Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61081629 | . | T | A | CCDS31576.1:NM_001923.4:c.1643gAc>gTc_NP_001914.3:p.548D>V | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ASP | A:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ASP | B:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ASP | D:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ASP | A:548 | A:548 | 168.0 | 1.0 | S | -113.5 | -38.6 | 168.0 | 1.0 | 0.0 | ||||||
| ASP | B:548 | B:548 | 167.0 | 1.0 | S | -115.1 | -39.8 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ASP | A:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ASP | A:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ASP | B:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ASP | A:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ASP | B:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ASP | A:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ASP | B:548 | Y:548 | 118.0 | NA | S | 66.1 | -46.9 | 118.0 | NA | NA | ||||||
| ASP | E:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ASP | A:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ASP | D:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ASP | G:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ASP | J:548 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASP | Z:548 | d:548 | 55.0 | 0.367 | -59.4 | -66.9 | 55.0 | 0.367 | 0.0 | |||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ASP | A:550 | A:548 | 153.0 | 1.0 | -94.6 | 360.0 | 153.0 | 1.0 | 0.0 | |||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ASP | A:550 | A:548 | 126.0 | 0.84 | S | -46.2 | 114.5 | 126.0 | 0.84 | 0.0 |
HOH |
7.808 |
O |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASP | T:551 | d:548 | 50.0 | 0.333 | -59.4 | -66.8 | 50.0 | 0.333 | 0.0 | |||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASP | N:551 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASP | Z:551 | d:548 | 45.0 | NA | -62.4 | -64.5 | 45.0 | NA | NA | |||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASP | Z:551 | d:548 | 47.0 | NA | -62.4 | -64.5 | 47.0 | NA | NA | |||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASP | A:552 | A:548 | 169.0 | 1.0 | T | -67.5 | -7.2 | 169.0 | 1.0 | 0.0 | ||||||
| ASP | C:552 | C:548 | 170.0 | 1.0 | T | -67.5 | -7.1 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASP | K:552 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASP | K:571 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASP | K:571 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASP | K:571 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASP | L:571 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASP | C:567 | C:548 | 171.0 | 1.0 | T | -67.7 | -7.1 | 171.0 | 1.0 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ASP | A:567 | A:548 | 98.0 | 0.653 | 51.4 | -116.9 | 98.0 | 0.653 | 0.0 | |||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASP | A:567 | A:548 | 110.0 | NA | T | -112.2 | 22.9 | 110.0 | NA | NA | ||||||
| ASP | E:567 | E:548 | 108.0 | NA | T | -112.2 | 22.8 | NA | NA | NA | |||||||||||||
| ASP | I:567 | I:548 | 108.0 | NA | T | -112.2 | 22.8 | NA | NA | NA | |||||||||||||
| ASP | M:567 | M:548 | 110.0 | NA | T | -112.2 | 22.8 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASP | A:566 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASP | A:566 | A:548 | 184.0 | 1.0 | -86.1 | 360.0 | 184.0 | 1.0 | 0.0 |
HOH |
3.505 |
C |
O |
|||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASP | A:566 | A:548 | 158.0 | 1.0 | S | -93.8 | 81.4 | 158.0 | 1.0 | 0.0 |
HOH |
2.695 |
OD2 |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASP | A:566 | A:548 | 168.0 | 1.0 | S | -81.4 | 62.6 | 168.0 | 1.0 | 0.0 |
HOH |
8.950 |
N |
O |
||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASP | A:566 | A:548 | 163.0 | 1.0 | S | -81.7 | 49.5 | 163.0 | 1.0 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASP | A:566 | A:548 | 164.0 | 1.0 | S | -82.2 | 60.0 | 164.0 | 1.0 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ASP | A:566 | A:548 | 78.0 | 0.52 | 52.0 | -82.5 | 78.0 | 0.52 | 0.0 | |||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ASP | A:547 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 136.0 | 0.907 | S | -62.7 | 3.6 | 136.0 | 0.907 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 144.0 | 0.96 | S | -56.9 | -4.3 | 144.0 | 0.96 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 154.0 | 1.0 | S | -151.3 | 30.2 | 154.0 | 1.0 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 107.0 | 0.713 | S | -87.3 | 38.3 | 107.0 | 0.713 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 109.0 | 0.727 | S | -77.9 | 57.7 | 109.0 | 0.727 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 112.0 | 0.747 | S | -86.7 | 39.8 | 112.0 | 0.747 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 121.0 | 0.807 | S | -90.3 | 50.5 | 121.0 | 0.807 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 99.0 | 0.66 | S | -97.0 | 14.3 | 99.0 | 0.66 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASP | A:551 | A:548 | 67.0 | 0.447 | T | -119.3 | -2.8 | 67.0 | 0.447 | 0.0 | ||||||
| ASP | B:551 | B:548 | 70.0 | 0.467 | S | -123.2 | -8.2 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASP | A:548 | A:548 | 165.0 | 1.0 | T | -75.0 | 10.0 | 165.0 | 1.0 | 0.0 | ||||||
| ASP | B:548 | B:548 | 159.0 | 1.0 | S | -89.9 | -35.9 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASP | A:548 | A:548 | 115.0 | 0.767 | S | -79.4 | 47.2 | 115.0 | 0.767 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ASP | A:548 | A:548 | 169.0 | 1.0 | T | -67.6 | -7.0 | 169.0 | 1.0 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASP | A:567 | A:548 | 178.0 | 1.0 | S | -101.3 | 14.3 | 178.0 | 1.0 | 0.0 | ||||||
| ASP | C:567 | C:548 | 175.0 | 1.0 | S | -101.5 | 13.5 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASP | A:567 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASP | A:567 | A:548 | 179.0 | 1.0 | S | -91.5 | 15.3 | 179.0 | 1.0 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASP | A:567 | A:548 | 131.0 | 0.873 | S | -41.0 | -38.6 | 131.0 | 0.873 | 0.0 | ||||||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ASP | A:558 | A:548 | 112.0 | 0.747 | S | -85.5 | -166.8 | 112.0 | 0.747 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ASP | A:558 | A:548 | 150.0 | 1.0 | S | -63.5 | -60.6 | 150.0 | 1.0 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ASP | A:566 | A:548 | 166.0 | 1.0 | T | -71.4 | 14.6 | 166.0 | 1.0 | 0.0 | ||||||
| ASP | C:566 | C:548 | 166.0 | 1.0 | T | -70.9 | 14.0 | NA | NA | NA | |||||||||||||
| ASP | E:566 | E:548 | 167.0 | 1.0 | T | -70.4 | 14.0 | NA | NA | NA | |||||||||||||
| 2b5n | 1 | 13435359 | 99.38 | 0.0 |
X-RAY |
2006-02-28 | ASP | A:162 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ASP | B:162 | B:548 | 167.0 | 1.0 | S | -54.0 | 38.3 | NA | NA | NA | |||||||||||||
| ASP | C:162 | C:548 | 182.0 | 1.0 | S | -87.0 | 78.6 | NA | NA | NA | |||||||||||||
| ASP | D:162 | D:548 | 163.0 | 1.0 | T | -104.1 | 31.6 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ASP | A:548 | A:548 | 169.0 | 1.0 | T | -77.1 | 26.0 | |