Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61081095 | . | C | A | CCDS31576.1:NM_001923.4:c.1945Gtc>Ttc_NP_001914.3:p.649V>F | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -116.2 | 124.4 | 0.0 | 0.0 | 0.0 |
HOH |
6.573 |
CG1 |
O |
||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | VAL | B:649 | Y:649 | 0.0 | 0.0 | E | -125.2 | 130.5 | 0.0 | 0.0 | 0.0 | ||||||
VAL | D:649 | B:649 | 0.0 | 0.0 | E | -125.3 | 130.3 | NA | NA | NA | |||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -115.6 | 145.0 | 0.0 | 0.0 | 0.0 | ||||||
VAL | B:649 | B:649 | 0.0 | 0.0 | E | -115.5 | 145.0 | NA | NA | NA | |||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -123.1 | 137.9 | 0.0 | 0.0 | 0.0 | ||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -116.3 | 148.5 | 0.0 | 0.0 | 0.0 | ||||||
VAL | B:649 | B:649 | 0.0 | 0.0 | E | -120.0 | 141.9 | NA | NA | NA | |||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -111.9 | 130.7 | 0.0 | 0.0 | 0.0 | ||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | VAL | B:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -117.2 | 120.2 | 0.0 | 0.0 | 0.0 | ||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | VAL | B:649 | Y:649 | 0.0 | 0.0 | E | -138.8 | 118.6 | 0.0 | 0.0 | 0.0 | ||||||
VAL | E:649 | B:649 | 0.0 | 0.0 | E | -139.0 | 118.5 | NA | NA | NA | |||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | VAL | A:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
VAL | D:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
VAL | G:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
VAL | J:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | VAL | Z:649 | d:649 | 0.0 | 0.0 | E | -66.3 | 145.5 | 0.0 | 0.0 | 0.0 | ||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | VAL | A:651 | A:649 | 1.0 | 0.006 | E | -125.9 | 131.7 | 1.0 | 0.006 | 0.0 | ||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | VAL | A:651 | A:649 | 0.0 | 0.0 | E | -121.9 | 117.7 | 0.0 | 0.0 | 0.0 | ||||||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | VAL | T:652 | d:649 | 0.0 | 0.0 | E | -66.3 | 145.6 | 0.0 | 0.0 | 0.0 | ||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | VAL | N:652 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | VAL | Z:652 | d:649 | 35.0 | NA | E | -80.7 | 142.1 | 35.0 | NA | NA | ||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | VAL | Z:652 | d:649 | 35.0 | NA | E | -80.6 | 142.2 | 35.0 | NA | NA | ||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | VAL | A:653 | A:649 | 0.0 | 0.0 | -79.4 | 177.2 | 0.0 | 0.0 | 0.0 | |||||||
VAL | C:653 | C:649 | 0.0 | 0.0 | -79.5 | 177.0 | NA | NA | NA | ||||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:653 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:672 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:672 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:672 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | L:672 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | VAL | C:668 | C:649 | 0.0 | 0.0 | -79.2 | 177.1 | 0.0 | 0.0 | 0.0 | |||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | VAL | A:668 | A:649 | 0.0 | 0.0 | E | -103.4 | 121.4 | 0.0 | 0.0 | 0.0 | ||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | VAL | A:668 | A:649 | 41.0 | NA | E | -129.2 | 163.9 | 41.0 | NA | NA | ||||||
VAL | E:668 | E:649 | 42.0 | NA | E | -129.2 | 163.9 | NA | NA | NA | |||||||||||||
VAL | I:668 | I:649 | 41.0 | NA | E | -129.2 | 163.9 | NA | NA | NA | |||||||||||||
VAL | M:668 | M:649 | 41.0 | NA | E | -129.2 | 163.9 | NA | NA | NA | |||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:667 | A:649 | 0.0 | 0.0 | E | -122.6 | 125.2 | 0.0 | 0.0 | 0.0 |
HOH |
7.149 |
CG2 |
O |
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3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:667 | A:649 | 0.0 | 0.0 | E | -127.6 | 122.4 | 0.0 | 0.0 | 0.0 |
HOH |
4.810 |
CG2 |
O |
