Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61077421 | . | G | A | CCDS31576.1:NM_001923.4:c.2413Cac>Tac_NP_001914.3:p.805H>Y | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | HIS | A:805 | A:805 | 4.0 | 0.021 | E | -102.4 | 112.5 | 4.0 | 0.021 | 0.0 |
HOH |
7.510 |
O |
O |
||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | HIS | B:805 | Y:805 | 2.0 | 0.01 | E | -83.1 | 137.7 | 2.0 | 0.01 | 0.0 | ||||||
HIS | D:805 | B:805 | 3.0 | 0.015 | E | -84.7 | 138.4 | NA | NA | NA | |||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | HIS | A:805 | A:805 | 2.0 | 0.01 | E | -115.5 | 115.6 | 2.0 | 0.01 | 0.0 | ||||||
HIS | B:805 | B:805 | 2.0 | 0.01 | E | -115.1 | 115.5 | NA | NA | NA | |||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | HIS | A:805 | A:805 | 6.0 | 0.031 | E | -93.8 | 121.4 | 6.0 | 0.031 | 0.0 | ||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | HIS | A:805 | A:805 | 8.0 | 0.041 | E | -89.5 | 123.4 | 8.0 | 0.041 | 0.0 | ||||||
HIS | B:805 | B:805 | 7.0 | 0.036 | E | -87.8 | 125.0 | NA | NA | NA | |||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | HIS | A:805 | A:805 | 4.0 | 0.021 | E | -104.5 | 118.4 | 4.0 | 0.021 | 0.0 | ||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | HIS | B:805 | B:805 | 10.0 | 0.051 | E | -97.7 | 111.6 | 10.0 | 0.051 | 0.0 | ||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | HIS | A:805 | A:805 | 2.0 | 0.01 | E | -88.3 | 113.6 | 2.0 | 0.01 | 0.0 | ||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | HIS | B:805 | Y:805 | 7.0 | 0.036 | E | -82.6 | 134.9 | 7.0 | 0.036 | 0.0 | ||||||
HIS | E:805 | B:805 | 4.0 | 0.021 | E | -83.2 | 135.1 | NA | NA | NA | |||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | HIS | A:805 | A:805 | 3.0 | 0.015 | E | -96.7 | 123.6 | 3.0 | 0.015 | 0.0 | ||||||
HIS | D:805 | D:805 | 3.0 | 0.015 | E | -96.7 | 123.1 | NA | NA | NA | |||||||||||||
HIS | G:805 | G:805 | 4.0 | 0.021 | E | -96.2 | 123.3 | NA | NA | NA | |||||||||||||
HIS | J:805 | J:805 | 3.0 | 0.015 | E | -96.3 | 123.2 | NA | NA | NA | |||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | HIS | Z:805 | d:805 | 4.0 | 0.021 | E | -97.1 | 109.5 | 4.0 | 0.021 | 0.0 | ||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | HIS | A:807 | A:805 | 3.0 | 0.015 | E | -93.7 | 115.7 | 3.0 | 0.015 | 0.0 | ||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | HIS | A:807 | A:805 | 5.0 | 0.026 | E | -110.1 | 118.6 | 5.0 | 0.026 | 0.0 |
HOH |
2.869 |
NE2 |
O |
||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | HIS | T:808 | d:805 | 4.0 | 0.021 | E | -96.1 | 111.2 | 4.0 | 0.021 | 0.0 | ||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | HIS | N:808 | d:805 | 4.0 | 0.021 | E | -98.7 | 112.3 | 4.0 | 0.021 | 0.0 | ||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | HIS | Z:808 | d:805 | 4.0 | 0.021 | E | -98.4 | 113.0 | 4.0 | 0.021 | 0.0 | ||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | HIS | Z:808 | d:805 | 4.0 | 0.021 | E | -98.5 | 113.2 | 4.0 | 0.021 | 0.0 | ||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | HIS | A:809 | A:805 | 3.0 | 0.015 | E | -101.4 | 117.8 | 3.0 | 0.015 | 0.0 | ||||||
HIS | C:809 | C:805 | 4.0 | 0.021 | E | -101.6 | 117.6 | NA | NA | NA | |||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | HIS | K:809 | K:805 | 3.0 | 0.015 | E | -108.5 | 117.1 | 3.0 | 0.015 | 0.0 | ||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | HIS | K:828 | K:805 | 4.0 | 0.021 | E | -104.5 | 111.4 | 4.0 | 0.021 | 0.0 | ||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | HIS | K:828 | K:805 | 8.0 | 0.041 | E | -113.5 | 119.3 | 8.0 | 0.041 | 0.0 | ||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | HIS | K:828 | K:805 | 6.0 | 0.031 | E | -110.1 | 121.7 | 6.0 | 0.031 | 0.0 | ||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | HIS | L:828 | K:805 | 2.0 | 0.01 | E | -110.3 | 121.3 | 2.0 | 0.01 | 0.0 | ||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | HIS | C:824 | C:805 | 4.0 | 0.021 | E | -101.6 | 117.7 | 4.0 | 0.021 | 0.0 | ||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | HIS | A:824 | A:805 | 4.0 | 0.021 | E | -94.9 | 124.1 | 4.0 | 0.021 | 0.0 | ||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | HIS | A:824 | A:805 | 28.0 | NA | E | -109.7 | 125.5 | 28.0 | NA | NA | ||||||
