Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61077800 | . | T | A | CCDS31576.1:NM_001923.4:c.2368Aac>Tac_NP_001914.3:p.790N>Y | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ASN | A:790 | A:790 | 1.0 | 0.006 | E | -147.4 | 155.5 | 1.0 | 0.006 | 0.0 |
HOH |
5.511 |
N |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ASN | B:790 | Y:790 | 1.0 | 0.006 | E | -133.1 | 150.7 | 1.0 | 0.006 | 0.0 | ||||||
| ASN | D:790 | B:790 | 1.0 | 0.006 | E | -134.9 | 150.9 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ASN | A:790 | A:790 | 3.0 | 0.019 | E | -138.3 | 149.3 | 3.0 | 0.019 | 0.0 | ||||||
| ASN | B:790 | B:790 | 2.0 | 0.013 | E | -138.5 | 149.1 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ASN | A:790 | A:790 | 2.0 | 0.013 | E | -137.4 | 156.5 | 2.0 | 0.013 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ASN | A:790 | A:790 | 2.0 | 0.013 | E | -133.5 | 167.3 | 2.0 | 0.013 | 0.0 | ||||||
| ASN | B:790 | B:790 | 2.0 | 0.013 | E | -135.1 | 167.1 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ASN | A:790 | A:790 | 2.0 | 0.013 | E | -148.9 | 152.9 | 2.0 | 0.013 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ASN | B:790 | B:790 | 2.0 | 0.013 | E | -136.8 | 152.5 | 2.0 | 0.013 | 0.0 | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ASN | A:790 | A:790 | 1.0 | 0.006 | E | -132.2 | 161.2 | 1.0 | 0.006 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ASN | B:790 | Y:790 | 2.0 | 0.013 | E | -132.4 | 154.4 | 2.0 | 0.013 | 0.0 | ||||||
| ASN | E:790 | B:790 | 2.0 | 0.013 | E | -132.2 | 154.4 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ASN | A:790 | A:790 | 2.0 | 0.013 | E | -144.8 | 158.0 | 2.0 | 0.013 | 0.0 | ||||||
| ASN | D:790 | D:790 | 2.0 | 0.013 | E | -144.8 | 158.1 | NA | NA | NA | |||||||||||||
| ASN | G:790 | G:790 | 2.0 | 0.013 | E | -138.8 | 158.4 | NA | NA | NA | |||||||||||||
| ASN | J:790 | J:790 | 3.0 | 0.019 | E | -144.0 | 157.9 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | Z:790 | d:790 | 2.0 | 0.013 | E | -130.2 | 157.2 | 2.0 | 0.013 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ASN | A:792 | A:790 | 2.0 | 0.013 | E | -148.7 | 149.6 | 2.0 | 0.013 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ASN | A:792 | A:790 | 2.0 | 0.013 | E | -142.8 | 140.8 | 2.0 | 0.013 | 0.0 |
HOH |
2.408 |
OD1 |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | T:793 | d:790 | 1.0 | 0.006 | E | -131.6 | 158.1 | 1.0 | 0.006 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | N:793 | d:790 | 3.0 | 0.019 | E | -130.0 | 156.3 | 3.0 | 0.019 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | Z:793 | d:790 | 3.0 | 0.019 | E | -130.4 | 157.5 | 3.0 | 0.019 | 0.0 | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | Z:793 | d:790 | 3.0 | 0.019 | E | -130.3 | 157.4 | 3.0 | 0.019 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASN | A:794 | A:790 | 4.0 | 0.025 | E | -144.2 | 153.1 | 4.0 | 0.025 | 0.0 | ||||||
