Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61081115 | . | C | A | CCDS31576.1:NM_001923.4:c.1925cGt>cTt_NP_001914.3:p.642R>L | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ARG | A:642 | A:642 | 158.0 | 0.702 | E | -110.8 | 139.0 | 158.0 | 0.702 | 0.0 |
HOH |
4.257 |
NH2 |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ARG | B:642 | Y:642 | 156.0 | 0.693 | E | -98.1 | 129.7 | 156.0 | 0.693 | 0.0 | ||||||
| ARG | D:642 | B:642 | 156.0 | 0.693 | E | -97.3 | 129.3 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ARG | A:642 | A:642 | 142.0 | 0.631 | E | -99.2 | 123.1 | 142.0 | 0.631 | 0.0 | ||||||
| ARG | B:642 | B:642 | 142.0 | 0.631 | E | -98.7 | 122.9 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ARG | A:642 | A:642 | 182.0 | 0.809 | E | -95.6 | 131.1 | 182.0 | 0.809 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ARG | A:642 | A:642 | 126.0 | 0.56 | -137.2 | 97.7 | 126.0 | 0.56 | 0.0 | |||||||
| ARG | B:642 | B:642 | 145.0 | 0.644 | -150.6 | 109.9 | NA | NA | NA | ||||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ARG | A:642 | A:642 | 126.0 | 0.56 | E | -110.4 | 134.5 | 126.0 | 0.56 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ARG | B:642 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ARG | A:642 | A:642 | 71.0 | NA | E | -103.0 | 124.7 | 71.0 | NA | NA | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ARG | B:642 | Y:642 | 155.0 | 0.689 | E | -114.0 | 136.0 | 155.0 | 0.689 | 0.0 | ||||||
| ARG | E:642 | B:642 | 154.0 | 0.684 | E | -113.7 | 136.5 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ARG | A:642 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ARG | D:642 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ARG | G:642 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ARG | J:642 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:642 | d:642 | 80.0 | NA | E | -87.4 | 107.2 | 80.0 | NA | NA | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ARG | A:644 | A:642 | 157.0 | 0.698 | E | -116.9 | 139.3 | 157.0 | 0.698 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ARG | A:644 | A:642 | 158.0 | 0.702 | E | -105.8 | 157.6 | 158.0 | 0.702 | 0.0 | ||||||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | T:645 | d:642 | 82.0 | NA | E | -86.8 | 106.8 | 82.0 | NA | NA | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | N:645 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | Z:645 | d:642 | 69.0 | NA | E | -89.0 | 120.8 | 69.0 | NA | NA | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:645 | d:642 | 70.0 | NA | E | -89.0 | 120.8 | 70.0 | NA | NA | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | A:646 | A:642 | 171.0 | 0.76 | E | -92.4 | 144.0 | 171.0 | 0.76 | 0.0 | ||||||
| ARG | C:646 | C:642 | 171.0 | 0.76 | E | -92.6 | 144.2 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:646 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:665 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:665 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:665 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | L:665 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | C:661 | C:642 | 172.0 | 0.764 | E | -92.4 | 144.2 | 172.0 | 0.764 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ARG | A:661 | A:642 | 76.0 | NA | E | -83.0 | 122.9 | 76.0 | NA | NA | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | A:661 | A:642 | 79.0 | NA | E | -98.7 | 139.8 | 79.0 | NA | NA | ||||||
| ARG | E:661 | E:642 | 79.0 | NA | E | -98.7 | 139.8 | NA | NA | NA | |||||||||||||
| ARG | I:661 | I:642 | 79.0 | NA | E | -98.7 | 139.9 | NA | NA | NA | |||||||||||||
| ARG | M:661 | M:642 | 79.0 | NA | E | -98.7 | 139.8 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:660 | A:642 | 150.0 | 0.667 | E | -108.0 | 142.0 | 150.0 | 0.667 | 0.0 |
HOH |
4.181 |
CB |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:660 | A:642 | 154.0 | 0.684 | E | -106.6 | 137.9 | 154.0 | 0.684 | 0.0 |