HIS | E:824 | E:805 | 23.0 | NA | E | -104.3 | 114.7 | NA | NA | NA | |||||||||||||
HIS | I:824 | I:805 | 23.0 | NA | E | -104.3 | 114.7 | NA | NA | NA | |||||||||||||
HIS | M:824 | M:805 | 24.0 | NA | E | -104.3 | 114.7 | NA | NA | NA | |||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | HIS | A:823 | A:805 | 3.0 | 0.015 | E | -104.0 | 118.0 | 3.0 | 0.015 | 0.0 |
HOH |
3.718 |
CE1 |
O |
||
3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | HIS | A:823 | A:805 | 4.0 | 0.021 | E | -101.6 | 117.8 | 4.0 | 0.021 | 0.0 |
HOH |
4.198 |
NE2 |
O |
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3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | HIS | A:823 | A:805 | 4.0 | 0.021 | E | -104.7 | 120.2 | 4.0 | 0.021 | 0.0 |
HOH |
4.266 |
C |
O |
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4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | HIS | A:823 | A:805 | 5.0 | 0.026 | E | -103.9 | 109.5 | 5.0 | 0.026 | 0.0 | ||||||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | HIS | A:823 | A:805 | 5.0 | 0.026 | E | -101.5 | 108.6 | 5.0 | 0.026 | 0.0 | ||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | HIS | A:823 | A:805 | 5.0 | 0.026 | E | -102.9 | 111.4 | 5.0 | 0.026 | 0.0 | ||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | HIS | A:823 | A:805 | 7.0 | 0.036 | E | -107.2 | 123.8 | 7.0 | 0.036 | 0.0 | ||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | HIS | A:804 | A:805 | 2.0 | 0.01 | E | -94.2 | 137.8 | 2.0 | 0.01 | 0.0 |
HOH |
5.820 |
CE1 |
O |
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3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 4.0 | 0.021 | E | -90.6 | 132.3 | 4.0 | 0.021 | 0.0 | ||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 3.0 | 0.015 | E | -108.0 | 126.4 | 3.0 | 0.015 | 0.0 | ||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 3.0 | 0.015 | E | -100.8 | 127.3 | 3.0 | 0.015 | 0.0 | ||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 2.0 | 0.01 | E | -104.1 | 110.6 | 2.0 | 0.01 | 0.0 | ||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 3.0 | 0.015 | E | -99.0 | 114.3 | 3.0 | 0.015 | 0.0 | ||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 2.0 | 0.01 | E | -100.5 | 122.1 | 2.0 | 0.01 | 0.0 | ||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 2.0 | 0.01 | E | -99.9 | 115.0 | 2.0 | 0.01 | 0.0 | ||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 3.0 | 0.015 | E | -103.8 | 125.7 | 3.0 | 0.015 | 0.0 | ||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | HIS | A:808 | A:805 | 2.0 | 0.01 | E | -89.7 | 123.6 | 2.0 | 0.01 | 0.0 | ||||||
HIS | B:808 | B:805 | 4.0 | 0.021 | E | -82.1 | 129.1 | NA | NA | NA | |||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | HIS | A:805 | A:805 | 7.0 | 0.036 | E | -133.0 | 120.4 | 7.0 | 0.036 | 0.0 | ||||||
HIS | B:805 | B:805 | 3.0 | 0.015 | E | -75.0 | 119.7 | NA | NA | NA | |||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | HIS | A:805 | A:805 | 2.0 | 0.01 | E | -106.0 | 130.8 | 2.0 | 0.01 | 0.0 | ||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | HIS | A:805 | A:805 | 2.0 | 0.01 | E | -73.6 | 111.3 | 2.0 | 0.01 | 0.0 | ||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | HIS | A:824 | A:805 | 3.0 | 0.015 | E | -103.3 | 159.4 | 3.0 | 0.015 | 0.0 | ||||||
