Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61081163 . C A CCDS31576.1:NM_001923.4:c.1877cGt>cTt_NP_001914.3:p.626R>L Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 ARG A:626 NA:NA DO NA DO DO DO NA NA NA
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 ARG B:626 Y:626 132.0 0.587 E -63.5 136.9 132.0 0.587 0.0
ARG D:626 B:626 81.0 NA -157.0 147.5 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 ARG A:626 A:626 60.0 0.267 E -69.2 110.3 60.0 0.267 0.0
ARG B:626 B:626 59.0 0.262 E -69.2 110.1 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 ARG A:626 A:626 107.0 0.476 E -74.1 128.5 107.0 0.476 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 ARG A:626 A:626 105.0 0.467 -57.1 129.9 105.0 0.467 0.0
ARG B:626 B:626 107.0 0.476 -61.2 133.1 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 ARG A:626 A:626 123.0 0.547 E -41.9 109.5 123.0 0.547 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 ARG B:626 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 ARG A:626 NA:NA DO NA DO DO DO NA NA NA
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 ARG B:626 Y:626 110.0 0.489 E -66.6 146.2 110.0 0.489 0.0
ARG E:626 B:626 111.0 0.493 E -65.5 141.7 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 ARG A:626 NA:NA DO NA DO DO DO NA NA NA
ARG D:626 NA:NA DO NA DO DO DO NA NA NA
ARG G:626 NA:NA DO NA DO DO DO NA NA NA
ARG J:626 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 ARG Z:626 d:626 86.0 0.382 E -62.1 132.6 86.0 0.382 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 ARG A:628 A:626 113.0 0.502 E -55.8 128.8 113.0 0.502 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 ARG A:628 A:626 105.0 0.467 E -55.0 126.1 105.0 0.467 0.0 HOH
5.097
N
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 ARG T:629 d:626 45.0 0.2 E -61.3 133.3 45.0 0.2 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 ARG N:629 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 ARG Z:629 d:626 81.0 NA -64.9 121.0 81.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 ARG Z:629 d:626 81.0 NA -64.7 121.0 81.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 ARG A:630 A:626 111.0 0.493 -58.9 108.4 111.0 0.493 0.0
ARG C:630 C:626 110.0 0.489 -59.5 108.8 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 ARG K:630 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 ARG K:649 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 ARG K:649 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 ARG K:649 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 ARG L:649 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 ARG C:645 C:626 111.0 0.493 -59.3 108.4 111.0 0.493 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 ARG A:645 A:626 101.0 0.449 E -65.5 140.6 101.0 0.449 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 ARG A:645 A:626 83.0 NA E -71.6 152.2 83.0 NA NA
ARG E:645 E:626 84.0 NA E -71.6 152.3 NA NA NA
ARG I:645 I:626 84.0 NA E -71.7 152.3 NA NA NA
ARG M:645 M:626 83.0 NA E -71.6 152.3 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ARG A:644 A:626 64.0 0.284 E -57.7 123.7 64.0 0.284 0.0 HOH
4.812
N
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ARG A:644 A:626 71.0 0.316 E -54.2 131.1 71.0 0.316 0.0 HOH
2.935
NE
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ARG A:644 A:626 107.0 0.476 E -60.0 119.8 107.0 0.476 0.0 HOH
3.602
NE
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ARG A:644 A:626 93.0 0.413 E -58.0 122.7 93.0 0.413 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ARG A:644 A:626 96.0 0.427 E -59.0 123.0 96.0 0.427 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ARG A:644 A:626 98.0 0.436 E -56.5 121.7 98.0 0.436 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 ARG A:644 A:626 95.0 0.422 -127.6 143.8 95.0 0.422 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 ARG A:625 NA:NA DO NA DO DO DO NA NA NA
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 97.0 0.431 -119.3 106.4 97.0 0.431 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 98.0 0.436 -153.5 98.4 98.0 0.436 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 82.0 0.364 E -128.4 141.3 82.0 0.364 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 156.0 0.693 -130.8 96.7 156.0 0.693 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 121.0 0.538 -82.3 119.0 121.0 0.538 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 100.0 0.444 165.8 119.8 100.0 0.444 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 99.0 0.44 -96.9 107.2 99.0 0.44 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 109.0 0.484 -77.5 112.3 109.0 0.484 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ARG A:629 A:626 104.0 0.462 -119.8 136.6 104.0 0.462 0.0
ARG B:629 B:626 102.0 0.453 -124.5 108.3 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 ARG A:626 A:626 109.0 0.484 E -56.0 117.3 109.0 0.484 0.0
ARG B:626 B:626 110.0 0.489 E -61.1 83.7 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 ARG A:626 A:626 105.0 0.467 -139.8 136.5 105.0 0.467 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 ARG A:626 A:626 111.0 0.493 -58.9 108.4 111.0 0.493 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ARG A:645 A:626 34.0 0.151 -91.6 129.2 34.0 0.151 0.0
ARG C:645 C:626 49.0 0.218 -91.7 130.1 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ARG A:645 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ARG A:645 A:626 126.0 0.56 -78.1 126.0 126.0 0.56 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ARG A:645 A:626 83.0 0.369 E -74.8 134.8 83.0 0.369 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 ARG A:636 A:626 124.0 0.551 E -53.6 131.2 124.0 0.551 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 ARG A:636 A:626 149.0 0.662 E -69.4 120.8 149.0 0.662 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 ARG A:644 A:626 138.0 0.613 E -59.6 104.4 138.0 0.613 0.0
ARG C:644 C:626 141.0 0.627 E -59.6 104.2 NA NA NA
ARG E:644 E:626 139.0 0.618 E -59.4 104.1 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
2006-02-28 ARG A:240 A:626 107.0 0.476 E -61.7 118.1 107.0 0.476 0.0 HOH
8.738
N
O
ARG B:240 B:626 116.0 0.516 E -46.9 122.4 NA NA NA
ARG C:240 C:626 110.0 0.489 E -63.9 118.6 NA NA NA
ARG D:240 D:626 141.0 0.627 E -48.3 127.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ARG A:626 A:626 115.0 0.511 E -52.6 121.6