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3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:667 | A:649 | 0.0 | 0.0 | E | -123.4 | 124.0 | 0.0 | 0.0 | 0.0 |
HOH |
6.617 |
CG2 |
O |
||
4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | VAL | A:667 | A:649 | 0.0 | 0.0 | E | -127.0 | 123.3 | 0.0 | 0.0 | 0.0 | ||||||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | VAL | A:667 | A:649 | 0.0 | 0.0 | E | -123.5 | 121.8 | 0.0 | 0.0 | 0.0 | ||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | VAL | A:667 | A:649 | 0.0 | 0.0 | E | -128.2 | 121.5 | 0.0 | 0.0 | 0.0 | ||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | VAL | A:667 | A:649 | 1.0 | 0.006 | E | -115.6 | 117.7 | 1.0 | 0.006 | 0.0 | ||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | VAL | A:648 | A:649 | 0.0 | 0.0 | E | -125.2 | 128.1 | 0.0 | 0.0 | 0.0 | ||||||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 1.0 | 0.006 | E | -95.0 | 126.2 | 1.0 | 0.006 | 0.0 | ||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 1.0 | 0.006 | E | -121.6 | 126.5 | 1.0 | 0.006 | 0.0 | ||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 0.0 | 0.0 | E | -116.0 | 122.8 | 0.0 | 0.0 | 0.0 | ||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 1.0 | 0.006 | E | -102.3 | 119.1 | 1.0 | 0.006 | 0.0 | ||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 0.0 | 0.0 | E | -106.8 | 127.9 | 0.0 | 0.0 | 0.0 | ||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 0.0 | 0.0 | E | -106.5 | 110.9 | 0.0 | 0.0 | 0.0 | ||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 1.0 | 0.006 | E | -114.5 | 119.7 | 1.0 | 0.006 | 0.0 | ||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 3.0 | 0.019 | E | -106.9 | 116.1 | 3.0 | 0.019 | 0.0 | ||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:652 | A:649 | 0.0 | 0.0 | E | -117.3 | 119.0 | 0.0 | 0.0 | 0.0 | ||||||
VAL | B:652 | B:649 | 1.0 | 0.006 | E | -114.7 | 129.7 | NA | NA | NA | |||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -116.8 | 131.9 | 0.0 | 0.0 | 0.0 | ||||||
VAL | B:649 | B:649 | 0.0 | 0.0 | E | -115.7 | 129.1 | NA | NA | NA | |||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | VAL | A:649 | A:649 | 1.0 | 0.006 | E | -111.1 | 129.9 | 1.0 | 0.006 | 0.0 | ||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | VAL | A:649 | A:649 | 0.0 | 0.0 | -79.6 | 177.1 | 0.0 | 0.0 | 0.0 | |||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:668 | A:649 | 0.0 | 0.0 | E | -138.1 | 128.6 | 0.0 | 0.0 | 0.0 | ||||||
VAL | C:668 | C:649 | 0.0 | 0.0 | E | -137.6 | 128.2 | NA | NA | NA | |||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:668 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:668 | A:649 | 0.0 | 0.0 | E | -126.1 | 128.2 | 0.0 | 0.0 | 0.0 |
HOH |
9.236 |
N |
O |
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4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:668 | A:649 | 0.0 | 0.0 | E | -116.4 | 144.0 | 0.0 | 0.0 | 0.0 | ||||||
4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | VAL | A:659 | A:649 | 0.0 | 0.0 | E | -127.5 | 121.4 | 0.0 | 0.0 | 0.0 | ||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | VAL | A:659 | A:649 | 8.0 | 0.052 | -136.5 | -38.0 | 8.0 | 0.052 | 0.0 | |||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:667 | A:649 | 0.0 | 0.0 | E | -119.5 | 124.5 | 0.0 | 0.0 | 0.0 | ||||||
VAL | C:667 | C:649 | 0.0 | 0.0 | E | -121.0 | 126.5 | NA | NA | NA | |||||||||||||
VAL | E:667 | E:649 | 0.0 | 0.0 | E | -120.5 | 125.7 | NA | NA | NA | |||||||||||||
2b5n | 1 | 13435359 | 99.38 | 0.0 |
X-RAY |
2006-02-28 | VAL | A:263 | A:649 | 0.0 | 0.0 | E | -136.0 | 127.3 | 0.0 | 0.0 | 0.0 | ||||||
VAL | B:263 | B:649 | 0.0 | 0.0 | E | -120.7 | 135.9 | NA | NA | NA | |||||||||||||
VAL | C:263 | C:649 | 0.0 | 0.0 | E | -125.7 | 135.2 | NA | NA | NA | |||||||||||||
VAL | D:263 | D:649 | 0.0 | 0.0 | E | -116.3 | 132.4 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | VAL | A:649 | A:649 | 0.0 | 0.0 | E | -115.4 | 128.0 |