| ASN | C:794 | C:790 | 3.0 | 0.019 | E | -144.4 | 153.1 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:794 | K:790 | 2.0 | 0.013 | E | -144.8 | 154.7 | 2.0 | 0.013 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:813 | K:790 | 1.0 | 0.006 | E | -144.5 | 151.6 | 1.0 | 0.006 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:813 | K:790 | 3.0 | 0.019 | E | -146.8 | 156.3 | 3.0 | 0.019 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:813 | K:790 | 2.0 | 0.013 | E | -145.6 | 150.2 | 2.0 | 0.013 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | L:813 | K:790 | 2.0 | 0.013 | E | -146.3 | 151.1 | 2.0 | 0.013 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASN | C:809 | C:790 | 4.0 | 0.025 | E | -144.2 | 153.1 | 4.0 | 0.025 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ASN | A:809 | A:790 | 3.0 | 0.019 | E | -121.8 | 147.4 | 3.0 | 0.019 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | A:809 | A:790 | 11.0 | NA | E | -126.6 | 130.3 | 11.0 | NA | NA | ||||||
| ASN | E:809 | E:790 | 7.0 | NA | E | -138.8 | 150.2 | NA | NA | NA | |||||||||||||
| ASN | I:809 | I:790 | 7.0 | NA | E | -138.8 | 150.2 | NA | NA | NA | |||||||||||||
| ASN | M:809 | M:790 | 9.0 | NA | E | -138.9 | 150.2 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:808 | A:790 | 2.0 | 0.013 | E | -131.3 | 158.8 | 2.0 | 0.013 | 0.0 |
HOH |
8.059 |
ND2 |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:808 | A:790 | 4.0 | 0.025 | E | -144.3 | 153.2 | 4.0 | 0.025 | 0.0 |
HOH |
2.582 |
ND2 |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:808 | A:790 | 4.0 | 0.025 | E | -141.8 | 153.2 | 4.0 | 0.025 | 0.0 |
HOH |
2.454 |
ND2 |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:808 | A:790 | 1.0 | 0.006 | E | -143.3 | 153.5 | 1.0 | 0.006 | 0.0 | ||||||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:808 | A:790 | 2.0 | 0.013 | E | -143.1 | 148.4 | 2.0 | 0.013 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:808 | A:790 | 2.0 | 0.013 | E | -144.2 | 156.6 | 2.0 | 0.013 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ASN | A:808 | A:790 | 3.0 | 0.019 | E | -122.9 | 145.7 | 3.0 | 0.019 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ASN | A:789 | A:790 | 2.0 | 0.013 | E | -135.0 | 159.6 | 2.0 | 0.013 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 2.0 | 0.013 | E | -133.4 | 165.8 | 2.0 | 0.013 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 3.0 | 0.019 | E | -143.0 | 162.7 | 3.0 | 0.019 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 2.0 | 0.013 | E | -136.2 | 162.4 | 2.0 | 0.013 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 2.0 | 0.013 | E | -148.2 | 142.5 | 2.0 | 0.013 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 1.0 | 0.006 | E | -142.7 | 153.9 | 1.0 | 0.006 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 3.0 | 0.019 | E | -133.5 | 155.9 | 3.0 | 0.019 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 3.0 | 0.019 | E | -133.3 | 146.4 | 3.0 | 0.019 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 3.0 | 0.019 | E | -139.8 | 153.2 | 3.0 | 0.019 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:793 | A:790 | 2.0 | 0.013 | E | -154.4 | 141.3 | 2.0 | 0.013 | 0.0 | ||||||
| ASN | B:793 | B:790 | 2.0 | 0.013 | E | -153.1 | 143.2 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASN | A:790 | A:790 | 4.0 | 0.025 | E | -141.1 | 159.8 | 4.0 | 0.025 | 0.0 | ||||||
| ASN | B:790 | B:790 | 1.0 | 0.006 | E | -169.4 | 161.8 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASN | A:790 | A:790 | 3.0 | 0.019 | E | -144.5 | 160.3 | 3.0 | 0.019 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ASN | A:790 | A:790 | 2.0 | 0.013 | E | -123.9 | 168.8 | 2.0 | 0.013 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:809 | A:790 | 1.0 | 0.006 | E | -141.5 | 155.6 | 1.0 | 0.006 | 0.0 | ||||||
