Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61081095 . C A CCDS31576.1:NM_001923.4:c.1945Gtc>Ttc_NP_001914.3:p.649V>F Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 VAL A:649 A:649 0.0 0.0 E -116.2 124.4 0.0 0.0 0.0 HOH
6.573
CG1
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 VAL B:649 Y:649 0.0 0.0 E -125.2 130.5 0.0 0.0 0.0
VAL D:649 B:649 0.0 0.0 E -125.3 130.3 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 VAL A:649 A:649 0.0 0.0 E -115.6 145.0 0.0 0.0 0.0
VAL B:649 B:649 0.0 0.0 E -115.5 145.0 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 VAL A:649 A:649 0.0 0.0 E -123.1 137.9 0.0 0.0 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 VAL A:649 A:649 0.0 0.0 E -116.3 148.5 0.0 0.0 0.0
VAL B:649 B:649 0.0 0.0 E -120.0 141.9 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 VAL A:649 A:649 0.0 0.0 E -111.9 130.7 0.0 0.0 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 VAL B:649 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 VAL A:649 A:649 0.0 0.0 E -117.2 120.2 0.0 0.0 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 VAL B:649 Y:649 0.0 0.0 E -138.8 118.6 0.0 0.0 0.0
VAL E:649 B:649 0.0 0.0 E -139.0 118.5 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 VAL A:649 NA:NA DO NA DO DO DO NA NA NA
VAL D:649 NA:NA DO NA DO DO DO NA NA NA
VAL G:649 NA:NA DO NA DO DO DO NA NA NA
VAL J:649 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 VAL Z:649 d:649 0.0 0.0 E -66.3 145.5 0.0 0.0 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 VAL A:651 A:649 1.0 0.006 E -125.9 131.7 1.0 0.006 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 VAL A:651 A:649 0.0 0.0 E -121.9 117.7 0.0 0.0 0.0
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 VAL T:652 d:649 0.0 0.0 E -66.3 145.6 0.0 0.0 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 VAL N:652 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 VAL Z:652 d:649 35.0 NA E -80.7 142.1 35.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 VAL Z:652 d:649 35.0 NA E -80.6 142.2 35.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 VAL A:653 A:649 0.0 0.0 -79.4 177.2 0.0 0.0 0.0
VAL C:653 C:649 0.0 0.0 -79.5 177.0 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 VAL K:653 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 VAL K:672 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 VAL K:672 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 VAL K:672 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 VAL L:672 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 VAL C:668 C:649 0.0 0.0 -79.2 177.1 0.0 0.0 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 VAL A:668 A:649 0.0 0.0 E -103.4 121.4 0.0 0.0 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 VAL A:668 A:649 41.0 NA E -129.2 163.9 41.0 NA NA
VAL E:668 E:649 42.0 NA E -129.2 163.9 NA NA NA
VAL I:668 I:649 41.0 NA E -129.2 163.9 NA NA NA
VAL M:668 M:649 41.0 NA E -129.2 163.9 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 VAL A:667 A:649 0.0 0.0 E -122.6 125.2 0.0 0.0 0.0 HOH
7.149
CG2
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 VAL A:667 A:649 0.0 0.0 E -127.6 122.4 0.0 0.0 0.0 HOH
4.810
CG2
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 VAL A:667 A:649 0.0 0.0 E -123.4 124.0 0.0 0.0 0.0 HOH
6.617
CG2
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 VAL A:667 A:649 0.0 0.0 E -127.0 123.3 0.0 0.0 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 VAL A:667 A:649 0.0 0.0 E -123.5 121.8 0.0 0.0 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 VAL A:667 A:649 0.0 0.0 E -128.2 121.5 0.0 0.0 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 VAL A:667 A:649 1.0 0.006 E -115.6 117.7 1.0 0.006 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 VAL A:648 A:649 0.0 0.0 E -125.2 128.1 0.0 0.0 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 1.0 0.006 E -95.0 126.2 1.0 0.006 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 1.0 0.006 E -121.6 126.5 1.0 0.006 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 0.0 0.0 E -116.0 122.8 0.0 0.0 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 1.0 0.006 E -102.3 119.1 1.0 0.006 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 0.0 0.0 E -106.8 127.9 0.0 0.0 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 0.0 0.0 E -106.5 110.9 0.0 0.0 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 1.0 0.006 E -114.5 119.7 1.0 0.006 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 3.0 0.019 E -106.9 116.1 3.0 0.019 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:652 A:649 0.0 0.0 E -117.3 119.0 0.0 0.0 0.0
VAL B:652 B:649 1.0 0.006 E -114.7 129.7 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 VAL A:649 A:649 0.0 0.0 E -116.8 131.9 0.0 0.0 0.0
VAL B:649 B:649 0.0 0.0 E -115.7 129.1 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 VAL A:649 A:649 1.0 0.006 E -111.1 129.9 1.0 0.006 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 VAL A:649 A:649 0.0 0.0 -79.6 177.1 0.0 0.0 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:668 A:649 0.0 0.0 E -138.1 128.6 0.0 0.0 0.0
VAL C:668 C:649 0.0 0.0 E -137.6 128.2 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:668 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:668 A:649 0.0 0.0 E -126.1 128.2 0.0 0.0 0.0 HOH
9.236
N
O
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:668 A:649 0.0 0.0 E -116.4 144.0 0.0 0.0 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 VAL A:659 A:649 0.0 0.0 E -127.5 121.4 0.0 0.0 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 VAL A:659 A:649 8.0 0.052 -136.5 -38.0 8.0 0.052 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 VAL A:667 A:649 0.0 0.0 E -119.5 124.5 0.0 0.0 0.0
VAL C:667 C:649 0.0 0.0 E -121.0 126.5 NA NA NA
VAL E:667 E:649 0.0 0.0 E -120.5 125.7 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
2006-02-28 VAL A:263 A:649 0.0 0.0 E -136.0 127.3 0.0 0.0 0.0
VAL B:263 B:649 0.0 0.0 E -120.7 135.9 NA NA NA
VAL C:263 C:649 0.0 0.0 E -125.7 135.2 NA NA NA
VAL D:263 D:649 0.0 0.0 E -116.3 132.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 VAL A:649 A:649 0.0 0.0 E -115.4 128.0