Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61081163 | . | C | A | CCDS31576.1:NM_001923.4:c.1877cGt>cTt_NP_001914.3:p.626R>L | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ARG | A:626 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ARG | B:626 | Y:626 | 132.0 | 0.587 | E | -63.5 | 136.9 | 132.0 | 0.587 | 0.0 | ||||||
ARG | D:626 | B:626 | 81.0 | NA | -157.0 | 147.5 | NA | NA | NA | ||||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ARG | A:626 | A:626 | 60.0 | 0.267 | E | -69.2 | 110.3 | 60.0 | 0.267 | 0.0 | ||||||
ARG | B:626 | B:626 | 59.0 | 0.262 | E | -69.2 | 110.1 | NA | NA | NA | |||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ARG | A:626 | A:626 | 107.0 | 0.476 | E | -74.1 | 128.5 | 107.0 | 0.476 | 0.0 | ||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ARG | A:626 | A:626 | 105.0 | 0.467 | -57.1 | 129.9 | 105.0 | 0.467 | 0.0 | |||||||
ARG | B:626 | B:626 | 107.0 | 0.476 | -61.2 | 133.1 | NA | NA | NA | ||||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ARG | A:626 | A:626 | 123.0 | 0.547 | E | -41.9 | 109.5 | 123.0 | 0.547 | 0.0 | ||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ARG | B:626 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ARG | A:626 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ARG | B:626 | Y:626 | 110.0 | 0.489 | E | -66.6 | 146.2 | 110.0 | 0.489 | 0.0 | ||||||
ARG | E:626 | B:626 | 111.0 | 0.493 | E | -65.5 | 141.7 | NA | NA | NA | |||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ARG | A:626 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
ARG | D:626 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
ARG | G:626 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
ARG | J:626 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:626 | d:626 | 86.0 | 0.382 | E | -62.1 | 132.6 | 86.0 | 0.382 | 0.0 | ||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ARG | A:628 | A:626 | 113.0 | 0.502 | E | -55.8 | 128.8 | 113.0 | 0.502 | 0.0 | ||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ARG | A:628 | A:626 | 105.0 | 0.467 | E | -55.0 | 126.1 | 105.0 | 0.467 | 0.0 |
HOH |
5.097 |
N |
O |
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7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | T:629 | d:626 | 45.0 | 0.2 | E | -61.3 | 133.3 | 45.0 | 0.2 | 0.0 | ||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | N:629 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | Z:629 | d:626 | 81.0 | NA | -64.9 | 121.0 | 81.0 | NA | NA | |||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:629 | d:626 | 81.0 | NA | -64.7 | 121.0 | 81.0 | NA | NA | |||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | A:630 | A:626 | 111.0 | 0.493 | -58.9 | 108.4 | 111.0 | 0.493 | 0.0 | |||||||
ARG | C:630 | C:626 | 110.0 | 0.489 | -59.5 | 108.8 | NA | NA | NA | ||||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:630 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | L:649 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | C:645 | C:626 | 111.0 | 0.493 | -59.3 | 108.4 | 111.0 | 0.493 | 0.0 | |||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ARG | A:645 | A:626 | 101.0 | 0.449 | E | -65.5 | 140.6 | 101.0 | 0.449 | 0.0 | ||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | A:645 | A:626 | 83.0 | NA | E | -71.6 | 152.2 | 83.0 | NA | NA | ||||||
ARG | E:645 | E:626 | 84.0 | NA | E | -71.6 | 152.3 | NA | NA | NA | |||||||||||||
ARG | I:645 | I:626 | 84.0 | NA | E | -71.7 | 152.3 | NA | NA | NA | |||||||||||||
ARG | M:645 | M:626 | 83.0 | NA | E | -71.6 | 152.3 | NA | NA | NA | |||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:644 | A:626 | 64.0 | 0.284 | E | -57.7 | 123.7 | 64.0 | 0.284 | 0.0 |
HOH |
4.812 |
N |
O |
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3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:644 | A:626 | 71.0 | 0.316 | E | -54.2 | 131.1 | 71.0 | 0.316 | 0.0 |
HOH |
2.935 |
NE |
O |