| ASN | C:809 | C:790 | 4.0 | 0.025 | E | -136.5 | 153.2 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:809 | A:790 | 0.0 | 0.0 | E | -130.6 | 152.8 | 0.0 | 0.0 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:809 | A:790 | 3.0 | 0.019 | E | -139.0 | 158.8 | 3.0 | 0.019 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:809 | A:790 | 3.0 | 0.019 | E | -137.7 | 155.4 | 3.0 | 0.019 | 0.0 | ||||||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ASN | A:800 | A:790 | 3.0 | 0.019 | E | -144.3 | 153.4 | 3.0 | 0.019 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ASN | A:800 | A:790 | 4.0 | 0.025 | E | -138.7 | 153.9 | 4.0 | 0.025 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:808 | A:790 | 8.0 | 0.05 | -171.5 | 107.4 | 8.0 | 0.05 | 0.0 | |||||||
| ASN | C:808 | C:790 | 7.0 | 0.044 | -173.2 | 106.8 | NA | NA | NA | ||||||||||||||
| ASN | E:808 | E:790 | 8.0 | 0.05 | -171.6 | 107.6 | NA | NA | NA | ||||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ASN | B:486 | B:790 | 1.0 | 0.006 | E | -136.8 | 152.1 | 1.0 | 0.006 | 0.0 |
HOH |
4.655 |
ND2 |
O |
||
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ASN | B:486 | B:790 | 1.0 | 0.006 | E | -133.8 | 156.0 | 1.0 | 0.006 | 0.0 |
HOH |
2.908 |
OD1 |
O |
||
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | ASN | A:490 | A:790 | 2.0 | 0.013 | E | -138.4 | 158.5 | 2.0 | 0.013 | 0.0 | ||||||
| ASN | D:490 | D:790 | 2.0 | 0.013 | E | -137.7 | 148.5 | NA | NA | NA | |||||||||||||
| ASN | G:490 | G:790 | 2.0 | 0.013 | E | -145.7 | 161.3 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | ASN | A:506 | A:790 | 1.0 | 0.006 | E | -148.2 | 158.1 | 1.0 | 0.006 | 0.0 |
HOH |
2.731 |
OD1 |
O |
||
| ASN | D:506 | D:790 | 1.0 | 0.006 | E | -149.8 | 157.9 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ASN | A:506 | A:790 | 3.0 | 0.019 | E | -142.1 | 144.7 | 3.0 | 0.019 | 0.0 | ||||||
| ASN | D:506 | D:790 | 3.0 | 0.019 | E | -141.0 | 148.2 | NA | NA | NA | |||||||||||||
| ASN | G:506 | G:790 | 4.0 | 0.025 | E | -141.9 | 142.6 | NA | NA | NA | |||||||||||||
| ASN | J:506 | J:790 | 2.0 | 0.013 | E | -141.5 | 157.9 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ASN | A:506 | A:790 | 2.0 | 0.013 | E | -153.0 | 156.2 | 2.0 | 0.013 | 0.0 | ||||||
| ASN | D:506 | D:790 | 2.0 | 0.013 | E | -153.1 | 156.3 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:514 | A:790 | 3.0 | 0.019 | E | -138.9 | 154.0 | 3.0 | 0.019 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | ASN | A:514 | A:790 | 3.0 | 0.019 | E | -139.2 | 149.9 | 3.0 | 0.019 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:514 | A:790 | 2.0 | 0.013 | E | -138.7 | 158.8 | 2.0 | 0.013 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:514 | A:790 | 0.0 | 0.0 | E | -143.2 | 139.9 | 0.0 | 0.0 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:514 | A:790 | 2.0 | 0.013 | E | -140.2 | 152.2 | 2.0 | 0.013 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ASN | A:514 | A:790 | 3.0 | 0.019 | E | -138.8 | 153.2 | 3.0 | 0.019 | 0.0 | ||||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ASN | A:514 | A:790 | 2.0 | 0.013 | E | -142.4 | 151.0 | 2.0 | 0.013 | 0.0 | ||||||
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ASN | A:514 | A:790 | 3.0 | 0.019 | E | -142.1 | 156.0 | 3.0 | 0.019 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ASN | A:790 | A:790 | 2.0 | 0.013 | E | -138.8 | 152.6 | |