HIS | C:824 | C:805 | 4.0 | 0.021 | E | -114.5 | 123.9 | NA | NA | NA | |||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | HIS | A:824 | A:805 | 5.0 | 0.026 | E | -73.5 | 105.7 | 5.0 | 0.026 | 0.0 | ||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | HIS | A:824 | A:805 | 4.0 | 0.021 | E | -95.5 | 122.0 | 4.0 | 0.021 | 0.0 | ||||||
4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | HIS | A:824 | A:805 | 2.0 | 0.01 | E | -91.0 | 126.0 | 2.0 | 0.01 | 0.0 |
HOH |
4.633 |
NE2 |
O |
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4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | HIS | A:815 | A:805 | 6.0 | 0.031 | E | -101.4 | 117.3 | 6.0 | 0.031 | 0.0 | ||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | HIS | A:815 | A:805 | 9.0 | 0.046 | E | -108.7 | 125.3 | 9.0 | 0.046 | 0.0 | ||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | HIS | A:823 | A:805 | 8.0 | 0.041 | E | -131.7 | 137.6 | 8.0 | 0.041 | 0.0 | ||||||
HIS | C:823 | C:805 | 7.0 | 0.036 | E | -131.9 | 137.1 | NA | NA | NA | |||||||||||||
HIS | E:823 | E:805 | 7.0 | 0.036 | E | -131.3 | 137.1 | NA | NA | NA | |||||||||||||
6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | HIS | B:501 | B:805 | 4.0 | 0.021 | E | -103.2 | 108.9 | 4.0 | 0.021 | 0.0 |
HOH |
4.340 |
NE2 |
O |
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6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | HIS | B:501 | B:805 | 6.0 | 0.031 | E | -98.5 | 111.3 | 6.0 | 0.031 | 0.0 |
HOH |
3.605 |
CE1 |
O |
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6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | HIS | A:505 | A:805 | 6.0 | 0.031 | E | -109.9 | 116.5 | 6.0 | 0.031 | 0.0 | ||||||
HIS | D:505 | D:805 | 6.0 | 0.031 | E | -102.6 | 117.2 | NA | NA | NA | |||||||||||||
HIS | G:505 | G:805 | 5.0 | 0.026 | E | -107.8 | 116.4 | NA | NA | NA | |||||||||||||
5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | HIS | A:521 | A:805 | 2.0 | 0.01 | E | -104.8 | 120.4 | 2.0 | 0.01 | 0.0 |
HOH |
4.435 |
C |
O |
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HIS | D:521 | D:805 | 3.0 | 0.015 | E | -105.9 | 119.8 | NA | NA | NA | |||||||||||||
6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | HIS | A:521 | A:805 | 4.0 | 0.021 | E | -103.6 | 112.9 | 4.0 | 0.021 | 0.0 | ||||||
HIS | D:521 | D:805 | 4.0 | 0.021 | E | -103.6 | 109.1 | NA | NA | NA | |||||||||||||
HIS | G:521 | G:805 | 4.0 | 0.021 | E | -102.8 | 112.2 | NA | NA | NA | |||||||||||||
HIS | J:521 | J:805 | 5.0 | 0.026 | E | -103.9 | 113.1 | NA | NA | NA | |||||||||||||
6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | HIS | A:521 | A:805 | 4.0 | 0.021 | E | -102.9 | 124.8 | 4.0 | 0.021 | 0.0 | ||||||
HIS | D:521 | D:805 | 4.0 | 0.021 | E | -100.2 | 122.2 | NA | NA | NA | |||||||||||||
6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | HIS | A:529 | A:805 | 3.0 | 0.015 | E | -91.2 | 126.5 | 3.0 | 0.015 | 0.0 | ||||||
6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | HIS | A:529 | A:805 | 1.0 | 0.005 | E | -81.1 | 133.6 | 1.0 | 0.005 | 0.0 | ||||||
6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | HIS | A:529 | A:805 | 4.0 | 0.021 | E | -81.3 | 117.4 | 4.0 | 0.021 | 0.0 | ||||||
6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | HIS | A:529 | A:805 | 3.0 | 0.015 | E | -104.9 | 105.5 | 3.0 | 0.015 | 0.0 | ||||||
6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | HIS | A:529 | A:805 | 4.0 | 0.021 | E | -95.6 | 121.4 | 4.0 | 0.021 | 0.0 | ||||||
6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | HIS | A:529 | A:805 | 5.0 | 0.026 | E | -105.2 | 117.6 | 5.0 | 0.026 | 0.0 | ||||||
6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | HIS | A:529 | A:805 | 4.0 | 0.021 | E | -106.4 | 114.6 | 4.0 | 0.021 | 0.0 | ||||||
6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | HIS | A:529 | A:805 | 4.0 | 0.021 | E | -106.2 | 117.1 | 4.0 | 0.021 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | HIS | A:805 | A:805 | 6.0 | 0.031 | E | -100.6 | 114.3 |