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3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:644 | A:626 | 107.0 | 0.476 | E | -60.0 | 119.8 | 107.0 | 0.476 | 0.0 |
HOH |
3.602 |
NE |
O |
||
4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:644 | A:626 | 93.0 | 0.413 | E | -58.0 | 122.7 | 93.0 | 0.413 | 0.0 | ||||||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:644 | A:626 | 96.0 | 0.427 | E | -59.0 | 123.0 | 96.0 | 0.427 | 0.0 | ||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:644 | A:626 | 98.0 | 0.436 | E | -56.5 | 121.7 | 98.0 | 0.436 | 0.0 | ||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ARG | A:644 | A:626 | 95.0 | 0.422 | -127.6 | 143.8 | 95.0 | 0.422 | 0.0 | |||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ARG | A:625 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 97.0 | 0.431 | -119.3 | 106.4 | 97.0 | 0.431 | 0.0 | |||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 98.0 | 0.436 | -153.5 | 98.4 | 98.0 | 0.436 | 0.0 | |||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 82.0 | 0.364 | E | -128.4 | 141.3 | 82.0 | 0.364 | 0.0 | ||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 156.0 | 0.693 | -130.8 | 96.7 | 156.0 | 0.693 | 0.0 | |||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 121.0 | 0.538 | -82.3 | 119.0 | 121.0 | 0.538 | 0.0 | |||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 100.0 | 0.444 | 165.8 | 119.8 | 100.0 | 0.444 | 0.0 | |||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 99.0 | 0.44 | -96.9 | 107.2 | 99.0 | 0.44 | 0.0 | |||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 109.0 | 0.484 | -77.5 | 112.3 | 109.0 | 0.484 | 0.0 | |||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:629 | A:626 | 104.0 | 0.462 | -119.8 | 136.6 | 104.0 | 0.462 | 0.0 | |||||||
ARG | B:629 | B:626 | 102.0 | 0.453 | -124.5 | 108.3 | NA | NA | NA | ||||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:626 | A:626 | 109.0 | 0.484 | E | -56.0 | 117.3 | 109.0 | 0.484 | 0.0 | ||||||
ARG | B:626 | B:626 | 110.0 | 0.489 | E | -61.1 | 83.7 | NA | NA | NA | |||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:626 | A:626 | 105.0 | 0.467 | -139.8 | 136.5 | 105.0 | 0.467 | 0.0 | |||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ARG | A:626 | A:626 | 111.0 | 0.493 | -58.9 | 108.4 | 111.0 | 0.493 | 0.0 | |||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:645 | A:626 | 34.0 | 0.151 | -91.6 | 129.2 | 34.0 | 0.151 | 0.0 | |||||||
ARG | C:645 | C:626 | 49.0 | 0.218 | -91.7 | 130.1 | NA | NA | NA | ||||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:645 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:645 | A:626 | 126.0 | 0.56 | -78.1 | 126.0 | 126.0 | 0.56 | 0.0 | |||||||
4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:645 | A:626 | 83.0 | 0.369 | E | -74.8 | 134.8 | 83.0 | 0.369 | 0.0 | ||||||
4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ARG | A:636 | A:626 | 124.0 | 0.551 | E | -53.6 | 131.2 | 124.0 | 0.551 | 0.0 | ||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ARG | A:636 | A:626 | 149.0 | 0.662 | E | -69.4 | 120.8 | 149.0 | 0.662 | 0.0 | ||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:644 | A:626 | 138.0 | 0.613 | E | -59.6 | 104.4 | 138.0 | 0.613 | 0.0 | ||||||
ARG | C:644 | C:626 | 141.0 | 0.627 | E | -59.6 | 104.2 | NA | NA | NA | |||||||||||||
ARG | E:644 | E:626 | 139.0 | 0.618 | E | -59.4 | 104.1 | NA | NA | NA | |||||||||||||
2b5n | 1 | 13435359 | 99.38 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:240 | A:626 | 107.0 | 0.476 | E | -61.7 | 118.1 | 107.0 | 0.476 | 0.0 |
HOH |
8.738 |
N |
O |
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ARG | B:240 | B:626 | 116.0 | 0.516 | E | -46.9 | 122.4 | NA | NA | NA | |||||||||||||
ARG | C:240 | C:626 | 110.0 | 0.489 | E | -63.9 | 118.6 | NA | NA | NA | |||||||||||||
ARG | D:240 | D:626 | 141.0 | 0.627 | E | -48.3 | 127.6 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ARG | A:626 | A:626 | 115.0 | 0.511 | E | -52.6 | 121.6 |