HOH |
8.480 |
NH1 |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:660 | A:642 | 151.0 | 0.671 | E | -98.2 | 136.4 | 151.0 | 0.671 | 0.0 |
HOH |
3.376 |
O |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:660 | A:642 | 147.0 | 0.653 | E | -103.7 | 133.7 | 147.0 | 0.653 | 0.0 | ||||||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:660 | A:642 | 155.0 | 0.689 | E | -98.1 | 119.0 | 155.0 | 0.689 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:660 | A:642 | 152.0 | 0.676 | E | -103.5 | 135.5 | 152.0 | 0.676 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ARG | A:660 | A:642 | 186.0 | 0.827 | E | -77.4 | 93.2 | 186.0 | 0.827 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ARG | A:641 | A:642 | 188.0 | 0.836 | E | -97.5 | 129.4 | 188.0 | 0.836 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 108.0 | 0.48 | -117.7 | 141.8 | 108.0 | 0.48 | 0.0 | |||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 104.0 | 0.462 | -85.2 | 134.2 | 104.0 | 0.462 | 0.0 | |||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 173.0 | 0.769 | E | -112.3 | 120.0 | 173.0 | 0.769 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 89.0 | 0.396 | -83.0 | 130.1 | 89.0 | 0.396 | 0.0 | |||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 94.0 | 0.418 | -87.4 | 129.4 | 94.0 | 0.418 | 0.0 | |||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 90.0 | 0.4 | -90.4 | 120.6 | 90.0 | 0.4 | 0.0 | |||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 78.0 | 0.347 | -89.5 | 126.0 | 78.0 | 0.347 | 0.0 | |||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 96.0 | 0.427 | -71.8 | 113.1 | 96.0 | 0.427 | 0.0 | |||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:645 | A:642 | 85.0 | 0.378 | -95.9 | 126.8 | 85.0 | 0.378 | 0.0 | |||||||
| ARG | B:645 | B:642 | 105.0 | 0.467 | -106.9 | 127.0 | NA | NA | NA | ||||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:642 | A:642 | 178.0 | 0.791 | -121.2 | 116.3 | 178.0 | 0.791 | 0.0 | |||||||
| ARG | B:642 | B:642 | 179.0 | 0.796 | -141.4 | 126.4 | NA | NA | NA | ||||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:642 | A:642 | 91.0 | 0.404 | -88.7 | 110.1 | 91.0 | 0.404 | 0.0 | |||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ARG | A:642 | A:642 | 172.0 | 0.764 | E | -92.5 | 144.2 | 172.0 | 0.764 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:661 | A:642 | 173.0 | 0.769 | E | -139.7 | 118.0 | 173.0 | 0.769 | 0.0 | ||||||
| ARG | C:661 | C:642 | 173.0 | 0.769 | E | -139.0 | 118.6 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:661 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:661 | A:642 | 59.0 | 0.262 | E | -108.8 | 131.6 | 59.0 | 0.262 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:661 | A:642 | 115.0 | 0.511 | E | -84.3 | 136.7 | 115.0 | 0.511 | 0.0 | ||||||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ARG | A:652 | A:642 | 161.0 | 0.716 | E | -106.3 | 137.5 | 161.0 | 0.716 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ARG | A:652 | A:642 | 105.0 | 0.467 | -105.2 | -108.3 | 105.0 | 0.467 | 0.0 | |||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:660 | A:642 | 166.0 | 0.738 | E | -126.7 | 120.4 | 166.0 | 0.738 | 0.0 | ||||||
| ARG | C:660 | C:642 | 167.0 | 0.742 | -120.8 | 122.0 | NA | NA | NA | ||||||||||||||
| ARG | E:660 | E:642 | 167.0 | 0.742 | -121.1 | 121.3 | NA | NA | NA | ||||||||||||||
| 2b5n | 1 | 13435359 | 99.38 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:256 | A:642 | 193.0 | 0.858 | -106.6 | 135.5 | 193.0 | 0.858 | 0.0 | |||||||
| ARG | B:256 | B:642 | 162.0 | 0.72 | E | -98.1 | 128.3 | NA | NA | NA | |||||||||||||
| ARG | C:256 | C:642 | 159.0 | 0.707 | -106.8 | 153.0 | NA | NA | NA | ||||||||||||||
| ARG | D:256 | D:642 | 133.0 | 0.591 | E | -130.1 | 126.2 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ARG | A:642 | A:642 | 192.0 | 0.853 | E | -113.3 | 140.5 | |