0 0.015 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 HIS A:807 A:805 5.0 0.026 E -110.1 118.6 5.0 0.026 0.0 HOH
2.869
NE2
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 HIS T:808 d:805 4.0 0.021 E -96.1 111.2 4.0 0.021 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 HIS N:808 d:805 4.0 0.021 E -98.7 112.3 4.0 0.021 0.0
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 HIS Z:808 d:805 4.0 0.021 E -98.4 113.0 4.0 0.021 0.0
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 HIS Z:808 d:805 4.0 0.021 E -98.5 113.2 4.0 0.021 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 HIS A:809 A:805 3.0 0.015 E -101.4 117.8 3.0 0.015 0.0
HIS C:809 C:805 4.0 0.021 E -101.6 117.6 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 HIS K:809 K:805 3.0 0.015 E -108.5 117.1 3.0 0.015 0.0
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 HIS K:828 K:805 4.0 0.021 E -104.5 111.4 4.0 0.021 0.0
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 HIS K:828 K:805 8.0 0.041 E -113.5 119.3 8.0 0.041 0.0
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 HIS K:828 K:805 6.0 0.031 E -110.1 121.7 6.0 0.031 0.0
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 HIS L:828 K:805 2.0 0.01 E -110.3 121.3 2.0 0.01 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 HIS C:824 C:805 4.0 0.021 E -101.6 117.7 4.0 0.021 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 HIS A:824 A:805 4.0 0.021 E -94.9 124.1 4.0 0.021 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 HIS A:824 A:805 28.0 NA E -109.7 125.5 28.0 NA NA
HIS E:824 E:805 23.0 NA E -104.3 114.7 NA NA NA
HIS I:824 I:805 23.0 NA E -104.3 114.7 NA NA NA
HIS M:824 M:805 24.0 NA E -104.3 114.7 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 HIS A:823 A:805 3.0 0.015 E -104.0 118.0 3.0 0.015 0.0 HOH
3.718
CE1
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 HIS A:823 A:805 4.0 0.021 E -101.6 117.8 4.0 0.021 0.0 HOH
4.198
NE2
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 HIS A:823 A:805 4.0 0.021 E -104.7 120.2 4.0 0.021 0.0 HOH
4.266
C
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 HIS A:823 A:805 5.0 0.026 E -103.9 109.5 5.0 0.026 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 HIS A:823 A:805 5.0 0.026 E -101.5 108.6 5.0 0.026 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 HIS A:823 A:805 5.0 0.026 E -102.9 111.4 5.0 0.026 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 HIS A:823 A:805 7.0 0.036 E -107.2 123.8 7.0 0.036 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 HIS A:804 A:805 2.0 0.01 E -94.2 137.8 2.0 0.01 0.0 HOH
5.820
CE1
O
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 4.0 0.021 E -90.6 132.3 4.0 0.021 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 3.0 0.015 E -108.0 126.4 3.0 0.015 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 3.0 0.015 E -100.8 127.3 3.0 0.015 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 2.0 0.01 E -104.1 110.6 2.0 0.01 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 3.0 0.015 E -99.0 114.3 3.0 0.015 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 2.0 0.01 E -100.5 122.1 2.0 0.01 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 2.0 0.01 E -99.9 115.0 2.0 0.01 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 3.0 0.015 E -103.8 125.7 3.0 0.015 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 HIS A:808 A:805 2.0 0.01 E -89.7 123.6 2.0 0.01 0.0
HIS B:808 B:805 4.0 0.021 E -82.1 129.1 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 HIS A:805 A:805 7.0 0.036 E -133.0 120.4 7.0 0.036 0.0
HIS B:805 B:805 3.0 0.015 E -75.0 119.7 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 HIS A:805 A:805 2.0 0.01 E -106.0 130.8 2.0 0.01 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 HIS A:805 A:805 2.0 0.01 E -73.6 111.3 2.0 0.01 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 HIS A:824 A:805 3.0 0.015 E -103.3 159.4 3.0 0.015 0.0
HIS C:824 C:805 4.0 0.021 E -114.5 123.9 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 HIS A:824 A:805 5.0 0.026 E -73.5 105.7 5.0 0.026 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 HIS A:824 A:805 4.0 0.021 E -95.5 122.0 4.0 0.021 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 HIS A:824 A:805 2.0 0.01 E -91.0 126.0 2.0 0.01 0.0 HOH
4.633
NE2
O
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 HIS A:815 A:805 6.0 0.031 E -101.4 117.3 6.0 0.031 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 HIS A:815 A:805 9.0 0.046 E -108.7 125.3 9.0 0.046 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 HIS A:823 A:805 8.0 0.041 E -131.7 137.6 8.0 0.041 0.0
HIS C:823 C:805 7.0 0.036 E -131.9 137.1 NA NA NA
HIS E:823 E:805 7.0 0.036 E -131.3 137.1 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
2019-12-18 HIS B:501 B:805 4.0 0.021 E -103.2 108.9 4.0 0.021 0.0 HOH
4.340
NE2
O
6ue5 2 Q16531 100.0 0.0 X-RAY
2019-12-18 HIS B:501 B:805 6.0 0.031 E -98.5 111.3 6.0 0.031 0.0 HOH
3.605
CE1
O
6td3 1 Q16531 100.0 0.0 X-RAY
2020-06-17 HIS A:505 A:805 6.0 0.031 E -109.9 116.5 6.0 0.031 0.0
HIS D:505 D:805 6.0 0.031 E -102.6 117.2 NA NA NA
HIS G:505 G:805 5.0 0.026 E -107.8 116.4 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
2016-02-24 HIS A:521 A:805 2.0 0.01 E -104.8 120.4 2.0 0.01 0.0 HOH
4.435
C
O
HIS D:521 D:805 3.0 0.015 E -105.9 119.8 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
2018-11-07 HIS A:521 A:805 4.0 0.021 E -103.6 112.9 4.0 0.021 0.0
HIS D:521 D:805 4.0 0.021 E -103.6 109.1 NA NA NA
HIS G:521 G:805 4.0 0.021 E -102.8 112.2 NA NA NA
HIS J:521 J:805 5.0 0.026 E -103.9 113.1 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
2018-11-07 HIS A:521 A:805 4.0 0.021 E -102.9 124.8 4.0 0.021 0.0
HIS D:521 D:805 4.0 0.021 E -100.2 122.2 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
2018-05-30 HIS A:529 A:805 3.0 0.015 E -91.2 126.5 3.0 0.015 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
2018-06-06 HIS A:529 A:805 1.0 0.005 E -81.1 133.6 1.0 0.005 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
2018-05-30 HIS A:529 A:805 4.0 0.021 E -81.3 117.4 4.0 0.021 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
2018-05-30 HIS A:529 A:805 3.0 0.015 E -104.9 105.5 3.0 0.015 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
2018-05-30 HIS A:529 A:805 4.0 0.021 E -95.6 121.4 4.0 0.021 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
2019-11-13 HIS A:529 A:805 5.0 0.026 E -105.2 117.6 5.0 0.026 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
2019-11-13 HIS A:529 A:805 4.0 0.021 E -106.4 114.6 4.0 0.021 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
2019-11-13 HIS A:529 A:805 4.0 0.021 E -106.2 117.1 4.0 0.021 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 HIS A:805 A:805 6.0 0.031 E -100.6 114.3